Strain Fitness in Methylophilus sp. DMC18 around GFF202

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF201 and GFF202 are separated by 27 nucleotidesGFF202 and GFF203 are separated by 38 nucleotides GFF201 - Periplasmic nitrate reductase, at 202,014 to 204,782 GFF201 GFF202 - Assimilatory nitrite reductase [NAD(P)H] small subunit, at 204,810 to 205,121 GFF202 GFF203 - Serine/threonine-protein kinase PknD, at 205,160 to 206,848 GFF203 Position (kb) 204 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1at 203.836 kb on + strand, within GFF201at 203.836 kb on + strand, within GFF201at 203.836 kb on + strand, within GFF201at 203.836 kb on + strand, within GFF201at 203.836 kb on + strand, within GFF201at 203.837 kb on - strand, within GFF201at 203.837 kb on - strand, within GFF201at 203.837 kb on - strand, within GFF201at 203.837 kb on - strand, within GFF201at 203.837 kb on - strand, within GFF201at 203.973 kb on - strand, within GFF201at 203.984 kb on + strand, within GFF201at 203.986 kb on + strand, within GFF201at 203.987 kb on - strand, within GFF201at 203.987 kb on - strand, within GFF201at 203.987 kb on - strand, within GFF201at 204.063 kb on + strand, within GFF201at 204.114 kb on + strand, within GFF201at 204.224 kb on + strand, within GFF201at 204.242 kb on - strand, within GFF201at 204.242 kb on - strand, within GFF201at 204.242 kb on - strand, within GFF201at 204.242 kb on - strand, within GFF201at 204.362 kb on + strand, within GFF201at 204.362 kb on + strand, within GFF201at 204.366 kb on + strand, within GFF201at 204.366 kb on + strand, within GFF201at 204.366 kb on + strand, within GFF201at 204.366 kb on + strand, within GFF201at 204.366 kb on + strand, within GFF201at 204.367 kb on - strand, within GFF201at 204.367 kb on - strand, within GFF201at 204.367 kb on - strand, within GFF201at 204.367 kb on - strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.371 kb on - strand, within GFF201at 204.371 kb on - strand, within GFF201at 204.371 kb on - strand, within GFF201at 204.371 kb on - strand, within GFF201at 204.371 kb on - strand, within GFF201at 204.373 kb on + strand, within GFF201at 204.374 kb on - strand, within GFF201at 204.374 kb on - strand, within GFF201at 204.374 kb on - strand, within GFF201at 204.374 kb on - strand, within GFF201at 204.401 kb on + strand, within GFF201at 204.403 kb on + strand, within GFF201at 204.404 kb on - strand, within GFF201at 204.404 kb on - strand, within GFF201at 204.437 kb on + strand, within GFF201at 204.476 kb on + strand, within GFF201at 204.653 kb on + strandat 204.682 kb on + strandat 204.683 kb on - strandat 204.782 kb on + strandat 204.782 kb on + strandat 204.811 kb on + strandat 204.819 kb on + strandat 204.819 kb on + strandat 204.820 kb on - strandat 204.829 kb on + strandat 204.829 kb on + strandat 204.830 kb on - strandat 204.830 kb on - strandat 204.830 kb on - strandat 204.859 kb on + strand, within GFF202at 204.923 kb on + strand, within GFF202at 204.923 kb on + strand, within GFF202at 204.923 kb on + strand, within GFF202at 204.923 kb on + strand, within GFF202at 204.924 kb on - strand, within GFF202at 204.924 kb on - strand, within GFF202at 204.924 kb on - strand, within GFF202at 204.924 kb on - strand, within GFF202at 204.924 kb on - strand, within GFF202at 204.924 kb on - strand, within GFF202at 204.952 kb on + strand, within GFF202at 205.162 kb on - strandat 205.179 kb on + strandat 205.211 kb on - strandat 205.235 kb on + strandat 205.261 kb on + strandat 205.366 kb on + strand, within GFF203at 205.366 kb on + strand, within GFF203at 205.467 kb on + strand, within GFF203at 205.467 kb on + strand, within GFF203at 205.468 kb on - strand, within GFF203at 205.468 kb on - strand, within GFF203at 205.468 kb on - strand, within GFF203at 205.471 kb on + strand, within GFF203at 205.488 kb on + strand, within GFF203at 205.488 kb on + strand, within GFF203at 205.488 kb on + strand, within GFF203at 205.488 kb on + strand, within GFF203at 205.489 kb on - strand, within GFF203at 205.509 kb on + strand, within GFF203at 205.514 kb on - strand, within GFF203at 205.651 kb on + strand, within GFF203at 205.669 kb on + strand, within GFF203at 205.700 kb on - strand, within GFF203at 205.830 kb on + strand, within GFF203at 205.830 kb on + strand, within GFF203at 205.833 kb on + strand, within GFF203at 205.833 kb on + strand, within GFF203at 205.942 kb on + strand, within GFF203at 205.983 kb on - strand, within GFF203at 205.983 kb on - strand, within GFF203at 206.010 kb on + strand, within GFF203at 206.010 kb on + strand, within GFF203at 206.011 kb on - strand, within GFF203at 206.011 kb on - strand, within GFF203at 206.012 kb on + strand, within GFF203at 206.012 kb on + strand, within GFF203at 206.013 kb on + strand, within GFF203at 206.013 kb on - strand, within GFF203at 206.013 kb on - strand, within GFF203at 206.036 kb on + strand, within GFF203at 206.036 kb on + strand, within GFF203at 206.036 kb on + strand, within GFF203at 206.037 kb on - strand, within GFF203at 206.037 kb on - strand, within GFF203

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
203,836 + GFF201 0.66 -1.0
203,836 + GFF201 0.66 -0.9
203,836 + GFF201 0.66 -1.0
203,836 + GFF201 0.66 -0.8
203,836 + GFF201 0.66 -1.4
203,837 - GFF201 0.66 +0.4
203,837 - GFF201 0.66 +0.0
203,837 - GFF201 0.66 -1.1
203,837 - GFF201 0.66 +1.0
203,837 - GFF201 0.66 -1.8
203,973 - GFF201 0.71 -1.5
203,984 + GFF201 0.71 -1.7
203,986 + GFF201 0.71 -0.3
203,987 - GFF201 0.71 -0.3
203,987 - GFF201 0.71 -2.7
203,987 - GFF201 0.71 -1.0
204,063 + GFF201 0.74 -1.3
204,114 + GFF201 0.76 -2.2
204,224 + GFF201 0.80 +0.3
204,242 - GFF201 0.80 -1.6
204,242 - GFF201 0.80 +0.5
204,242 - GFF201 0.80 -0.3
204,242 - GFF201 0.80 -2.5
204,362 + GFF201 0.85 -0.2
204,362 + GFF201 0.85 -0.4
204,366 + GFF201 0.85 -0.3
204,366 + GFF201 0.85 -0.7
204,366 + GFF201 0.85 -1.0
204,366 + GFF201 0.85 -1.0
204,366 + GFF201 0.85 -0.8
204,367 - GFF201 0.85 -0.1
204,367 - GFF201 0.85 +0.0
204,367 - GFF201 0.85 -2.0
204,367 - GFF201 0.85 -1.0
204,370 + GFF201 0.85 -2.5
204,370 + GFF201 0.85 -0.8
204,370 + GFF201 0.85 -1.5
204,370 + GFF201 0.85 -1.0
204,370 + GFF201 0.85 -1.0
204,370 + GFF201 0.85 -1.1
204,370 + GFF201 0.85 -0.9
204,370 + GFF201 0.85 -0.8
204,371 - GFF201 0.85 +0.7
204,371 - GFF201 0.85 -1.9
204,371 - GFF201 0.85 +0.0
204,371 - GFF201 0.85 -0.8
204,371 - GFF201 0.85 -1.0
204,373 + GFF201 0.85 -0.3
204,374 - GFF201 0.85 -1.1
204,374 - GFF201 0.85 -1.2
204,374 - GFF201 0.85 -0.5
204,374 - GFF201 0.85 -0.5
204,401 + GFF201 0.86 -1.6
204,403 + GFF201 0.86 -1.3
204,404 - GFF201 0.86 -0.9
204,404 - GFF201 0.86 -1.0
204,437 + GFF201 0.88 -1.5
204,476 + GFF201 0.89 -2.6
204,653 + -1.2
204,682 + -2.6
204,683 - -1.6
204,782 + -0.3
204,782 + -0.7
204,811 + -1.3
204,819 + -1.1
204,819 + -0.2
204,820 - -1.3
204,829 + -0.3
204,829 + -1.0
204,830 - +0.4
204,830 - -0.6
204,830 - -0.5
204,859 + GFF202 0.16 -0.8
204,923 + GFF202 0.36 -1.8
204,923 + GFF202 0.36 -1.2
204,923 + GFF202 0.36 -1.5
204,923 + GFF202 0.36 -1.3
204,924 - GFF202 0.37 -1.0
204,924 - GFF202 0.37 -0.8
204,924 - GFF202 0.37 -0.7
204,924 - GFF202 0.37 -1.6
204,924 - GFF202 0.37 -0.2
204,924 - GFF202 0.37 -1.1
204,952 + GFF202 0.46 -0.3
205,162 - -0.2
205,179 + -1.1
205,211 - -0.2
205,235 + +0.0
205,261 + -0.6
205,366 + GFF203 0.12 +1.0
205,366 + GFF203 0.12 +0.0
205,467 + GFF203 0.18 -0.6
205,467 + GFF203 0.18 -0.7
205,468 - GFF203 0.18 -0.3
205,468 - GFF203 0.18 -1.1
205,468 - GFF203 0.18 -1.0
205,471 + GFF203 0.18 -0.4
205,488 + GFF203 0.19 +0.3
205,488 + GFF203 0.19 -0.4
205,488 + GFF203 0.19 -1.3
205,488 + GFF203 0.19 +0.0
205,489 - GFF203 0.19 -0.8
205,509 + GFF203 0.21 -2.3
205,514 - GFF203 0.21 +0.0
205,651 + GFF203 0.29 -2.3
205,669 + GFF203 0.30 -1.0
205,700 - GFF203 0.32 +0.3
205,830 + GFF203 0.40 +0.7
205,830 + GFF203 0.40 -1.6
205,833 + GFF203 0.40 -1.8
205,833 + GFF203 0.40 +0.4
205,942 + GFF203 0.46 -1.3
205,983 - GFF203 0.49 -0.4
205,983 - GFF203 0.49 +0.2
206,010 + GFF203 0.50 +0.0
206,010 + GFF203 0.50 -0.6
206,011 - GFF203 0.50 -1.6
206,011 - GFF203 0.50 +0.0
206,012 + GFF203 0.50 +0.0
206,012 + GFF203 0.50 -2.9
206,013 + GFF203 0.51 -1.0
206,013 - GFF203 0.51 +0.7
206,013 - GFF203 0.51 -0.1
206,036 + GFF203 0.52 +0.3
206,036 + GFF203 0.52 -1.8
206,036 + GFF203 0.52 +0.0
206,037 - GFF203 0.52 -0.5
206,037 - GFF203 0.52 -1.8

Or see this region's nucleotide sequence