Strain Fitness in Methylophilus sp. DMC18 around GFF208

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF207 and GFF208 are separated by 100 nucleotidesGFF208 and GFF209 are separated by 36 nucleotidesGFF209 and GFF210 are separated by 20 nucleotides GFF207 - hypothetical protein, at 211,445 to 212,896 GFF207 GFF208 - Bicarbonate transport ATP-binding protein CmpD, at 212,997 to 213,806 GFF208 GFF209 - Nitrate import permease protein NrtB, at 213,843 to 214,778 GFF209 GFF210 - Nitrate/nitrite binding protein NrtA, at 214,799 to 216,100 GFF210 Position (kb) 212 213 214Strain fitness (log2 ratio) -3 -2 -1 0 1at 212.005 kb on - strand, within GFF207at 212.005 kb on - strand, within GFF207at 212.057 kb on - strand, within GFF207at 212.125 kb on + strand, within GFF207at 212.303 kb on - strand, within GFF207at 212.303 kb on - strand, within GFF207at 212.371 kb on + strand, within GFF207at 212.458 kb on - strand, within GFF207at 212.458 kb on - strand, within GFF207at 212.481 kb on + strand, within GFF207at 212.542 kb on + strand, within GFF207at 212.640 kb on + strand, within GFF207at 212.640 kb on + strand, within GFF207at 212.640 kb on + strand, within GFF207at 212.641 kb on - strand, within GFF207at 212.697 kb on + strand, within GFF207at 212.698 kb on - strand, within GFF207at 212.698 kb on - strand, within GFF207at 212.793 kb on + strandat 212.793 kb on + strandat 212.794 kb on - strandat 212.794 kb on - strandat 212.794 kb on - strandat 212.882 kb on + strandat 212.883 kb on - strandat 212.883 kb on - strandat 212.883 kb on - strandat 212.952 kb on + strandat 212.998 kb on + strandat 212.998 kb on + strandat 212.999 kb on - strandat 212.999 kb on - strandat 213.026 kb on - strandat 213.062 kb on - strandat 213.105 kb on + strand, within GFF208at 213.310 kb on - strand, within GFF208at 213.494 kb on - strand, within GFF208at 213.639 kb on + strand, within GFF208at 213.639 kb on + strand, within GFF208at 213.717 kb on + strand, within GFF208at 213.778 kb on + strandat 213.793 kb on - strandat 213.850 kb on + strandat 213.850 kb on + strandat 213.850 kb on + strandat 213.850 kb on + strandat 213.851 kb on - strandat 213.851 kb on - strandat 213.854 kb on + strandat 213.854 kb on + strandat 213.854 kb on + strandat 213.854 kb on + strandat 213.855 kb on - strandat 213.855 kb on - strandat 213.855 kb on - strandat 213.855 kb on - strandat 213.855 kb on - strandat 214.064 kb on - strand, within GFF209at 214.064 kb on - strand, within GFF209at 214.075 kb on + strand, within GFF209at 214.123 kb on - strand, within GFF209at 214.139 kb on + strand, within GFF209at 214.139 kb on + strand, within GFF209at 214.139 kb on + strand, within GFF209at 214.140 kb on - strand, within GFF209at 214.140 kb on - strand, within GFF209at 214.140 kb on - strand, within GFF209at 214.140 kb on - strand, within GFF209at 214.141 kb on + strand, within GFF209at 214.141 kb on + strand, within GFF209at 214.141 kb on + strand, within GFF209at 214.142 kb on - strand, within GFF209at 214.142 kb on - strand, within GFF209at 214.142 kb on - strand, within GFF209at 214.246 kb on - strand, within GFF209at 214.325 kb on + strand, within GFF209at 214.325 kb on + strand, within GFF209at 214.325 kb on + strand, within GFF209at 214.326 kb on - strand, within GFF209at 214.326 kb on - strand, within GFF209at 214.326 kb on - strand, within GFF209at 214.326 kb on - strand, within GFF209at 214.326 kb on - strand, within GFF209at 214.326 kb on - strand, within GFF209at 214.456 kb on + strand, within GFF209at 214.456 kb on + strand, within GFF209at 214.456 kb on + strand, within GFF209at 214.457 kb on - strand, within GFF209at 214.457 kb on - strand, within GFF209at 214.457 kb on - strand, within GFF209at 214.760 kb on + strandat 214.760 kb on + strandat 214.800 kb on + strandat 214.801 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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212,005 - GFF207 0.39 +0.4
212,005 - GFF207 0.39 -1.0
212,057 - GFF207 0.42 -1.8
212,125 + GFF207 0.47 -0.8
212,303 - GFF207 0.59 -1.3
212,303 - GFF207 0.59 -1.6
212,371 + GFF207 0.64 -1.6
212,458 - GFF207 0.70 -2.3
212,458 - GFF207 0.70 -1.2
212,481 + GFF207 0.71 -3.2
212,542 + GFF207 0.76 +0.3
212,640 + GFF207 0.82 -2.1
212,640 + GFF207 0.82 -2.9
212,640 + GFF207 0.82 -1.0
212,641 - GFF207 0.82 -1.0
212,697 + GFF207 0.86 -1.3
212,698 - GFF207 0.86 +0.3
212,698 - GFF207 0.86 -0.4
212,793 + -1.0
212,793 + -1.5
212,794 - -1.2
212,794 - -1.3
212,794 - +0.2
212,882 + -0.7
212,883 - -0.8
212,883 - -0.8
212,883 - +0.7
212,952 + -2.0
212,998 + -1.2
212,998 + -3.5
212,999 - -1.5
212,999 - -0.2
213,026 - +0.7
213,062 - -1.3
213,105 + GFF208 0.13 +0.0
213,310 - GFF208 0.39 +0.2
213,494 - GFF208 0.61 -2.2
213,639 + GFF208 0.79 -1.4
213,639 + GFF208 0.79 -0.5
213,717 + GFF208 0.89 -1.9
213,778 + -2.6
213,793 - -0.2
213,850 + -1.0
213,850 + -1.3
213,850 + -0.6
213,850 + -2.2
213,851 - +0.0
213,851 - -0.6
213,854 + -1.3
213,854 + -0.3
213,854 + -0.6
213,854 + -0.6
213,855 - -1.6
213,855 - -0.6
213,855 - +0.7
213,855 - -0.2
213,855 - +0.6
214,064 - GFF209 0.24 -1.1
214,064 - GFF209 0.24 +0.0
214,075 + GFF209 0.25 -2.0
214,123 - GFF209 0.30 +0.0
214,139 + GFF209 0.32 -0.3
214,139 + GFF209 0.32 -2.9
214,139 + GFF209 0.32 -1.5
214,140 - GFF209 0.32 -1.0
214,140 - GFF209 0.32 -1.3
214,140 - GFF209 0.32 +0.4
214,140 - GFF209 0.32 -1.7
214,141 + GFF209 0.32 +0.0
214,141 + GFF209 0.32 -1.3
214,141 + GFF209 0.32 -1.4
214,142 - GFF209 0.32 +0.0
214,142 - GFF209 0.32 +0.4
214,142 - GFF209 0.32 +0.5
214,246 - GFF209 0.43 -0.8
214,325 + GFF209 0.51 -1.8
214,325 + GFF209 0.51 -2.0
214,325 + GFF209 0.51 -0.6
214,326 - GFF209 0.52 +0.0
214,326 - GFF209 0.52 -0.9
214,326 - GFF209 0.52 -2.3
214,326 - GFF209 0.52 -1.6
214,326 - GFF209 0.52 -0.3
214,326 - GFF209 0.52 -0.6
214,456 + GFF209 0.65 -1.3
214,456 + GFF209 0.65 -2.0
214,456 + GFF209 0.65 -1.3
214,457 - GFF209 0.66 -0.7
214,457 - GFF209 0.66 +0.0
214,457 - GFF209 0.66 -0.6
214,760 + -0.9
214,760 + -1.2
214,800 + -2.4
214,801 - -1.2

Or see this region's nucleotide sequence