Strain Fitness in Methylophilus sp. DMC18 around GFF214

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF213 and GFF214 are separated by 348 nucleotidesGFF214 and GFF215 are separated by 62 nucleotidesGFF215 and GFF216 overlap by 26 nucleotides GFF213 - putative formate transporter 1, at 218,747 to 219,556 GFF213 GFF214 - Nitrate regulatory protein, at 219,905 to 221,182 GFF214 GFF215 - Aliphatic amidase regulator, at 221,245 to 221,934 GFF215 GFF216 - Aliphatic amidase expression-regulating protein, at 221,909 to 223,075 GFF216 Position (kb) 219 220 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 218.917 kb on + strand, within GFF213at 218.918 kb on - strand, within GFF213at 218.918 kb on - strand, within GFF213at 218.918 kb on - strand, within GFF213at 219.062 kb on - strand, within GFF213at 219.122 kb on + strand, within GFF213at 219.163 kb on + strand, within GFF213at 219.164 kb on - strand, within GFF213at 219.164 kb on - strand, within GFF213at 219.172 kb on - strand, within GFF213at 219.182 kb on - strand, within GFF213at 219.229 kb on + strand, within GFF213at 219.233 kb on + strand, within GFF213at 219.234 kb on - strand, within GFF213at 219.247 kb on + strand, within GFF213at 219.412 kb on + strand, within GFF213at 219.412 kb on + strand, within GFF213at 219.413 kb on - strand, within GFF213at 219.413 kb on - strand, within GFF213at 219.457 kb on + strand, within GFF213at 219.458 kb on - strand, within GFF213at 219.459 kb on + strand, within GFF213at 219.459 kb on + strand, within GFF213at 219.460 kb on - strand, within GFF213at 219.490 kb on + strandat 219.515 kb on + strandat 219.523 kb on + strandat 219.524 kb on - strandat 219.545 kb on + strandat 219.546 kb on - strandat 219.549 kb on + strandat 219.549 kb on + strandat 219.550 kb on - strandat 219.550 kb on - strandat 219.550 kb on - strandat 219.561 kb on + strandat 219.561 kb on + strandat 219.561 kb on + strandat 219.561 kb on + strandat 219.568 kb on + strandat 219.568 kb on + strandat 219.627 kb on - strandat 219.676 kb on + strandat 219.677 kb on - strandat 219.718 kb on + strandat 219.718 kb on + strandat 219.718 kb on + strandat 219.718 kb on + strandat 219.718 kb on + strandat 219.719 kb on - strandat 219.719 kb on - strandat 219.719 kb on - strandat 219.719 kb on - strandat 219.719 kb on - strandat 219.719 kb on - strandat 219.719 kb on - strandat 219.719 kb on - strandat 219.719 kb on - strandat 219.723 kb on - strandat 219.764 kb on + strandat 219.764 kb on + strandat 219.765 kb on - strandat 219.775 kb on - strandat 219.783 kb on + strandat 219.830 kb on - strandat 219.843 kb on - strandat 219.844 kb on + strandat 219.850 kb on + strandat 219.850 kb on + strandat 219.850 kb on + strandat 219.850 kb on + strandat 219.851 kb on - strandat 219.851 kb on - strandat 219.851 kb on - strandat 219.851 kb on - strandat 219.854 kb on + strandat 219.856 kb on + strandat 219.857 kb on - strandat 219.857 kb on - strandat 219.857 kb on - strandat 219.865 kb on + strandat 219.865 kb on + strandat 219.865 kb on + strandat 219.866 kb on - strandat 219.866 kb on - strandat 219.866 kb on - strandat 219.867 kb on + strandat 219.867 kb on + strandat 220.018 kb on + strandat 220.035 kb on - strand, within GFF214at 220.085 kb on - strand, within GFF214at 220.150 kb on + strand, within GFF214at 220.150 kb on + strand, within GFF214at 220.150 kb on + strand, within GFF214at 220.150 kb on + strand, within GFF214at 220.150 kb on + strand, within GFF214at 220.151 kb on - strand, within GFF214at 220.151 kb on - strand, within GFF214at 220.151 kb on - strand, within GFF214at 220.151 kb on - strand, within GFF214at 220.151 kb on - strand, within GFF214at 220.169 kb on - strand, within GFF214at 220.174 kb on + strand, within GFF214at 220.174 kb on + strand, within GFF214at 220.175 kb on - strand, within GFF214at 220.175 kb on - strand, within GFF214at 220.175 kb on - strand, within GFF214at 220.234 kb on + strand, within GFF214at 220.235 kb on - strand, within GFF214at 220.235 kb on - strand, within GFF214at 220.235 kb on - strand, within GFF214at 220.235 kb on - strand, within GFF214at 220.235 kb on - strand, within GFF214at 220.237 kb on + strand, within GFF214at 220.238 kb on - strand, within GFF214at 220.238 kb on - strand, within GFF214at 220.284 kb on + strand, within GFF214at 220.418 kb on - strand, within GFF214at 220.432 kb on + strand, within GFF214at 220.496 kb on + strand, within GFF214at 220.497 kb on - strand, within GFF214at 220.533 kb on - strand, within GFF214at 220.640 kb on + strand, within GFF214at 220.641 kb on - strand, within GFF214at 220.641 kb on - strand, within GFF214at 220.699 kb on - strand, within GFF214at 220.699 kb on - strand, within GFF214at 220.778 kb on + strand, within GFF214at 220.778 kb on + strand, within GFF214at 220.778 kb on + strand, within GFF214at 220.779 kb on - strand, within GFF214at 220.791 kb on + strand, within GFF214at 220.792 kb on - strand, within GFF214at 220.792 kb on - strand, within GFF214at 220.792 kb on - strand, within GFF214at 220.792 kb on - strand, within GFF214at 220.792 kb on - strand, within GFF214at 220.799 kb on + strand, within GFF214at 220.799 kb on + strand, within GFF214at 220.800 kb on - strand, within GFF214at 220.831 kb on + strand, within GFF214at 220.831 kb on + strand, within GFF214at 220.832 kb on - strand, within GFF214at 220.844 kb on + strand, within GFF214at 220.845 kb on - strand, within GFF214at 220.845 kb on - strand, within GFF214at 220.845 kb on - strand, within GFF214at 220.845 kb on - strand, within GFF214at 220.853 kb on - strand, within GFF214at 220.929 kb on + strand, within GFF214at 221.025 kb on - strand, within GFF214at 221.029 kb on - strand, within GFF214at 221.096 kb on - strandat 221.149 kb on + strandat 221.272 kb on + strandat 221.273 kb on - strandat 221.273 kb on - strandat 221.273 kb on - strandat 221.273 kb on - strandat 221.355 kb on - strand, within GFF215at 221.451 kb on + strand, within GFF215at 221.470 kb on + strand, within GFF215at 221.471 kb on - strand, within GFF215at 221.471 kb on - strand, within GFF215at 221.471 kb on - strand, within GFF215at 221.595 kb on - strand, within GFF215at 221.674 kb on + strand, within GFF215at 221.674 kb on + strand, within GFF215at 221.675 kb on - strand, within GFF215at 221.976 kb on + strandat 222.062 kb on + strand, within GFF216at 222.097 kb on + strand, within GFF216at 222.098 kb on - strand, within GFF216at 222.153 kb on + strand, within GFF216at 222.153 kb on + strand, within GFF216

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
218,917 + GFF213 0.21 -1.2
218,918 - GFF213 0.21 -0.2
218,918 - GFF213 0.21 -0.4
218,918 - GFF213 0.21 +1.0
219,062 - GFF213 0.39 +0.2
219,122 + GFF213 0.46 +0.8
219,163 + GFF213 0.51 +0.0
219,164 - GFF213 0.51 +0.2
219,164 - GFF213 0.51 -1.3
219,172 - GFF213 0.52 +0.0
219,182 - GFF213 0.54 -0.1
219,229 + GFF213 0.60 -1.3
219,233 + GFF213 0.60 +0.0
219,234 - GFF213 0.60 +0.2
219,247 + GFF213 0.62 +0.3
219,412 + GFF213 0.82 -1.0
219,412 + GFF213 0.82 +0.3
219,413 - GFF213 0.82 -1.8
219,413 - GFF213 0.82 +0.0
219,457 + GFF213 0.88 -1.0
219,458 - GFF213 0.88 -1.0
219,459 + GFF213 0.88 +0.8
219,459 + GFF213 0.88 -0.7
219,460 - GFF213 0.88 -0.9
219,490 + -1.2
219,515 + -1.6
219,523 + +0.0
219,524 - -1.9
219,545 + +1.0
219,546 - -0.5
219,549 + +0.2
219,549 + -0.3
219,550 - +0.1
219,550 - -0.6
219,550 - -0.1
219,561 + -0.8
219,561 + +0.3
219,561 + -0.3
219,561 + -0.2
219,568 + -0.1
219,568 + -1.3
219,627 - +0.9
219,676 + -1.3
219,677 - -0.8
219,718 + +0.3
219,718 + +0.2
219,718 + -0.6
219,718 + -0.2
219,718 + -0.2
219,719 - +0.0
219,719 - -0.3
219,719 - +0.0
219,719 - -0.5
219,719 - +0.7
219,719 - -0.3
219,719 - +1.2
219,719 - -0.2
219,719 - +0.0
219,723 - +0.0
219,764 + -1.6
219,764 + -0.3
219,765 - +0.0
219,775 - -0.7
219,783 + +0.1
219,830 - -1.6
219,843 - -1.3
219,844 + +0.0
219,850 + -2.2
219,850 + +0.6
219,850 + -0.7
219,850 + -1.2
219,851 - +0.2
219,851 - -0.8
219,851 - -1.3
219,851 - -0.2
219,854 + -0.4
219,856 + -1.0
219,857 - -1.0
219,857 - -1.3
219,857 - +0.0
219,865 + -1.8
219,865 + -0.3
219,865 + -1.3
219,866 - -1.8
219,866 - -1.0
219,866 - -0.5
219,867 + -1.0
219,867 + -0.4
220,018 + -1.6
220,035 - GFF214 0.10 -0.7
220,085 - GFF214 0.14 -1.3
220,150 + GFF214 0.19 -0.3
220,150 + GFF214 0.19 -1.6
220,150 + GFF214 0.19 -2.2
220,150 + GFF214 0.19 -1.3
220,150 + GFF214 0.19 -1.3
220,151 - GFF214 0.19 -1.8
220,151 - GFF214 0.19 -1.0
220,151 - GFF214 0.19 -3.0
220,151 - GFF214 0.19 -0.3
220,151 - GFF214 0.19 -1.0
220,169 - GFF214 0.21 -1.0
220,174 + GFF214 0.21 -3.5
220,174 + GFF214 0.21 -1.6
220,175 - GFF214 0.21 -1.3
220,175 - GFF214 0.21 -1.0
220,175 - GFF214 0.21 -1.0
220,234 + GFF214 0.26 -1.5
220,235 - GFF214 0.26 +1.0
220,235 - GFF214 0.26 -3.6
220,235 - GFF214 0.26 -1.0
220,235 - GFF214 0.26 -1.5
220,235 - GFF214 0.26 -1.2
220,237 + GFF214 0.26 -1.0
220,238 - GFF214 0.26 -1.7
220,238 - GFF214 0.26 -1.5
220,284 + GFF214 0.30 -1.5
220,418 - GFF214 0.40 -1.6
220,432 + GFF214 0.41 -2.1
220,496 + GFF214 0.46 -1.8
220,497 - GFF214 0.46 -1.0
220,533 - GFF214 0.49 -0.9
220,640 + GFF214 0.58 -0.3
220,641 - GFF214 0.58 -1.6
220,641 - GFF214 0.58 -2.8
220,699 - GFF214 0.62 -0.9
220,699 - GFF214 0.62 -3.6
220,778 + GFF214 0.68 -1.3
220,778 + GFF214 0.68 -1.0
220,778 + GFF214 0.68 -1.3
220,779 - GFF214 0.68 -3.1
220,791 + GFF214 0.69 -1.0
220,792 - GFF214 0.69 -1.8
220,792 - GFF214 0.69 -1.0
220,792 - GFF214 0.69 -1.3
220,792 - GFF214 0.69 -0.4
220,792 - GFF214 0.69 -1.8
220,799 + GFF214 0.70 -1.8
220,799 + GFF214 0.70 -1.6
220,800 - GFF214 0.70 -0.2
220,831 + GFF214 0.72 -2.3
220,831 + GFF214 0.72 -2.6
220,832 - GFF214 0.73 -2.2
220,844 + GFF214 0.73 -1.3
220,845 - GFF214 0.74 -1.3
220,845 - GFF214 0.74 -0.3
220,845 - GFF214 0.74 -1.0
220,845 - GFF214 0.74 -1.3
220,853 - GFF214 0.74 -1.7
220,929 + GFF214 0.80 -2.0
221,025 - GFF214 0.88 -1.9
221,029 - GFF214 0.88 -2.2
221,096 - -2.3
221,149 + -3.2
221,272 + -1.0
221,273 - +1.8
221,273 - -0.3
221,273 - +0.1
221,273 - +0.4
221,355 - GFF215 0.16 -0.7
221,451 + GFF215 0.30 -0.3
221,470 + GFF215 0.33 +0.2
221,471 - GFF215 0.33 -0.6
221,471 - GFF215 0.33 -0.3
221,471 - GFF215 0.33 -1.3
221,595 - GFF215 0.51 -0.3
221,674 + GFF215 0.62 +1.3
221,674 + GFF215 0.62 +1.0
221,675 - GFF215 0.62 +0.4
221,976 + -1.1
222,062 + GFF216 0.13 -0.4
222,097 + GFF216 0.16 -0.7
222,098 - GFF216 0.16 -1.6
222,153 + GFF216 0.21 -0.4
222,153 + GFF216 0.21 +0.0

Or see this region's nucleotide sequence