Strain Fitness in Methylophilus sp. DMC18 around GFF2136

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2134 and GFF2135 are separated by 10 nucleotidesGFF2135 and GFF2136 are separated by 12 nucleotidesGFF2136 and GFF2137 are separated by 1 nucleotidesGFF2137 and GFF2138 are separated by 8 nucleotides GFF2134 - Serine/threonine-protein kinase PknD, at 181,563 to 182,498 GFF2134 GFF2135 - hypothetical protein, at 182,509 to 183,426 GFF2135 GFF2136 - Ribonuclease PH, at 183,439 to 184,158 GFF2136 GFF2137 - dITP/XTP pyrophosphatase, at 184,160 to 184,783 GFF2137 GFF2138 - hypothetical protein, at 184,792 to 185,007 GFF2138 Position (kb) 183 184 185Strain fitness (log2 ratio) -2 -1 0 1 2at 182.508 kb on + strandat 182.554 kb on + strandat 182.554 kb on + strandat 182.554 kb on + strandat 182.554 kb on + strandat 182.554 kb on + strandat 182.554 kb on + strandat 182.555 kb on - strandat 182.556 kb on + strandat 182.557 kb on - strandat 182.575 kb on + strandat 182.581 kb on + strandat 182.703 kb on + strand, within GFF2135at 182.703 kb on + strand, within GFF2135at 182.704 kb on - strand, within GFF2135at 182.704 kb on - strand, within GFF2135at 182.704 kb on - strand, within GFF2135at 182.704 kb on - strand, within GFF2135at 182.875 kb on + strand, within GFF2135at 182.875 kb on + strand, within GFF2135at 182.875 kb on + strand, within GFF2135at 182.881 kb on + strand, within GFF2135at 182.949 kb on + strand, within GFF2135at 182.999 kb on - strand, within GFF2135at 183.000 kb on + strand, within GFF2135at 183.121 kb on - strand, within GFF2135at 183.195 kb on + strand, within GFF2135at 183.195 kb on + strand, within GFF2135at 183.195 kb on + strand, within GFF2135at 183.198 kb on + strand, within GFF2135at 183.198 kb on + strand, within GFF2135at 183.198 kb on + strand, within GFF2135at 183.199 kb on - strand, within GFF2135at 183.199 kb on - strand, within GFF2135at 183.210 kb on + strand, within GFF2135at 183.210 kb on + strand, within GFF2135at 183.281 kb on + strand, within GFF2135at 183.282 kb on - strand, within GFF2135at 183.344 kb on + strandat 183.344 kb on + strandat 183.344 kb on + strandat 183.344 kb on + strandat 183.344 kb on + strandat 183.344 kb on + strandat 183.344 kb on + strandat 183.345 kb on - strandat 183.345 kb on - strandat 183.386 kb on + strandat 183.387 kb on - strandat 183.420 kb on + strandat 183.420 kb on + strandat 183.421 kb on - strandat 183.424 kb on + strandat 183.424 kb on + strandat 183.425 kb on - strandat 183.425 kb on - strandat 183.425 kb on - strandat 183.425 kb on - strandat 183.435 kb on - strandat 183.435 kb on - strandat 183.499 kb on + strandat 183.499 kb on + strandat 183.499 kb on + strandat 183.500 kb on - strandat 183.500 kb on - strandat 183.531 kb on + strand, within GFF2136at 183.558 kb on + strand, within GFF2136at 183.570 kb on - strand, within GFF2136at 183.600 kb on + strand, within GFF2136at 183.601 kb on - strand, within GFF2136at 183.649 kb on - strand, within GFF2136at 183.841 kb on + strand, within GFF2136at 183.842 kb on - strand, within GFF2136at 183.970 kb on + strand, within GFF2136at 183.970 kb on + strand, within GFF2136at 183.971 kb on - strand, within GFF2136at 183.972 kb on + strand, within GFF2136at 184.156 kb on + strandat 184.156 kb on + strandat 184.156 kb on + strandat 184.156 kb on + strandat 184.157 kb on - strandat 184.157 kb on - strandat 184.299 kb on - strand, within GFF2137at 184.420 kb on - strand, within GFF2137at 184.433 kb on + strand, within GFF2137at 184.434 kb on - strand, within GFF2137at 184.434 kb on - strand, within GFF2137at 184.489 kb on + strand, within GFF2137at 184.489 kb on + strand, within GFF2137at 184.490 kb on - strand, within GFF2137at 184.599 kb on + strand, within GFF2137at 184.600 kb on - strand, within GFF2137at 184.995 kb on + strandat 184.995 kb on + strandat 184.995 kb on + strandat 184.995 kb on + strandat 185.005 kb on + strandat 185.005 kb on + strandat 185.006 kb on - strandat 185.020 kb on + strandat 185.020 kb on + strandat 185.037 kb on + strandat 185.076 kb on - strandat 185.085 kb on - strandat 185.137 kb on + strandat 185.138 kb on - strandat 185.138 kb on - strandat 185.152 kb on + strandat 185.153 kb on - strandat 185.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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182,508 + -0.6
182,554 + +0.1
182,554 + +0.6
182,554 + -1.3
182,554 + -1.1
182,554 + -0.2
182,554 + +0.4
182,555 - -1.1
182,556 + -0.6
182,557 - -0.2
182,575 + -0.9
182,581 + -0.7
182,703 + GFF2135 0.21 -0.3
182,703 + GFF2135 0.21 -2.1
182,704 - GFF2135 0.21 -0.6
182,704 - GFF2135 0.21 -1.6
182,704 - GFF2135 0.21 +0.9
182,704 - GFF2135 0.21 -0.3
182,875 + GFF2135 0.40 -0.3
182,875 + GFF2135 0.40 -1.0
182,875 + GFF2135 0.40 +0.9
182,881 + GFF2135 0.41 -1.1
182,949 + GFF2135 0.48 -1.1
182,999 - GFF2135 0.53 -0.4
183,000 + GFF2135 0.53 +1.4
183,121 - GFF2135 0.67 -1.4
183,195 + GFF2135 0.75 -0.3
183,195 + GFF2135 0.75 -1.1
183,195 + GFF2135 0.75 -0.2
183,198 + GFF2135 0.75 -1.0
183,198 + GFF2135 0.75 +2.2
183,198 + GFF2135 0.75 -1.6
183,199 - GFF2135 0.75 -0.3
183,199 - GFF2135 0.75 -1.0
183,210 + GFF2135 0.76 -0.3
183,210 + GFF2135 0.76 -0.1
183,281 + GFF2135 0.84 -1.1
183,282 - GFF2135 0.84 +0.2
183,344 + +0.2
183,344 + -0.6
183,344 + +0.4
183,344 + -0.1
183,344 + +0.1
183,344 + -0.6
183,344 + +0.2
183,345 - -0.8
183,345 - -0.5
183,386 + -1.3
183,387 - +0.2
183,420 + -0.9
183,420 + +0.9
183,421 - +1.5
183,424 + -0.6
183,424 + -1.9
183,425 - +0.4
183,425 - -1.7
183,425 - -0.1
183,425 - +0.4
183,435 - -2.4
183,435 - +0.9
183,499 + -1.9
183,499 + +0.3
183,499 + -0.5
183,500 - -1.4
183,500 - +0.3
183,531 + GFF2136 0.13 -0.3
183,558 + GFF2136 0.17 -2.2
183,570 - GFF2136 0.18 -0.6
183,600 + GFF2136 0.22 -0.5
183,601 - GFF2136 0.23 -0.8
183,649 - GFF2136 0.29 -0.1
183,841 + GFF2136 0.56 +0.4
183,842 - GFF2136 0.56 -0.8
183,970 + GFF2136 0.74 -2.0
183,970 + GFF2136 0.74 -1.0
183,971 - GFF2136 0.74 +0.9
183,972 + GFF2136 0.74 -0.6
184,156 + +0.3
184,156 + +0.3
184,156 + -0.9
184,156 + +0.6
184,157 - -0.5
184,157 - -0.4
184,299 - GFF2137 0.22 -1.5
184,420 - GFF2137 0.42 -1.8
184,433 + GFF2137 0.44 +0.5
184,434 - GFF2137 0.44 +0.7
184,434 - GFF2137 0.44 -0.1
184,489 + GFF2137 0.53 -0.2
184,489 + GFF2137 0.53 -0.3
184,490 - GFF2137 0.53 -0.6
184,599 + GFF2137 0.70 -1.6
184,600 - GFF2137 0.71 -0.6
184,995 + -0.1
184,995 + +0.9
184,995 + -0.1
184,995 + +0.2
185,005 + +0.4
185,005 + +0.1
185,006 - +0.0
185,020 + -0.4
185,020 + +0.9
185,037 + -0.0
185,076 - -0.5
185,085 - -0.1
185,137 + -1.1
185,138 - -0.4
185,138 - +0.9
185,152 + -0.3
185,153 - -0.9
185,153 - -0.1

Or see this region's nucleotide sequence