Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF208 and GFF209 are separated by 36 nucleotides GFF209 and GFF210 are separated by 20 nucleotides GFF210 and GFF211 are separated by 344 nucleotides
GFF208 - Bicarbonate transport ATP-binding protein CmpD, at 212,997 to 213,806
GFF208
GFF209 - Nitrate import permease protein NrtB, at 213,843 to 214,778
GFF209
GFF210 - Nitrate/nitrite binding protein NrtA, at 214,799 to 216,100
GFF210
GFF211 - Serine/threonine-protein kinase PknD, at 216,445 to 218,235
GFF211
Position (kb) 214
215
216
217 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 213.850 kb on + strand at 213.850 kb on + strand at 213.850 kb on + strand at 213.850 kb on + strand at 213.851 kb on - strand at 213.851 kb on - strand at 213.854 kb on + strand at 213.854 kb on + strand at 213.854 kb on + strand at 213.854 kb on + strand at 213.855 kb on - strand at 213.855 kb on - strand at 213.855 kb on - strand at 213.855 kb on - strand at 213.855 kb on - strand at 214.064 kb on - strand, within GFF209 at 214.064 kb on - strand, within GFF209 at 214.075 kb on + strand, within GFF209 at 214.123 kb on - strand, within GFF209 at 214.139 kb on + strand, within GFF209 at 214.139 kb on + strand, within GFF209 at 214.139 kb on + strand, within GFF209 at 214.140 kb on - strand, within GFF209 at 214.140 kb on - strand, within GFF209 at 214.140 kb on - strand, within GFF209 at 214.140 kb on - strand, within GFF209 at 214.141 kb on + strand, within GFF209 at 214.141 kb on + strand, within GFF209 at 214.141 kb on + strand, within GFF209 at 214.142 kb on - strand, within GFF209 at 214.142 kb on - strand, within GFF209 at 214.142 kb on - strand, within GFF209 at 214.246 kb on - strand, within GFF209 at 214.325 kb on + strand, within GFF209 at 214.325 kb on + strand, within GFF209 at 214.325 kb on + strand, within GFF209 at 214.326 kb on - strand, within GFF209 at 214.326 kb on - strand, within GFF209 at 214.326 kb on - strand, within GFF209 at 214.326 kb on - strand, within GFF209 at 214.326 kb on - strand, within GFF209 at 214.326 kb on - strand, within GFF209 at 214.456 kb on + strand, within GFF209 at 214.456 kb on + strand, within GFF209 at 214.456 kb on + strand, within GFF209 at 214.457 kb on - strand, within GFF209 at 214.457 kb on - strand, within GFF209 at 214.457 kb on - strand, within GFF209 at 214.760 kb on + strand at 214.760 kb on + strand at 214.800 kb on + strand at 214.801 kb on - strand at 214.828 kb on - strand at 214.843 kb on + strand at 214.843 kb on + strand at 214.930 kb on + strand, within GFF210 at 214.931 kb on - strand, within GFF210 at 214.932 kb on + strand, within GFF210 at 214.933 kb on - strand, within GFF210 at 214.971 kb on + strand, within GFF210 at 215.041 kb on - strand, within GFF210 at 215.079 kb on + strand, within GFF210 at 215.079 kb on + strand, within GFF210 at 215.079 kb on + strand, within GFF210 at 215.080 kb on - strand, within GFF210 at 215.080 kb on - strand, within GFF210 at 215.080 kb on - strand, within GFF210 at 215.080 kb on - strand, within GFF210 at 215.166 kb on + strand, within GFF210 at 215.166 kb on + strand, within GFF210 at 215.167 kb on - strand, within GFF210 at 215.167 kb on - strand, within GFF210 at 215.167 kb on - strand, within GFF210 at 215.223 kb on + strand, within GFF210 at 215.224 kb on - strand, within GFF210 at 215.224 kb on - strand, within GFF210 at 215.224 kb on - strand, within GFF210 at 215.332 kb on + strand, within GFF210 at 215.332 kb on + strand, within GFF210 at 215.333 kb on - strand, within GFF210 at 215.333 kb on - strand, within GFF210 at 215.371 kb on - strand, within GFF210 at 215.406 kb on + strand, within GFF210 at 215.456 kb on + strand, within GFF210 at 215.496 kb on + strand, within GFF210 at 215.497 kb on - strand, within GFF210 at 215.512 kb on - strand, within GFF210 at 215.514 kb on + strand, within GFF210 at 215.514 kb on + strand, within GFF210 at 215.514 kb on + strand, within GFF210 at 215.514 kb on + strand, within GFF210 at 215.515 kb on - strand, within GFF210 at 215.515 kb on - strand, within GFF210 at 215.515 kb on - strand, within GFF210 at 215.515 kb on - strand, within GFF210 at 215.515 kb on - strand, within GFF210 at 215.560 kb on + strand, within GFF210 at 215.627 kb on - strand, within GFF210 at 215.627 kb on - strand, within GFF210 at 215.717 kb on + strand, within GFF210 at 215.718 kb on - strand, within GFF210 at 215.718 kb on - strand, within GFF210 at 215.736 kb on + strand, within GFF210 at 215.736 kb on + strand, within GFF210 at 215.736 kb on + strand, within GFF210 at 215.736 kb on + strand, within GFF210 at 215.736 kb on + strand, within GFF210 at 215.737 kb on - strand, within GFF210 at 215.783 kb on + strand, within GFF210 at 215.783 kb on + strand, within GFF210 at 215.783 kb on + strand, within GFF210 at 215.784 kb on - strand, within GFF210 at 215.784 kb on - strand, within GFF210 at 215.784 kb on - strand, within GFF210 at 215.830 kb on - strand, within GFF210 at 215.830 kb on - strand, within GFF210 at 215.864 kb on - strand, within GFF210 at 215.864 kb on - strand, within GFF210 at 216.011 kb on - strand at 216.011 kb on - strand at 216.016 kb on + strand at 216.145 kb on - strand at 216.183 kb on - strand at 216.183 kb on - strand at 216.183 kb on - strand at 216.243 kb on + strand at 216.243 kb on + strand at 216.243 kb on + strand at 216.243 kb on + strand at 216.244 kb on - strand at 216.244 kb on - strand at 216.244 kb on - strand at 216.244 kb on - strand at 216.248 kb on + strand at 216.248 kb on + strand at 216.248 kb on + strand at 216.248 kb on + strand at 216.248 kb on + strand at 216.249 kb on - strand at 216.249 kb on - strand at 216.263 kb on + strand at 216.287 kb on - strand at 216.316 kb on + strand at 216.317 kb on - strand at 216.317 kb on - strand at 216.351 kb on + strand at 216.351 kb on + strand at 216.351 kb on + strand at 216.351 kb on + strand at 216.352 kb on - strand at 216.352 kb on - strand at 216.352 kb on - strand at 216.352 kb on - strand at 216.352 kb on - strand at 216.352 kb on - strand at 216.446 kb on + strand at 216.458 kb on + strand at 216.459 kb on - strand at 216.459 kb on - strand at 216.543 kb on + strand at 216.543 kb on + strand at 216.543 kb on + strand at 216.544 kb on - strand at 216.554 kb on - strand at 216.556 kb on + strand at 216.557 kb on - strand at 216.562 kb on + strand at 216.675 kb on - strand, within GFF211 at 216.748 kb on - strand, within GFF211 at 216.749 kb on + strand, within GFF211 at 216.767 kb on + strand, within GFF211 at 216.767 kb on + strand, within GFF211 at 216.768 kb on - strand, within GFF211 at 216.797 kb on - strand, within GFF211 at 216.846 kb on - strand, within GFF211 at 216.846 kb on - strand, within GFF211 at 216.866 kb on + strand, within GFF211 at 216.867 kb on - strand, within GFF211 at 216.867 kb on - strand, within GFF211 at 216.956 kb on - strand, within GFF211 at 216.956 kb on - strand, within GFF211 at 217.039 kb on - strand, within GFF211
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 213,850 + -1.0 213,850 + -1.3 213,850 + -0.6 213,850 + -2.2 213,851 - +0.0 213,851 - -0.6 213,854 + -1.3 213,854 + -0.3 213,854 + -0.6 213,854 + -0.6 213,855 - -1.6 213,855 - -0.6 213,855 - +0.7 213,855 - -0.2 213,855 - +0.6 214,064 - GFF209 0.24 -1.1 214,064 - GFF209 0.24 +0.0 214,075 + GFF209 0.25 -2.0 214,123 - GFF209 0.30 +0.0 214,139 + GFF209 0.32 -0.3 214,139 + GFF209 0.32 -2.9 214,139 + GFF209 0.32 -1.5 214,140 - GFF209 0.32 -1.0 214,140 - GFF209 0.32 -1.3 214,140 - GFF209 0.32 +0.4 214,140 - GFF209 0.32 -1.7 214,141 + GFF209 0.32 +0.0 214,141 + GFF209 0.32 -1.3 214,141 + GFF209 0.32 -1.4 214,142 - GFF209 0.32 +0.0 214,142 - GFF209 0.32 +0.4 214,142 - GFF209 0.32 +0.5 214,246 - GFF209 0.43 -0.8 214,325 + GFF209 0.51 -1.8 214,325 + GFF209 0.51 -2.0 214,325 + GFF209 0.51 -0.6 214,326 - GFF209 0.52 +0.0 214,326 - GFF209 0.52 -0.9 214,326 - GFF209 0.52 -2.3 214,326 - GFF209 0.52 -1.6 214,326 - GFF209 0.52 -0.3 214,326 - GFF209 0.52 -0.6 214,456 + GFF209 0.65 -1.3 214,456 + GFF209 0.65 -2.0 214,456 + GFF209 0.65 -1.3 214,457 - GFF209 0.66 -0.7 214,457 - GFF209 0.66 +0.0 214,457 - GFF209 0.66 -0.6 214,760 + -0.9 214,760 + -1.2 214,800 + -2.4 214,801 - -1.2 214,828 - -0.7 214,843 + -0.3 214,843 + -0.6 214,930 + GFF210 0.10 -0.8 214,931 - GFF210 0.10 -0.6 214,932 + GFF210 0.10 -2.5 214,933 - GFF210 0.10 +1.3 214,971 + GFF210 0.13 -1.0 215,041 - GFF210 0.19 -0.3 215,079 + GFF210 0.22 -0.2 215,079 + GFF210 0.22 -1.6 215,079 + GFF210 0.22 -2.0 215,080 - GFF210 0.22 -0.6 215,080 - GFF210 0.22 -0.2 215,080 - GFF210 0.22 -0.8 215,080 - GFF210 0.22 -0.3 215,166 + GFF210 0.28 -1.2 215,166 + GFF210 0.28 +0.6 215,167 - GFF210 0.28 -0.6 215,167 - GFF210 0.28 -1.1 215,167 - GFF210 0.28 +0.6 215,223 + GFF210 0.33 -1.0 215,224 - GFF210 0.33 -0.2 215,224 - GFF210 0.33 +0.3 215,224 - GFF210 0.33 -2.2 215,332 + GFF210 0.41 -2.2 215,332 + GFF210 0.41 -1.0 215,333 - GFF210 0.41 -1.5 215,333 - GFF210 0.41 -2.0 215,371 - GFF210 0.44 -0.8 215,406 + GFF210 0.47 -0.8 215,456 + GFF210 0.50 -1.0 215,496 + GFF210 0.54 -1.3 215,497 - GFF210 0.54 +0.2 215,512 - GFF210 0.55 +0.2 215,514 + GFF210 0.55 -2.2 215,514 + GFF210 0.55 -1.3 215,514 + GFF210 0.55 -0.7 215,514 + GFF210 0.55 -1.2 215,515 - GFF210 0.55 -0.6 215,515 - GFF210 0.55 -0.6 215,515 - GFF210 0.55 -0.2 215,515 - GFF210 0.55 +0.0 215,515 - GFF210 0.55 -0.6 215,560 + GFF210 0.58 -2.0 215,627 - GFF210 0.64 +0.5 215,627 - GFF210 0.64 -0.3 215,717 + GFF210 0.71 -0.8 215,718 - GFF210 0.71 -1.6 215,718 - GFF210 0.71 -0.3 215,736 + GFF210 0.72 -1.5 215,736 + GFF210 0.72 -0.5 215,736 + GFF210 0.72 -2.0 215,736 + GFF210 0.72 -1.8 215,736 + GFF210 0.72 -1.2 215,737 - GFF210 0.72 -0.7 215,783 + GFF210 0.76 +0.4 215,783 + GFF210 0.76 -1.6 215,783 + GFF210 0.76 -0.7 215,784 - GFF210 0.76 -0.8 215,784 - GFF210 0.76 -0.5 215,784 - GFF210 0.76 +0.7 215,830 - GFF210 0.79 -1.5 215,830 - GFF210 0.79 -1.3 215,864 - GFF210 0.82 -1.3 215,864 - GFF210 0.82 -0.6 216,011 - +0.6 216,011 - -0.6 216,016 + -2.7 216,145 - -1.0 216,183 - +0.0 216,183 - -0.6 216,183 - +0.6 216,243 + -1.7 216,243 + -1.7 216,243 + -1.0 216,243 + -1.3 216,244 - -1.5 216,244 - +0.9 216,244 - -0.9 216,244 - +0.3 216,248 + -1.6 216,248 + +1.0 216,248 + -2.0 216,248 + -1.3 216,248 + -0.9 216,249 - -1.3 216,249 - -1.3 216,263 + -2.3 216,287 - -0.6 216,316 + -1.3 216,317 - -0.4 216,317 - -0.4 216,351 + -2.3 216,351 + -1.3 216,351 + -0.5 216,351 + -0.3 216,352 - +0.0 216,352 - -1.2 216,352 - -0.5 216,352 - -1.0 216,352 - -1.7 216,352 - -0.8 216,446 + -1.0 216,458 + -3.2 216,459 - +0.4 216,459 - +0.6 216,543 + +0.0 216,543 + -0.2 216,543 + -0.6 216,544 - -1.1 216,554 - -0.2 216,556 + -0.0 216,557 - -1.6 216,562 + -0.1 216,675 - GFF211 0.13 -0.5 216,748 - GFF211 0.17 -0.3 216,749 + GFF211 0.17 -0.8 216,767 + GFF211 0.18 -0.2 216,767 + GFF211 0.18 -0.6 216,768 - GFF211 0.18 -0.6 216,797 - GFF211 0.20 +0.0 216,846 - GFF211 0.22 +0.8 216,846 - GFF211 0.22 -0.2 216,866 + GFF211 0.24 +0.4 216,867 - GFF211 0.24 -0.5 216,867 - GFF211 0.24 +0.8 216,956 - GFF211 0.29 +0.0 216,956 - GFF211 0.29 -0.1 217,039 - GFF211 0.33 -1.0
Or see this region's nucleotide sequence