Strain Fitness in Methylophilus sp. DMC18 around GFF206

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF205 and GFF206 are separated by 20 nucleotidesGFF206 and GFF207 are separated by 34 nucleotides GFF205 - Nitrite reductase [NAD(P)H], at 208,181 to 210,607 GFF205 GFF206 - Siroheme synthase, at 210,628 to 211,410 GFF206 GFF207 - hypothetical protein, at 211,445 to 212,896 GFF207 Position (kb) 210 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1at 209.673 kb on + strand, within GFF205at 209.673 kb on + strand, within GFF205at 209.673 kb on + strand, within GFF205at 209.674 kb on - strand, within GFF205at 209.674 kb on - strand, within GFF205at 209.674 kb on - strand, within GFF205at 209.674 kb on - strand, within GFF205at 209.674 kb on - strand, within GFF205at 209.675 kb on + strand, within GFF205at 209.675 kb on + strand, within GFF205at 209.729 kb on + strand, within GFF205at 209.787 kb on + strand, within GFF205at 209.802 kb on + strand, within GFF205at 209.802 kb on + strand, within GFF205at 209.802 kb on + strand, within GFF205at 209.803 kb on - strand, within GFF205at 209.803 kb on - strand, within GFF205at 209.803 kb on - strand, within GFF205at 209.803 kb on - strand, within GFF205at 209.844 kb on + strand, within GFF205at 209.845 kb on - strand, within GFF205at 209.845 kb on - strand, within GFF205at 209.871 kb on + strand, within GFF205at 209.990 kb on + strand, within GFF205at 210.304 kb on - strand, within GFF205at 210.354 kb on - strand, within GFF205at 210.354 kb on - strand, within GFF205at 210.354 kb on - strand, within GFF205at 210.354 kb on - strand, within GFF205at 210.376 kb on + strandat 210.377 kb on - strandat 210.386 kb on - strandat 210.386 kb on - strandat 210.386 kb on - strandat 210.402 kb on + strandat 210.402 kb on + strandat 210.402 kb on + strandat 210.402 kb on + strandat 210.403 kb on - strandat 210.403 kb on - strandat 210.403 kb on - strandat 210.480 kb on + strandat 210.480 kb on + strandat 210.480 kb on + strandat 210.480 kb on + strandat 210.480 kb on + strandat 210.481 kb on - strandat 210.481 kb on - strandat 210.481 kb on - strandat 210.511 kb on + strandat 210.511 kb on + strandat 210.512 kb on - strandat 210.519 kb on + strandat 210.520 kb on - strandat 210.520 kb on - strandat 210.520 kb on - strandat 210.520 kb on - strandat 210.520 kb on - strandat 210.520 kb on - strandat 210.603 kb on - strandat 210.603 kb on - strandat 210.629 kb on + strandat 210.730 kb on - strand, within GFF206at 210.730 kb on - strand, within GFF206at 210.744 kb on + strand, within GFF206at 210.767 kb on + strand, within GFF206at 210.834 kb on + strand, within GFF206at 210.834 kb on + strand, within GFF206at 211.005 kb on - strand, within GFF206at 211.005 kb on - strand, within GFF206at 211.025 kb on - strand, within GFF206at 211.072 kb on - strand, within GFF206at 211.221 kb on + strand, within GFF206at 211.222 kb on - strand, within GFF206at 211.222 kb on - strand, within GFF206at 211.222 kb on - strand, within GFF206at 211.388 kb on - strandat 211.392 kb on - strandat 211.447 kb on - strandat 211.453 kb on + strandat 211.453 kb on + strandat 211.454 kb on - strandat 211.454 kb on - strandat 211.454 kb on - strandat 211.454 kb on - strandat 211.455 kb on + strandat 211.455 kb on + strandat 211.455 kb on + strandat 211.455 kb on + strandat 211.456 kb on - strandat 211.456 kb on - strandat 211.456 kb on - strandat 211.456 kb on - strandat 211.456 kb on - strandat 211.456 kb on - strandat 211.456 kb on - strandat 211.542 kb on + strandat 211.543 kb on - strandat 211.543 kb on - strandat 211.561 kb on - strandat 211.561 kb on - strandat 211.561 kb on - strandat 211.672 kb on + strand, within GFF207at 211.674 kb on + strand, within GFF207at 211.674 kb on + strand, within GFF207at 211.674 kb on + strand, within GFF207at 211.674 kb on + strand, within GFF207at 211.675 kb on - strand, within GFF207at 211.704 kb on + strand, within GFF207at 211.845 kb on + strand, within GFF207at 211.845 kb on + strand, within GFF207at 211.845 kb on + strand, within GFF207at 211.845 kb on + strand, within GFF207at 211.846 kb on - strand, within GFF207at 211.850 kb on - strand, within GFF207at 211.850 kb on - strand, within GFF207at 211.851 kb on - strand, within GFF207at 211.868 kb on + strand, within GFF207at 211.868 kb on + strand, within GFF207at 211.869 kb on - strand, within GFF207at 211.881 kb on - strand, within GFF207at 211.881 kb on - strand, within GFF207at 211.926 kb on + strand, within GFF207at 211.926 kb on + strand, within GFF207at 211.926 kb on + strand, within GFF207at 211.927 kb on - strand, within GFF207at 211.927 kb on - strand, within GFF207at 211.929 kb on + strand, within GFF207at 211.929 kb on + strand, within GFF207at 211.963 kb on - strand, within GFF207at 211.963 kb on - strand, within GFF207at 212.005 kb on - strand, within GFF207at 212.005 kb on - strand, within GFF207at 212.057 kb on - strand, within GFF207at 212.125 kb on + strand, within GFF207at 212.303 kb on - strand, within GFF207at 212.303 kb on - strand, within GFF207at 212.371 kb on + strand, within GFF207

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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209,673 + GFF205 0.61 +0.7
209,673 + GFF205 0.61 +0.7
209,673 + GFF205 0.61 -1.6
209,674 - GFF205 0.62 -1.0
209,674 - GFF205 0.62 +0.0
209,674 - GFF205 0.62 +0.4
209,674 - GFF205 0.62 +0.0
209,674 - GFF205 0.62 -1.0
209,675 + GFF205 0.62 -1.3
209,675 + GFF205 0.62 -1.2
209,729 + GFF205 0.64 -1.2
209,787 + GFF205 0.66 +0.3
209,802 + GFF205 0.67 -1.0
209,802 + GFF205 0.67 -0.3
209,802 + GFF205 0.67 +1.0
209,803 - GFF205 0.67 -1.1
209,803 - GFF205 0.67 -0.3
209,803 - GFF205 0.67 -1.8
209,803 - GFF205 0.67 -3.0
209,844 + GFF205 0.69 -0.2
209,845 - GFF205 0.69 -1.0
209,845 - GFF205 0.69 -0.5
209,871 + GFF205 0.70 -1.3
209,990 + GFF205 0.75 +0.0
210,304 - GFF205 0.87 +0.7
210,354 - GFF205 0.90 -0.6
210,354 - GFF205 0.90 -2.3
210,354 - GFF205 0.90 -1.3
210,354 - GFF205 0.90 -0.6
210,376 + -1.3
210,377 - -1.7
210,386 - -0.6
210,386 - +0.0
210,386 - +1.0
210,402 + -1.8
210,402 + -0.7
210,402 + -1.0
210,402 + -0.3
210,403 - +0.2
210,403 - -0.3
210,403 - -0.2
210,480 + -0.6
210,480 + -0.2
210,480 + -0.5
210,480 + -2.1
210,480 + -2.7
210,481 - -2.0
210,481 - -1.0
210,481 - -1.0
210,511 + -0.5
210,511 + -1.2
210,512 - -0.6
210,519 + +0.3
210,520 - -1.3
210,520 - -0.3
210,520 - -0.3
210,520 - -1.2
210,520 - -0.6
210,520 - -1.6
210,603 - -0.6
210,603 - -2.5
210,629 + -2.0
210,730 - GFF206 0.13 -1.0
210,730 - GFF206 0.13 -0.9
210,744 + GFF206 0.15 +0.0
210,767 + GFF206 0.18 -0.6
210,834 + GFF206 0.26 -1.6
210,834 + GFF206 0.26 -2.0
211,005 - GFF206 0.48 -1.2
211,005 - GFF206 0.48 -1.0
211,025 - GFF206 0.51 +0.3
211,072 - GFF206 0.57 -3.4
211,221 + GFF206 0.76 -0.9
211,222 - GFF206 0.76 +0.1
211,222 - GFF206 0.76 -1.5
211,222 - GFF206 0.76 +0.6
211,388 - -1.0
211,392 - -0.6
211,447 - +0.2
211,453 + -2.0
211,453 + +0.0
211,454 - -1.6
211,454 - -0.5
211,454 - +0.3
211,454 - -2.2
211,455 + -1.3
211,455 + -0.2
211,455 + -2.7
211,455 + -2.7
211,456 - -1.0
211,456 - +0.4
211,456 - -0.6
211,456 - -0.1
211,456 - -1.0
211,456 - -0.8
211,456 - -0.6
211,542 + -1.0
211,543 - -2.2
211,543 - -0.6
211,561 - -0.4
211,561 - -0.9
211,561 - -0.1
211,672 + GFF207 0.16 -0.1
211,674 + GFF207 0.16 +0.0
211,674 + GFF207 0.16 -1.1
211,674 + GFF207 0.16 -1.1
211,674 + GFF207 0.16 -0.6
211,675 - GFF207 0.16 -1.0
211,704 + GFF207 0.18 -2.4
211,845 + GFF207 0.28 +0.4
211,845 + GFF207 0.28 -1.8
211,845 + GFF207 0.28 +0.3
211,845 + GFF207 0.28 -3.5
211,846 - GFF207 0.28 -1.3
211,850 - GFF207 0.28 -1.3
211,850 - GFF207 0.28 -0.6
211,851 - GFF207 0.28 +0.0
211,868 + GFF207 0.29 +0.3
211,868 + GFF207 0.29 -1.3
211,869 - GFF207 0.29 -0.7
211,881 - GFF207 0.30 -2.1
211,881 - GFF207 0.30 -0.5
211,926 + GFF207 0.33 -2.5
211,926 + GFF207 0.33 -1.0
211,926 + GFF207 0.33 -1.0
211,927 - GFF207 0.33 -1.3
211,927 - GFF207 0.33 +0.0
211,929 + GFF207 0.33 -0.8
211,929 + GFF207 0.33 -0.8
211,963 - GFF207 0.36 -1.2
211,963 - GFF207 0.36 -0.4
212,005 - GFF207 0.39 +0.4
212,005 - GFF207 0.39 -1.0
212,057 - GFF207 0.42 -1.8
212,125 + GFF207 0.47 -0.8
212,303 - GFF207 0.59 -1.3
212,303 - GFF207 0.59 -1.6
212,371 + GFF207 0.64 -1.6

Or see this region's nucleotide sequence