Strain Fitness in Methylophilus sp. DMC18 around GFF201

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF200 and GFF201 are separated by 483 nucleotidesGFF201 and GFF202 are separated by 27 nucleotidesGFF202 and GFF203 are separated by 38 nucleotides GFF200 - Nitrite reductase [NAD(P)H], at 198,954 to 201,530 GFF200 GFF201 - Periplasmic nitrate reductase, at 202,014 to 204,782 GFF201 GFF202 - Assimilatory nitrite reductase [NAD(P)H] small subunit, at 204,810 to 205,121 GFF202 GFF203 - Serine/threonine-protein kinase PknD, at 205,160 to 206,848 GFF203 Position (kb) 202 203 204 205Strain fitness (log2 ratio) -3 -2 -1 0 1at 201.054 kb on + strand, within GFF200at 201.055 kb on - strand, within GFF200at 201.389 kb on - strandat 201.389 kb on - strandat 201.411 kb on + strandat 201.478 kb on + strandat 201.478 kb on + strandat 201.478 kb on + strandat 201.478 kb on + strandat 201.479 kb on - strandat 201.479 kb on - strandat 201.541 kb on + strandat 201.638 kb on - strandat 201.642 kb on + strandat 201.642 kb on + strandat 201.643 kb on - strandat 201.680 kb on + strandat 201.680 kb on + strandat 201.681 kb on - strandat 201.681 kb on - strandat 201.681 kb on - strandat 201.747 kb on + strandat 201.747 kb on + strandat 201.748 kb on - strandat 201.828 kb on - strandat 201.851 kb on + strandat 201.870 kb on - strandat 201.870 kb on - strandat 201.870 kb on - strandat 201.870 kb on - strandat 201.870 kb on - strandat 201.870 kb on - strandat 202.176 kb on - strandat 202.176 kb on - strandat 202.176 kb on - strandat 202.504 kb on + strand, within GFF201at 202.709 kb on + strand, within GFF201at 202.737 kb on - strand, within GFF201at 202.773 kb on + strand, within GFF201at 202.774 kb on - strand, within GFF201at 202.774 kb on - strand, within GFF201at 202.811 kb on + strand, within GFF201at 202.891 kb on + strand, within GFF201at 202.892 kb on - strand, within GFF201at 202.892 kb on - strand, within GFF201at 202.892 kb on - strand, within GFF201at 203.002 kb on + strand, within GFF201at 203.059 kb on + strand, within GFF201at 203.059 kb on + strand, within GFF201at 203.060 kb on - strand, within GFF201at 203.135 kb on - strand, within GFF201at 203.151 kb on - strand, within GFF201at 203.216 kb on + strand, within GFF201at 203.217 kb on - strand, within GFF201at 203.394 kb on + strand, within GFF201at 203.405 kb on - strand, within GFF201at 203.549 kb on + strand, within GFF201at 203.836 kb on + strand, within GFF201at 203.836 kb on + strand, within GFF201at 203.836 kb on + strand, within GFF201at 203.836 kb on + strand, within GFF201at 203.836 kb on + strand, within GFF201at 203.837 kb on - strand, within GFF201at 203.837 kb on - strand, within GFF201at 203.837 kb on - strand, within GFF201at 203.837 kb on - strand, within GFF201at 203.837 kb on - strand, within GFF201at 203.973 kb on - strand, within GFF201at 203.984 kb on + strand, within GFF201at 203.986 kb on + strand, within GFF201at 203.987 kb on - strand, within GFF201at 203.987 kb on - strand, within GFF201at 203.987 kb on - strand, within GFF201at 204.063 kb on + strand, within GFF201at 204.114 kb on + strand, within GFF201at 204.224 kb on + strand, within GFF201at 204.242 kb on - strand, within GFF201at 204.242 kb on - strand, within GFF201at 204.242 kb on - strand, within GFF201at 204.242 kb on - strand, within GFF201at 204.362 kb on + strand, within GFF201at 204.362 kb on + strand, within GFF201at 204.366 kb on + strand, within GFF201at 204.366 kb on + strand, within GFF201at 204.366 kb on + strand, within GFF201at 204.366 kb on + strand, within GFF201at 204.366 kb on + strand, within GFF201at 204.367 kb on - strand, within GFF201at 204.367 kb on - strand, within GFF201at 204.367 kb on - strand, within GFF201at 204.367 kb on - strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.370 kb on + strand, within GFF201at 204.371 kb on - strand, within GFF201at 204.371 kb on - strand, within GFF201at 204.371 kb on - strand, within GFF201at 204.371 kb on - strand, within GFF201at 204.371 kb on - strand, within GFF201at 204.373 kb on + strand, within GFF201at 204.374 kb on - strand, within GFF201at 204.374 kb on - strand, within GFF201at 204.374 kb on - strand, within GFF201at 204.374 kb on - strand, within GFF201at 204.401 kb on + strand, within GFF201at 204.403 kb on + strand, within GFF201at 204.404 kb on - strand, within GFF201at 204.404 kb on - strand, within GFF201at 204.437 kb on + strand, within GFF201at 204.476 kb on + strand, within GFF201at 204.653 kb on + strandat 204.682 kb on + strandat 204.683 kb on - strandat 204.782 kb on + strandat 204.782 kb on + strandat 204.811 kb on + strandat 204.819 kb on + strandat 204.819 kb on + strandat 204.820 kb on - strandat 204.829 kb on + strandat 204.829 kb on + strandat 204.830 kb on - strandat 204.830 kb on - strandat 204.830 kb on - strandat 204.859 kb on + strand, within GFF202at 204.923 kb on + strand, within GFF202at 204.923 kb on + strand, within GFF202at 204.923 kb on + strand, within GFF202at 204.923 kb on + strand, within GFF202at 204.924 kb on - strand, within GFF202at 204.924 kb on - strand, within GFF202at 204.924 kb on - strand, within GFF202at 204.924 kb on - strand, within GFF202at 204.924 kb on - strand, within GFF202at 204.924 kb on - strand, within GFF202at 204.952 kb on + strand, within GFF202at 205.162 kb on - strandat 205.179 kb on + strandat 205.211 kb on - strandat 205.235 kb on + strandat 205.261 kb on + strandat 205.366 kb on + strand, within GFF203at 205.366 kb on + strand, within GFF203at 205.467 kb on + strand, within GFF203at 205.467 kb on + strand, within GFF203at 205.468 kb on - strand, within GFF203at 205.468 kb on - strand, within GFF203at 205.468 kb on - strand, within GFF203at 205.471 kb on + strand, within GFF203at 205.488 kb on + strand, within GFF203at 205.488 kb on + strand, within GFF203at 205.488 kb on + strand, within GFF203at 205.488 kb on + strand, within GFF203at 205.489 kb on - strand, within GFF203at 205.509 kb on + strand, within GFF203at 205.514 kb on - strand, within GFF203at 205.651 kb on + strand, within GFF203at 205.669 kb on + strand, within GFF203at 205.700 kb on - strand, within GFF203

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
201,054 + GFF200 0.81 -0.7
201,055 - GFF200 0.82 -0.6
201,389 - -2.0
201,389 - -1.6
201,411 + +0.9
201,478 + -1.3
201,478 + -0.9
201,478 + -1.8
201,478 + -0.6
201,479 - -1.3
201,479 - -1.6
201,541 + +0.3
201,638 - -0.4
201,642 + -1.2
201,642 + +0.0
201,643 - +0.3
201,680 + +0.2
201,680 + -1.8
201,681 - -2.3
201,681 - -1.3
201,681 - -0.2
201,747 + -1.7
201,747 + -0.1
201,748 - +0.3
201,828 - +0.0
201,851 + -0.2
201,870 - +0.0
201,870 - +0.0
201,870 - -0.2
201,870 - -0.8
201,870 - -1.0
201,870 - -1.1
202,176 - -0.2
202,176 - +0.7
202,176 - -0.5
202,504 + GFF201 0.18 -1.3
202,709 + GFF201 0.25 -1.3
202,737 - GFF201 0.26 -0.9
202,773 + GFF201 0.27 -0.3
202,774 - GFF201 0.27 -2.2
202,774 - GFF201 0.27 -0.7
202,811 + GFF201 0.29 -1.1
202,891 + GFF201 0.32 -1.2
202,892 - GFF201 0.32 -2.8
202,892 - GFF201 0.32 -0.7
202,892 - GFF201 0.32 -0.8
203,002 + GFF201 0.36 -1.0
203,059 + GFF201 0.38 -0.8
203,059 + GFF201 0.38 -1.3
203,060 - GFF201 0.38 -0.3
203,135 - GFF201 0.40 -2.3
203,151 - GFF201 0.41 -2.0
203,216 + GFF201 0.43 +0.1
203,217 - GFF201 0.43 -0.3
203,394 + GFF201 0.50 -1.0
203,405 - GFF201 0.50 -1.3
203,549 + GFF201 0.55 +1.6
203,836 + GFF201 0.66 -1.0
203,836 + GFF201 0.66 -0.9
203,836 + GFF201 0.66 -1.0
203,836 + GFF201 0.66 -0.8
203,836 + GFF201 0.66 -1.4
203,837 - GFF201 0.66 +0.4
203,837 - GFF201 0.66 +0.0
203,837 - GFF201 0.66 -1.1
203,837 - GFF201 0.66 +1.0
203,837 - GFF201 0.66 -1.8
203,973 - GFF201 0.71 -1.5
203,984 + GFF201 0.71 -1.7
203,986 + GFF201 0.71 -0.3
203,987 - GFF201 0.71 -0.3
203,987 - GFF201 0.71 -2.7
203,987 - GFF201 0.71 -1.0
204,063 + GFF201 0.74 -1.3
204,114 + GFF201 0.76 -2.2
204,224 + GFF201 0.80 +0.3
204,242 - GFF201 0.80 -1.6
204,242 - GFF201 0.80 +0.5
204,242 - GFF201 0.80 -0.3
204,242 - GFF201 0.80 -2.5
204,362 + GFF201 0.85 -0.2
204,362 + GFF201 0.85 -0.4
204,366 + GFF201 0.85 -0.3
204,366 + GFF201 0.85 -0.7
204,366 + GFF201 0.85 -1.0
204,366 + GFF201 0.85 -1.0
204,366 + GFF201 0.85 -0.8
204,367 - GFF201 0.85 -0.1
204,367 - GFF201 0.85 +0.0
204,367 - GFF201 0.85 -2.0
204,367 - GFF201 0.85 -1.0
204,370 + GFF201 0.85 -2.5
204,370 + GFF201 0.85 -0.8
204,370 + GFF201 0.85 -1.5
204,370 + GFF201 0.85 -1.0
204,370 + GFF201 0.85 -1.0
204,370 + GFF201 0.85 -1.1
204,370 + GFF201 0.85 -0.9
204,370 + GFF201 0.85 -0.8
204,371 - GFF201 0.85 +0.7
204,371 - GFF201 0.85 -1.9
204,371 - GFF201 0.85 +0.0
204,371 - GFF201 0.85 -0.8
204,371 - GFF201 0.85 -1.0
204,373 + GFF201 0.85 -0.3
204,374 - GFF201 0.85 -1.1
204,374 - GFF201 0.85 -1.2
204,374 - GFF201 0.85 -0.5
204,374 - GFF201 0.85 -0.5
204,401 + GFF201 0.86 -1.6
204,403 + GFF201 0.86 -1.3
204,404 - GFF201 0.86 -0.9
204,404 - GFF201 0.86 -1.0
204,437 + GFF201 0.88 -1.5
204,476 + GFF201 0.89 -2.6
204,653 + -1.2
204,682 + -2.6
204,683 - -1.6
204,782 + -0.3
204,782 + -0.7
204,811 + -1.3
204,819 + -1.1
204,819 + -0.2
204,820 - -1.3
204,829 + -0.3
204,829 + -1.0
204,830 - +0.4
204,830 - -0.6
204,830 - -0.5
204,859 + GFF202 0.16 -0.8
204,923 + GFF202 0.36 -1.8
204,923 + GFF202 0.36 -1.2
204,923 + GFF202 0.36 -1.5
204,923 + GFF202 0.36 -1.3
204,924 - GFF202 0.37 -1.0
204,924 - GFF202 0.37 -0.8
204,924 - GFF202 0.37 -0.7
204,924 - GFF202 0.37 -1.6
204,924 - GFF202 0.37 -0.2
204,924 - GFF202 0.37 -1.1
204,952 + GFF202 0.46 -0.3
205,162 - -0.2
205,179 + -1.1
205,211 - -0.2
205,235 + +0.0
205,261 + -0.6
205,366 + GFF203 0.12 +1.0
205,366 + GFF203 0.12 +0.0
205,467 + GFF203 0.18 -0.6
205,467 + GFF203 0.18 -0.7
205,468 - GFF203 0.18 -0.3
205,468 - GFF203 0.18 -1.1
205,468 - GFF203 0.18 -1.0
205,471 + GFF203 0.18 -0.4
205,488 + GFF203 0.19 +0.3
205,488 + GFF203 0.19 -0.4
205,488 + GFF203 0.19 -1.3
205,488 + GFF203 0.19 +0.0
205,489 - GFF203 0.19 -0.8
205,509 + GFF203 0.21 -2.3
205,514 - GFF203 0.21 +0.0
205,651 + GFF203 0.29 -2.3
205,669 + GFF203 0.30 -1.0
205,700 - GFF203 0.32 +0.3

Or see this region's nucleotide sequence