Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2021 and GFF2022 are separated by 162 nucleotides GFF2022 and GFF2023 are separated by 109 nucleotides
GFF2021 - 3-hydroxylaminophenol mutase, at 59,385 to 60,794
GFF2021
GFF2022 - hypothetical protein, at 60,957 to 61,412
GFF2022
GFF2023 - Sensory histidine kinase/phosphatase NtrB, at 61,522 to 62,625
GFF2023
Position (kb) 60
61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 60.811 kb on + strand at 60.844 kb on + strand at 60.891 kb on - strand at 60.905 kb on - strand at 60.915 kb on - strand at 60.915 kb on - strand at 60.915 kb on - strand at 60.980 kb on + strand at 60.980 kb on + strand at 60.980 kb on + strand at 60.980 kb on + strand at 60.981 kb on - strand at 60.981 kb on - strand at 60.984 kb on + strand at 60.984 kb on + strand at 60.984 kb on + strand at 60.985 kb on - strand at 60.990 kb on + strand at 60.990 kb on + strand at 60.990 kb on + strand at 60.990 kb on + strand at 60.990 kb on + strand at 60.990 kb on + strand at 60.991 kb on - strand at 60.992 kb on + strand at 60.993 kb on - strand at 61.001 kb on + strand at 61.017 kb on + strand, within GFF2022 at 61.017 kb on + strand, within GFF2022 at 61.017 kb on + strand, within GFF2022 at 61.017 kb on + strand, within GFF2022 at 61.018 kb on - strand, within GFF2022 at 61.018 kb on - strand, within GFF2022 at 61.018 kb on - strand, within GFF2022 at 61.061 kb on + strand, within GFF2022 at 61.065 kb on - strand, within GFF2022 at 61.065 kb on - strand, within GFF2022 at 61.198 kb on + strand, within GFF2022 at 61.201 kb on + strand, within GFF2022 at 61.252 kb on + strand, within GFF2022 at 61.253 kb on - strand, within GFF2022 at 61.254 kb on + strand, within GFF2022 at 61.254 kb on + strand, within GFF2022 at 61.255 kb on - strand, within GFF2022 at 61.255 kb on - strand, within GFF2022 at 61.255 kb on - strand, within GFF2022 at 61.255 kb on - strand, within GFF2022 at 61.284 kb on + strand, within GFF2022 at 61.285 kb on - strand, within GFF2022 at 61.311 kb on - strand, within GFF2022 at 61.327 kb on - strand, within GFF2022 at 61.377 kb on - strand at 61.390 kb on + strand at 61.390 kb on + strand at 61.390 kb on + strand at 61.410 kb on + strand at 61.526 kb on + strand at 61.526 kb on + strand at 61.563 kb on + strand at 61.563 kb on + strand at 61.563 kb on + strand at 61.563 kb on + strand at 61.564 kb on - strand at 61.564 kb on - strand at 61.599 kb on - strand at 61.599 kb on - strand at 61.599 kb on - strand at 61.609 kb on + strand at 61.609 kb on + strand at 61.785 kb on + strand, within GFF2023 at 61.785 kb on + strand, within GFF2023 at 61.785 kb on + strand, within GFF2023 at 61.816 kb on - strand, within GFF2023 at 62.033 kb on + strand, within GFF2023 at 62.034 kb on - strand, within GFF2023 at 62.043 kb on + strand, within GFF2023 at 62.044 kb on - strand, within GFF2023 at 62.075 kb on + strand, within GFF2023 at 62.075 kb on + strand, within GFF2023 at 62.076 kb on - strand, within GFF2023 at 62.076 kb on - strand, within GFF2023 at 62.076 kb on - strand, within GFF2023 at 62.076 kb on - strand, within GFF2023 at 62.076 kb on - strand, within GFF2023 at 62.079 kb on + strand, within GFF2023 at 62.079 kb on + strand, within GFF2023 at 62.080 kb on - strand, within GFF2023 at 62.080 kb on - strand, within GFF2023 at 62.080 kb on - strand, within GFF2023 at 62.080 kb on - strand, within GFF2023 at 62.122 kb on + strand, within GFF2023 at 62.218 kb on - strand, within GFF2023 at 62.283 kb on + strand, within GFF2023 at 62.328 kb on + strand, within GFF2023 at 62.329 kb on - strand, within GFF2023 at 62.329 kb on - strand, within GFF2023 at 62.361 kb on + strand, within GFF2023 at 62.362 kb on - strand, within GFF2023 at 62.366 kb on + strand, within GFF2023 at 62.400 kb on - strand, within GFF2023 at 62.407 kb on - strand, within GFF2023 at 62.407 kb on - strand, within GFF2023
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 60,811 + -1.0 60,844 + +0.7 60,891 - -0.4 60,905 - +0.1 60,915 - -1.4 60,915 - -0.5 60,915 - -1.9 60,980 + -0.5 60,980 + -0.1 60,980 + -2.1 60,980 + -0.1 60,981 - -0.1 60,981 - -0.9 60,984 + -0.1 60,984 + -1.1 60,984 + -1.7 60,985 - -1.9 60,990 + -0.5 60,990 + -0.6 60,990 + -1.1 60,990 + -0.9 60,990 + -1.4 60,990 + -0.9 60,991 - -0.9 60,992 + -1.4 60,993 - -2.4 61,001 + -1.4 61,017 + GFF2022 0.13 -1.1 61,017 + GFF2022 0.13 -0.4 61,017 + GFF2022 0.13 -0.5 61,017 + GFF2022 0.13 -1.3 61,018 - GFF2022 0.13 -0.1 61,018 - GFF2022 0.13 -1.4 61,018 - GFF2022 0.13 -1.2 61,061 + GFF2022 0.23 -0.1 61,065 - GFF2022 0.24 -1.1 61,065 - GFF2022 0.24 -0.3 61,198 + GFF2022 0.53 -1.9 61,201 + GFF2022 0.54 -0.4 61,252 + GFF2022 0.65 -1.9 61,253 - GFF2022 0.65 +0.4 61,254 + GFF2022 0.65 +0.1 61,254 + GFF2022 0.65 +0.0 61,255 - GFF2022 0.65 -1.4 61,255 - GFF2022 0.65 -1.1 61,255 - GFF2022 0.65 -0.6 61,255 - GFF2022 0.65 -0.9 61,284 + GFF2022 0.72 -1.0 61,285 - GFF2022 0.72 -0.1 61,311 - GFF2022 0.78 -0.6 61,327 - GFF2022 0.81 -1.4 61,377 - -1.1 61,390 + +0.7 61,390 + -0.9 61,390 + +0.2 61,410 + -0.3 61,526 + -1.4 61,526 + -2.1 61,563 + -2.6 61,563 + -1.1 61,563 + -1.1 61,563 + -1.9 61,564 - -1.1 61,564 - -1.6 61,599 - -1.1 61,599 - -1.1 61,599 - -1.4 61,609 + -1.4 61,609 + -1.1 61,785 + GFF2023 0.24 -2.9 61,785 + GFF2023 0.24 -1.4 61,785 + GFF2023 0.24 -1.1 61,816 - GFF2023 0.27 -2.1 62,033 + GFF2023 0.46 -2.6 62,034 - GFF2023 0.46 -2.4 62,043 + GFF2023 0.47 -3.3 62,044 - GFF2023 0.47 -2.2 62,075 + GFF2023 0.50 -2.5 62,075 + GFF2023 0.50 -1.4 62,076 - GFF2023 0.50 -1.6 62,076 - GFF2023 0.50 -1.9 62,076 - GFF2023 0.50 -1.1 62,076 - GFF2023 0.50 -2.2 62,076 - GFF2023 0.50 -1.1 62,079 + GFF2023 0.50 -2.2 62,079 + GFF2023 0.50 -2.1 62,080 - GFF2023 0.51 -1.1 62,080 - GFF2023 0.51 -1.1 62,080 - GFF2023 0.51 -1.4 62,080 - GFF2023 0.51 -1.5 62,122 + GFF2023 0.54 -2.6 62,218 - GFF2023 0.63 -2.1 62,283 + GFF2023 0.69 -2.4 62,328 + GFF2023 0.73 -1.1 62,329 - GFF2023 0.73 -1.1 62,329 - GFF2023 0.73 -1.6 62,361 + GFF2023 0.76 -1.6 62,362 - GFF2023 0.76 -1.1 62,366 + GFF2023 0.76 -2.1 62,400 - GFF2023 0.80 -1.9 62,407 - GFF2023 0.80 -1.6 62,407 - GFF2023 0.80 -1.4
Or see this region's nucleotide sequence