Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF205 and GFF206 are separated by 20 nucleotides GFF206 and GFF207 are separated by 34 nucleotides GFF207 and GFF208 are separated by 100 nucleotides GFF208 and GFF209 are separated by 36 nucleotides
GFF205 - Nitrite reductase [NAD(P)H], at 208,181 to 210,607
GFF205
GFF206 - Siroheme synthase, at 210,628 to 211,410
GFF206
GFF207 - hypothetical protein, at 211,445 to 212,896
GFF207
GFF208 - Bicarbonate transport ATP-binding protein CmpD, at 212,997 to 213,806
GFF208
GFF209 - Nitrate import permease protein NrtB, at 213,843 to 214,778
GFF209
Position (kb) 211
212
213 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 210.480 kb on + strand at 210.480 kb on + strand at 210.480 kb on + strand at 210.480 kb on + strand at 210.480 kb on + strand at 210.481 kb on - strand at 210.481 kb on - strand at 210.481 kb on - strand at 210.511 kb on + strand at 210.511 kb on + strand at 210.512 kb on - strand at 210.519 kb on + strand at 210.520 kb on - strand at 210.520 kb on - strand at 210.520 kb on - strand at 210.520 kb on - strand at 210.520 kb on - strand at 210.520 kb on - strand at 210.603 kb on - strand at 210.603 kb on - strand at 210.629 kb on + strand at 210.730 kb on - strand, within GFF206 at 210.730 kb on - strand, within GFF206 at 210.744 kb on + strand, within GFF206 at 210.767 kb on + strand, within GFF206 at 210.834 kb on + strand, within GFF206 at 210.834 kb on + strand, within GFF206 at 211.005 kb on - strand, within GFF206 at 211.005 kb on - strand, within GFF206 at 211.025 kb on - strand, within GFF206 at 211.072 kb on - strand, within GFF206 at 211.221 kb on + strand, within GFF206 at 211.222 kb on - strand, within GFF206 at 211.222 kb on - strand, within GFF206 at 211.222 kb on - strand, within GFF206 at 211.388 kb on - strand at 211.392 kb on - strand at 211.447 kb on - strand at 211.453 kb on + strand at 211.453 kb on + strand at 211.454 kb on - strand at 211.454 kb on - strand at 211.454 kb on - strand at 211.454 kb on - strand at 211.455 kb on + strand at 211.455 kb on + strand at 211.455 kb on + strand at 211.455 kb on + strand at 211.456 kb on - strand at 211.456 kb on - strand at 211.456 kb on - strand at 211.456 kb on - strand at 211.456 kb on - strand at 211.456 kb on - strand at 211.456 kb on - strand at 211.542 kb on + strand at 211.543 kb on - strand at 211.543 kb on - strand at 211.561 kb on - strand at 211.561 kb on - strand at 211.561 kb on - strand at 211.672 kb on + strand, within GFF207 at 211.674 kb on + strand, within GFF207 at 211.674 kb on + strand, within GFF207 at 211.674 kb on + strand, within GFF207 at 211.674 kb on + strand, within GFF207 at 211.675 kb on - strand, within GFF207 at 211.704 kb on + strand, within GFF207 at 211.845 kb on + strand, within GFF207 at 211.845 kb on + strand, within GFF207 at 211.845 kb on + strand, within GFF207 at 211.845 kb on + strand, within GFF207 at 211.846 kb on - strand, within GFF207 at 211.850 kb on - strand, within GFF207 at 211.850 kb on - strand, within GFF207 at 211.851 kb on - strand, within GFF207 at 211.868 kb on + strand, within GFF207 at 211.868 kb on + strand, within GFF207 at 211.869 kb on - strand, within GFF207 at 211.881 kb on - strand, within GFF207 at 211.881 kb on - strand, within GFF207 at 211.926 kb on + strand, within GFF207 at 211.926 kb on + strand, within GFF207 at 211.926 kb on + strand, within GFF207 at 211.927 kb on - strand, within GFF207 at 211.927 kb on - strand, within GFF207 at 211.929 kb on + strand, within GFF207 at 211.929 kb on + strand, within GFF207 at 211.963 kb on - strand, within GFF207 at 211.963 kb on - strand, within GFF207 at 212.005 kb on - strand, within GFF207 at 212.005 kb on - strand, within GFF207 at 212.057 kb on - strand, within GFF207 at 212.125 kb on + strand, within GFF207 at 212.303 kb on - strand, within GFF207 at 212.303 kb on - strand, within GFF207 at 212.371 kb on + strand, within GFF207 at 212.458 kb on - strand, within GFF207 at 212.458 kb on - strand, within GFF207 at 212.481 kb on + strand, within GFF207 at 212.542 kb on + strand, within GFF207 at 212.640 kb on + strand, within GFF207 at 212.640 kb on + strand, within GFF207 at 212.640 kb on + strand, within GFF207 at 212.641 kb on - strand, within GFF207 at 212.697 kb on + strand, within GFF207 at 212.698 kb on - strand, within GFF207 at 212.698 kb on - strand, within GFF207 at 212.793 kb on + strand at 212.793 kb on + strand at 212.794 kb on - strand at 212.794 kb on - strand at 212.794 kb on - strand at 212.882 kb on + strand at 212.883 kb on - strand at 212.883 kb on - strand at 212.883 kb on - strand at 212.952 kb on + strand at 212.998 kb on + strand at 212.998 kb on + strand at 212.999 kb on - strand at 212.999 kb on - strand at 213.026 kb on - strand at 213.062 kb on - strand at 213.105 kb on + strand, within GFF208 at 213.310 kb on - strand, within GFF208 at 213.494 kb on - strand, within GFF208 at 213.639 kb on + strand, within GFF208 at 213.639 kb on + strand, within GFF208 at 213.717 kb on + strand, within GFF208 at 213.778 kb on + strand at 213.793 kb on - strand at 213.850 kb on + strand at 213.850 kb on + strand at 213.850 kb on + strand at 213.850 kb on + strand at 213.851 kb on - strand at 213.851 kb on - strand at 213.854 kb on + strand at 213.854 kb on + strand at 213.854 kb on + strand at 213.854 kb on + strand at 213.855 kb on - strand at 213.855 kb on - strand at 213.855 kb on - strand at 213.855 kb on - strand at 213.855 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 210,480 + -0.6 210,480 + -0.2 210,480 + -0.5 210,480 + -2.1 210,480 + -2.7 210,481 - -2.0 210,481 - -1.0 210,481 - -1.0 210,511 + -0.5 210,511 + -1.2 210,512 - -0.6 210,519 + +0.3 210,520 - -1.3 210,520 - -0.3 210,520 - -0.3 210,520 - -1.2 210,520 - -0.6 210,520 - -1.6 210,603 - -0.6 210,603 - -2.5 210,629 + -2.0 210,730 - GFF206 0.13 -1.0 210,730 - GFF206 0.13 -0.9 210,744 + GFF206 0.15 +0.0 210,767 + GFF206 0.18 -0.6 210,834 + GFF206 0.26 -1.6 210,834 + GFF206 0.26 -2.0 211,005 - GFF206 0.48 -1.2 211,005 - GFF206 0.48 -1.0 211,025 - GFF206 0.51 +0.3 211,072 - GFF206 0.57 -3.4 211,221 + GFF206 0.76 -0.9 211,222 - GFF206 0.76 +0.1 211,222 - GFF206 0.76 -1.5 211,222 - GFF206 0.76 +0.6 211,388 - -1.0 211,392 - -0.6 211,447 - +0.2 211,453 + -2.0 211,453 + +0.0 211,454 - -1.6 211,454 - -0.5 211,454 - +0.3 211,454 - -2.2 211,455 + -1.3 211,455 + -0.2 211,455 + -2.7 211,455 + -2.7 211,456 - -1.0 211,456 - +0.4 211,456 - -0.6 211,456 - -0.1 211,456 - -1.0 211,456 - -0.8 211,456 - -0.6 211,542 + -1.0 211,543 - -2.2 211,543 - -0.6 211,561 - -0.4 211,561 - -0.9 211,561 - -0.1 211,672 + GFF207 0.16 -0.1 211,674 + GFF207 0.16 +0.0 211,674 + GFF207 0.16 -1.1 211,674 + GFF207 0.16 -1.1 211,674 + GFF207 0.16 -0.6 211,675 - GFF207 0.16 -1.0 211,704 + GFF207 0.18 -2.4 211,845 + GFF207 0.28 +0.4 211,845 + GFF207 0.28 -1.8 211,845 + GFF207 0.28 +0.3 211,845 + GFF207 0.28 -3.5 211,846 - GFF207 0.28 -1.3 211,850 - GFF207 0.28 -1.3 211,850 - GFF207 0.28 -0.6 211,851 - GFF207 0.28 +0.0 211,868 + GFF207 0.29 +0.3 211,868 + GFF207 0.29 -1.3 211,869 - GFF207 0.29 -0.7 211,881 - GFF207 0.30 -2.1 211,881 - GFF207 0.30 -0.5 211,926 + GFF207 0.33 -2.5 211,926 + GFF207 0.33 -1.0 211,926 + GFF207 0.33 -1.0 211,927 - GFF207 0.33 -1.3 211,927 - GFF207 0.33 +0.0 211,929 + GFF207 0.33 -0.8 211,929 + GFF207 0.33 -0.8 211,963 - GFF207 0.36 -1.2 211,963 - GFF207 0.36 -0.4 212,005 - GFF207 0.39 +0.4 212,005 - GFF207 0.39 -1.0 212,057 - GFF207 0.42 -1.8 212,125 + GFF207 0.47 -0.8 212,303 - GFF207 0.59 -1.3 212,303 - GFF207 0.59 -1.6 212,371 + GFF207 0.64 -1.6 212,458 - GFF207 0.70 -2.3 212,458 - GFF207 0.70 -1.2 212,481 + GFF207 0.71 -3.2 212,542 + GFF207 0.76 +0.3 212,640 + GFF207 0.82 -2.1 212,640 + GFF207 0.82 -2.9 212,640 + GFF207 0.82 -1.0 212,641 - GFF207 0.82 -1.0 212,697 + GFF207 0.86 -1.3 212,698 - GFF207 0.86 +0.3 212,698 - GFF207 0.86 -0.4 212,793 + -1.0 212,793 + -1.5 212,794 - -1.2 212,794 - -1.3 212,794 - +0.2 212,882 + -0.7 212,883 - -0.8 212,883 - -0.8 212,883 - +0.7 212,952 + -2.0 212,998 + -1.2 212,998 + -3.5 212,999 - -1.5 212,999 - -0.2 213,026 - +0.7 213,062 - -1.3 213,105 + GFF208 0.13 +0.0 213,310 - GFF208 0.39 +0.2 213,494 - GFF208 0.61 -2.2 213,639 + GFF208 0.79 -1.4 213,639 + GFF208 0.79 -0.5 213,717 + GFF208 0.89 -1.9 213,778 + -2.6 213,793 - -0.2 213,850 + -1.0 213,850 + -1.3 213,850 + -0.6 213,850 + -2.2 213,851 - +0.0 213,851 - -0.6 213,854 + -1.3 213,854 + -0.3 213,854 + -0.6 213,854 + -0.6 213,855 - -1.6 213,855 - -0.6 213,855 - +0.7 213,855 - -0.2 213,855 - +0.6
Or see this region's nucleotide sequence