Strain Fitness in Methylophilus sp. DMC18 around GFF2090

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2089 and GFF2090 are separated by 96 nucleotidesGFF2090 and GFF2091 are separated by 68 nucleotides GFF2089 - Bifunctional protein GlmU, at 135,221 to 136,591 GFF2089 GFF2090 - ATP synthase epsilon chain, at 136,688 to 137,113 GFF2090 GFF2091 - ATP synthase subunit beta 1, at 137,182 to 138,618 GFF2091 Position (kb) 136 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1at 136.602 kb on + strandat 136.603 kb on - strandat 136.603 kb on - strandat 136.658 kb on + strandat 136.664 kb on + strandat 136.671 kb on - strandat 136.671 kb on - strandat 136.671 kb on - strandat 136.671 kb on - strandat 136.677 kb on + strandat 136.689 kb on + strandat 136.689 kb on + strandat 136.689 kb on + strandat 136.689 kb on + strandat 136.689 kb on + strandat 136.690 kb on - strandat 136.690 kb on - strandat 136.690 kb on - strandat 136.690 kb on - strandat 136.690 kb on - strandat 136.690 kb on - strandat 136.702 kb on + strandat 136.703 kb on - strandat 136.768 kb on - strand, within GFF2090at 136.826 kb on - strand, within GFF2090at 136.826 kb on - strand, within GFF2090at 136.826 kb on - strand, within GFF2090

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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136,602 + +0.1
136,603 - -2.8
136,603 - -1.4
136,658 + -1.1
136,664 + -1.4
136,671 - -0.8
136,671 - -0.3
136,671 - -1.2
136,671 - -1.9
136,677 + -0.6
136,689 + +0.5
136,689 + -0.2
136,689 + -0.3
136,689 + -0.2
136,689 + -0.6
136,690 - +0.0
136,690 - -1.1
136,690 - -0.8
136,690 - -0.1
136,690 - +0.9
136,690 - -0.6
136,702 + -1.2
136,703 - -1.2
136,768 - GFF2090 0.19 -0.1
136,826 - GFF2090 0.32 -1.1
136,826 - GFF2090 0.32 -1.1
136,826 - GFF2090 0.32 -2.8

Or see this region's nucleotide sequence