Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF207 and GFF208 are separated by 100 nucleotides GFF208 and GFF209 are separated by 36 nucleotides GFF209 and GFF210 are separated by 20 nucleotides
GFF207 - hypothetical protein, at 211,445 to 212,896
GFF207
GFF208 - Bicarbonate transport ATP-binding protein CmpD, at 212,997 to 213,806
GFF208
GFF209 - Nitrate import permease protein NrtB, at 213,843 to 214,778
GFF209
GFF210 - Nitrate/nitrite binding protein NrtA, at 214,799 to 216,100
GFF210
Position (kb) 213
214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 212.882 kb on + strand at 212.883 kb on - strand at 212.883 kb on - strand at 212.883 kb on - strand at 212.952 kb on + strand at 212.998 kb on + strand at 212.998 kb on + strand at 212.999 kb on - strand at 212.999 kb on - strand at 213.026 kb on - strand at 213.062 kb on - strand at 213.105 kb on + strand, within GFF208 at 213.310 kb on - strand, within GFF208 at 213.494 kb on - strand, within GFF208 at 213.639 kb on + strand, within GFF208 at 213.639 kb on + strand, within GFF208 at 213.717 kb on + strand, within GFF208 at 213.778 kb on + strand at 213.793 kb on - strand at 213.850 kb on + strand at 213.850 kb on + strand at 213.850 kb on + strand at 213.850 kb on + strand at 213.851 kb on - strand at 213.851 kb on - strand at 213.854 kb on + strand at 213.854 kb on + strand at 213.854 kb on + strand at 213.854 kb on + strand at 213.855 kb on - strand at 213.855 kb on - strand at 213.855 kb on - strand at 213.855 kb on - strand at 213.855 kb on - strand at 214.064 kb on - strand, within GFF209 at 214.064 kb on - strand, within GFF209 at 214.075 kb on + strand, within GFF209 at 214.123 kb on - strand, within GFF209 at 214.139 kb on + strand, within GFF209 at 214.139 kb on + strand, within GFF209 at 214.139 kb on + strand, within GFF209 at 214.140 kb on - strand, within GFF209 at 214.140 kb on - strand, within GFF209 at 214.140 kb on - strand, within GFF209 at 214.140 kb on - strand, within GFF209 at 214.141 kb on + strand, within GFF209 at 214.141 kb on + strand, within GFF209 at 214.141 kb on + strand, within GFF209 at 214.142 kb on - strand, within GFF209 at 214.142 kb on - strand, within GFF209 at 214.142 kb on - strand, within GFF209 at 214.246 kb on - strand, within GFF209 at 214.325 kb on + strand, within GFF209 at 214.325 kb on + strand, within GFF209 at 214.325 kb on + strand, within GFF209 at 214.326 kb on - strand, within GFF209 at 214.326 kb on - strand, within GFF209 at 214.326 kb on - strand, within GFF209 at 214.326 kb on - strand, within GFF209 at 214.326 kb on - strand, within GFF209 at 214.326 kb on - strand, within GFF209 at 214.456 kb on + strand, within GFF209 at 214.456 kb on + strand, within GFF209 at 214.456 kb on + strand, within GFF209 at 214.457 kb on - strand, within GFF209 at 214.457 kb on - strand, within GFF209 at 214.457 kb on - strand, within GFF209 at 214.760 kb on + strand at 214.760 kb on + strand at 214.800 kb on + strand at 214.801 kb on - strand at 214.828 kb on - strand at 214.843 kb on + strand at 214.843 kb on + strand at 214.930 kb on + strand, within GFF210 at 214.931 kb on - strand, within GFF210 at 214.932 kb on + strand, within GFF210 at 214.933 kb on - strand, within GFF210 at 214.971 kb on + strand, within GFF210 at 215.041 kb on - strand, within GFF210 at 215.079 kb on + strand, within GFF210 at 215.079 kb on + strand, within GFF210 at 215.079 kb on + strand, within GFF210 at 215.080 kb on - strand, within GFF210 at 215.080 kb on - strand, within GFF210 at 215.080 kb on - strand, within GFF210 at 215.080 kb on - strand, within GFF210 at 215.166 kb on + strand, within GFF210 at 215.166 kb on + strand, within GFF210 at 215.167 kb on - strand, within GFF210 at 215.167 kb on - strand, within GFF210 at 215.167 kb on - strand, within GFF210 at 215.223 kb on + strand, within GFF210 at 215.224 kb on - strand, within GFF210 at 215.224 kb on - strand, within GFF210 at 215.224 kb on - strand, within GFF210 at 215.332 kb on + strand, within GFF210 at 215.332 kb on + strand, within GFF210 at 215.333 kb on - strand, within GFF210 at 215.333 kb on - strand, within GFF210 at 215.371 kb on - strand, within GFF210 at 215.406 kb on + strand, within GFF210 at 215.456 kb on + strand, within GFF210 at 215.496 kb on + strand, within GFF210 at 215.497 kb on - strand, within GFF210 at 215.512 kb on - strand, within GFF210 at 215.514 kb on + strand, within GFF210 at 215.514 kb on + strand, within GFF210 at 215.514 kb on + strand, within GFF210 at 215.514 kb on + strand, within GFF210 at 215.515 kb on - strand, within GFF210 at 215.515 kb on - strand, within GFF210 at 215.515 kb on - strand, within GFF210 at 215.515 kb on - strand, within GFF210 at 215.515 kb on - strand, within GFF210 at 215.560 kb on + strand, within GFF210 at 215.627 kb on - strand, within GFF210 at 215.627 kb on - strand, within GFF210 at 215.717 kb on + strand, within GFF210 at 215.718 kb on - strand, within GFF210 at 215.718 kb on - strand, within GFF210 at 215.736 kb on + strand, within GFF210 at 215.736 kb on + strand, within GFF210 at 215.736 kb on + strand, within GFF210 at 215.736 kb on + strand, within GFF210 at 215.736 kb on + strand, within GFF210 at 215.737 kb on - strand, within GFF210
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 212,882 + -0.7 212,883 - -0.8 212,883 - -0.8 212,883 - +0.7 212,952 + -2.0 212,998 + -1.2 212,998 + -3.5 212,999 - -1.5 212,999 - -0.2 213,026 - +0.7 213,062 - -1.3 213,105 + GFF208 0.13 +0.0 213,310 - GFF208 0.39 +0.2 213,494 - GFF208 0.61 -2.2 213,639 + GFF208 0.79 -1.4 213,639 + GFF208 0.79 -0.5 213,717 + GFF208 0.89 -1.9 213,778 + -2.6 213,793 - -0.2 213,850 + -1.0 213,850 + -1.3 213,850 + -0.6 213,850 + -2.2 213,851 - +0.0 213,851 - -0.6 213,854 + -1.3 213,854 + -0.3 213,854 + -0.6 213,854 + -0.6 213,855 - -1.6 213,855 - -0.6 213,855 - +0.7 213,855 - -0.2 213,855 - +0.6 214,064 - GFF209 0.24 -1.1 214,064 - GFF209 0.24 +0.0 214,075 + GFF209 0.25 -2.0 214,123 - GFF209 0.30 +0.0 214,139 + GFF209 0.32 -0.3 214,139 + GFF209 0.32 -2.9 214,139 + GFF209 0.32 -1.5 214,140 - GFF209 0.32 -1.0 214,140 - GFF209 0.32 -1.3 214,140 - GFF209 0.32 +0.4 214,140 - GFF209 0.32 -1.7 214,141 + GFF209 0.32 +0.0 214,141 + GFF209 0.32 -1.3 214,141 + GFF209 0.32 -1.4 214,142 - GFF209 0.32 +0.0 214,142 - GFF209 0.32 +0.4 214,142 - GFF209 0.32 +0.5 214,246 - GFF209 0.43 -0.8 214,325 + GFF209 0.51 -1.8 214,325 + GFF209 0.51 -2.0 214,325 + GFF209 0.51 -0.6 214,326 - GFF209 0.52 +0.0 214,326 - GFF209 0.52 -0.9 214,326 - GFF209 0.52 -2.3 214,326 - GFF209 0.52 -1.6 214,326 - GFF209 0.52 -0.3 214,326 - GFF209 0.52 -0.6 214,456 + GFF209 0.65 -1.3 214,456 + GFF209 0.65 -2.0 214,456 + GFF209 0.65 -1.3 214,457 - GFF209 0.66 -0.7 214,457 - GFF209 0.66 +0.0 214,457 - GFF209 0.66 -0.6 214,760 + -0.9 214,760 + -1.2 214,800 + -2.4 214,801 - -1.2 214,828 - -0.7 214,843 + -0.3 214,843 + -0.6 214,930 + GFF210 0.10 -0.8 214,931 - GFF210 0.10 -0.6 214,932 + GFF210 0.10 -2.5 214,933 - GFF210 0.10 +1.3 214,971 + GFF210 0.13 -1.0 215,041 - GFF210 0.19 -0.3 215,079 + GFF210 0.22 -0.2 215,079 + GFF210 0.22 -1.6 215,079 + GFF210 0.22 -2.0 215,080 - GFF210 0.22 -0.6 215,080 - GFF210 0.22 -0.2 215,080 - GFF210 0.22 -0.8 215,080 - GFF210 0.22 -0.3 215,166 + GFF210 0.28 -1.2 215,166 + GFF210 0.28 +0.6 215,167 - GFF210 0.28 -0.6 215,167 - GFF210 0.28 -1.1 215,167 - GFF210 0.28 +0.6 215,223 + GFF210 0.33 -1.0 215,224 - GFF210 0.33 -0.2 215,224 - GFF210 0.33 +0.3 215,224 - GFF210 0.33 -2.2 215,332 + GFF210 0.41 -2.2 215,332 + GFF210 0.41 -1.0 215,333 - GFF210 0.41 -1.5 215,333 - GFF210 0.41 -2.0 215,371 - GFF210 0.44 -0.8 215,406 + GFF210 0.47 -0.8 215,456 + GFF210 0.50 -1.0 215,496 + GFF210 0.54 -1.3 215,497 - GFF210 0.54 +0.2 215,512 - GFF210 0.55 +0.2 215,514 + GFF210 0.55 -2.2 215,514 + GFF210 0.55 -1.3 215,514 + GFF210 0.55 -0.7 215,514 + GFF210 0.55 -1.2 215,515 - GFF210 0.55 -0.6 215,515 - GFF210 0.55 -0.6 215,515 - GFF210 0.55 -0.2 215,515 - GFF210 0.55 +0.0 215,515 - GFF210 0.55 -0.6 215,560 + GFF210 0.58 -2.0 215,627 - GFF210 0.64 +0.5 215,627 - GFF210 0.64 -0.3 215,717 + GFF210 0.71 -0.8 215,718 - GFF210 0.71 -1.6 215,718 - GFF210 0.71 -0.3 215,736 + GFF210 0.72 -1.5 215,736 + GFF210 0.72 -0.5 215,736 + GFF210 0.72 -2.0 215,736 + GFF210 0.72 -1.8 215,736 + GFF210 0.72 -1.2 215,737 - GFF210 0.72 -0.7
Or see this region's nucleotide sequence