Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF198 and GFF199 are separated by 25 nucleotides GFF199 and GFF200 are separated by 15 nucleotides GFF200 and GFF201 are separated by 483 nucleotides
GFF198 - hypothetical protein, at 197,891 to 198,550
GFF198
GFF199 - Nitrite reductase (NADH) small subunit, at 198,576 to 198,938
GFF199
GFF200 - Nitrite reductase [NAD(P)H], at 198,954 to 201,530
GFF200
GFF201 - Periplasmic nitrate reductase, at 202,014 to 204,782
GFF201
Position (kb) 198
199
200
201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 198.120 kb on + strand, within GFF198 at 198.121 kb on - strand, within GFF198 at 198.208 kb on + strand, within GFF198 at 198.247 kb on + strand, within GFF198 at 198.325 kb on - strand, within GFF198 at 198.325 kb on - strand, within GFF198 at 198.352 kb on + strand, within GFF198 at 198.352 kb on + strand, within GFF198 at 198.352 kb on + strand, within GFF198 at 198.352 kb on + strand, within GFF198 at 198.353 kb on - strand, within GFF198 at 198.353 kb on - strand, within GFF198 at 198.385 kb on + strand, within GFF198 at 198.415 kb on + strand, within GFF198 at 198.592 kb on - strand at 198.592 kb on - strand at 198.667 kb on - strand, within GFF199 at 198.685 kb on + strand, within GFF199 at 198.685 kb on + strand, within GFF199 at 198.686 kb on - strand, within GFF199 at 198.927 kb on + strand at 198.928 kb on - strand at 198.938 kb on + strand at 198.939 kb on - strand at 198.955 kb on + strand at 198.955 kb on + strand at 199.061 kb on + strand at 199.061 kb on + strand at 199.062 kb on - strand at 199.082 kb on + strand at 199.150 kb on + strand at 199.150 kb on + strand at 199.158 kb on + strand at 199.231 kb on + strand, within GFF200 at 199.231 kb on + strand, within GFF200 at 199.232 kb on - strand, within GFF200 at 199.300 kb on + strand, within GFF200 at 199.300 kb on + strand, within GFF200 at 199.300 kb on + strand, within GFF200 at 199.300 kb on + strand, within GFF200 at 199.300 kb on + strand, within GFF200 at 199.301 kb on - strand, within GFF200 at 199.301 kb on - strand, within GFF200 at 199.301 kb on - strand, within GFF200 at 199.301 kb on - strand, within GFF200 at 199.301 kb on - strand, within GFF200 at 199.301 kb on - strand, within GFF200 at 199.320 kb on + strand, within GFF200 at 199.321 kb on - strand, within GFF200 at 199.321 kb on - strand, within GFF200 at 199.405 kb on + strand, within GFF200 at 199.406 kb on - strand, within GFF200 at 199.615 kb on - strand, within GFF200 at 199.615 kb on - strand, within GFF200 at 199.628 kb on - strand, within GFF200 at 199.673 kb on + strand, within GFF200 at 199.673 kb on + strand, within GFF200 at 199.674 kb on - strand, within GFF200 at 199.674 kb on - strand, within GFF200 at 199.681 kb on - strand, within GFF200 at 199.738 kb on + strand, within GFF200 at 199.738 kb on + strand, within GFF200 at 199.738 kb on + strand, within GFF200 at 199.738 kb on + strand, within GFF200 at 199.738 kb on + strand, within GFF200 at 199.739 kb on - strand, within GFF200 at 199.739 kb on - strand, within GFF200 at 199.739 kb on - strand, within GFF200 at 199.747 kb on + strand, within GFF200 at 199.825 kb on + strand, within GFF200 at 199.825 kb on + strand, within GFF200 at 199.858 kb on + strand, within GFF200 at 199.858 kb on + strand, within GFF200 at 199.858 kb on + strand, within GFF200 at 199.859 kb on - strand, within GFF200 at 199.859 kb on - strand, within GFF200 at 199.980 kb on - strand, within GFF200 at 200.019 kb on + strand, within GFF200 at 200.019 kb on + strand, within GFF200 at 200.020 kb on - strand, within GFF200 at 200.030 kb on - strand, within GFF200 at 200.030 kb on - strand, within GFF200 at 200.181 kb on + strand, within GFF200 at 200.182 kb on - strand, within GFF200 at 200.182 kb on - strand, within GFF200 at 200.235 kb on - strand, within GFF200 at 200.381 kb on - strand, within GFF200 at 200.452 kb on + strand, within GFF200 at 200.456 kb on + strand, within GFF200 at 200.457 kb on - strand, within GFF200 at 200.457 kb on - strand, within GFF200 at 200.457 kb on - strand, within GFF200 at 200.476 kb on + strand, within GFF200 at 200.632 kb on + strand, within GFF200 at 200.692 kb on + strand, within GFF200 at 200.692 kb on + strand, within GFF200 at 200.693 kb on - strand, within GFF200 at 200.693 kb on - strand, within GFF200 at 200.697 kb on - strand, within GFF200 at 200.697 kb on - strand, within GFF200 at 200.892 kb on - strand, within GFF200 at 200.913 kb on + strand, within GFF200 at 200.964 kb on + strand, within GFF200 at 201.054 kb on + strand, within GFF200 at 201.055 kb on - strand, within GFF200 at 201.389 kb on - strand at 201.389 kb on - strand at 201.411 kb on + strand at 201.478 kb on + strand at 201.478 kb on + strand at 201.478 kb on + strand at 201.478 kb on + strand at 201.479 kb on - strand at 201.479 kb on - strand at 201.541 kb on + strand at 201.638 kb on - strand at 201.642 kb on + strand at 201.642 kb on + strand at 201.643 kb on - strand at 201.680 kb on + strand at 201.680 kb on + strand at 201.681 kb on - strand at 201.681 kb on - strand at 201.681 kb on - strand at 201.747 kb on + strand at 201.747 kb on + strand at 201.748 kb on - strand at 201.828 kb on - strand at 201.851 kb on + strand at 201.870 kb on - strand at 201.870 kb on - strand at 201.870 kb on - strand at 201.870 kb on - strand at 201.870 kb on - strand at 201.870 kb on - strand at 202.176 kb on - strand at 202.176 kb on - strand at 202.176 kb on - strand at 202.504 kb on + strand, within GFF201
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 198,120 + GFF198 0.35 +2.0 198,121 - GFF198 0.35 +0.0 198,208 + GFF198 0.48 -0.2 198,247 + GFF198 0.54 +1.4 198,325 - GFF198 0.66 -1.2 198,325 - GFF198 0.66 +0.0 198,352 + GFF198 0.70 +0.6 198,352 + GFF198 0.70 -1.0 198,352 + GFF198 0.70 -0.9 198,352 + GFF198 0.70 -0.4 198,353 - GFF198 0.70 -0.2 198,353 - GFF198 0.70 -0.1 198,385 + GFF198 0.75 -1.0 198,415 + GFF198 0.79 -1.3 198,592 - -1.0 198,592 - -1.0 198,667 - GFF199 0.25 -1.6 198,685 + GFF199 0.30 -0.6 198,685 + GFF199 0.30 -2.1 198,686 - GFF199 0.30 -0.6 198,927 + -1.2 198,928 - -1.5 198,938 + +0.0 198,939 - -1.0 198,955 + -1.2 198,955 + +0.4 199,061 + -1.2 199,061 + -1.7 199,062 - -0.3 199,082 + +0.0 199,150 + +0.0 199,150 + -1.0 199,158 + +0.0 199,231 + GFF200 0.11 -1.4 199,231 + GFF200 0.11 +0.0 199,232 - GFF200 0.11 -1.2 199,300 + GFF200 0.13 -1.0 199,300 + GFF200 0.13 -1.3 199,300 + GFF200 0.13 -1.5 199,300 + GFF200 0.13 -1.0 199,300 + GFF200 0.13 -0.6 199,301 - GFF200 0.13 -1.3 199,301 - GFF200 0.13 -2.6 199,301 - GFF200 0.13 +0.0 199,301 - GFF200 0.13 -0.1 199,301 - GFF200 0.13 +0.0 199,301 - GFF200 0.13 -1.0 199,320 + GFF200 0.14 -2.2 199,321 - GFF200 0.14 -0.2 199,321 - GFF200 0.14 -1.8 199,405 + GFF200 0.18 -1.0 199,406 - GFF200 0.18 -1.3 199,615 - GFF200 0.26 -0.5 199,615 - GFF200 0.26 -0.3 199,628 - GFF200 0.26 -1.2 199,673 + GFF200 0.28 +0.6 199,673 + GFF200 0.28 -0.3 199,674 - GFF200 0.28 -0.4 199,674 - GFF200 0.28 -0.6 199,681 - GFF200 0.28 -1.3 199,738 + GFF200 0.30 -0.6 199,738 + GFF200 0.30 +1.0 199,738 + GFF200 0.30 -0.9 199,738 + GFF200 0.30 -0.6 199,738 + GFF200 0.30 +0.0 199,739 - GFF200 0.30 -1.8 199,739 - GFF200 0.30 -0.1 199,739 - GFF200 0.30 -1.5 199,747 + GFF200 0.31 -1.0 199,825 + GFF200 0.34 -1.0 199,825 + GFF200 0.34 -0.8 199,858 + GFF200 0.35 -2.1 199,858 + GFF200 0.35 -1.0 199,858 + GFF200 0.35 +0.0 199,859 - GFF200 0.35 -1.8 199,859 - GFF200 0.35 -1.0 199,980 - GFF200 0.40 -1.6 200,019 + GFF200 0.41 -1.0 200,019 + GFF200 0.41 -2.2 200,020 - GFF200 0.41 +0.0 200,030 - GFF200 0.42 -1.1 200,030 - GFF200 0.42 +0.0 200,181 + GFF200 0.48 -1.6 200,182 - GFF200 0.48 -1.0 200,182 - GFF200 0.48 -1.0 200,235 - GFF200 0.50 -1.7 200,381 - GFF200 0.55 +1.0 200,452 + GFF200 0.58 -1.0 200,456 + GFF200 0.58 -1.3 200,457 - GFF200 0.58 +1.0 200,457 - GFF200 0.58 -0.2 200,457 - GFF200 0.58 -2.9 200,476 + GFF200 0.59 -1.3 200,632 + GFF200 0.65 +0.3 200,692 + GFF200 0.67 -3.5 200,692 + GFF200 0.67 +0.7 200,693 - GFF200 0.67 -1.7 200,693 - GFF200 0.67 -0.4 200,697 - GFF200 0.68 -1.6 200,697 - GFF200 0.68 +0.6 200,892 - GFF200 0.75 +0.4 200,913 + GFF200 0.76 -1.0 200,964 + GFF200 0.78 -1.7 201,054 + GFF200 0.81 -0.7 201,055 - GFF200 0.82 -0.6 201,389 - -2.0 201,389 - -1.6 201,411 + +0.9 201,478 + -1.3 201,478 + -0.9 201,478 + -1.8 201,478 + -0.6 201,479 - -1.3 201,479 - -1.6 201,541 + +0.3 201,638 - -0.4 201,642 + -1.2 201,642 + +0.0 201,643 - +0.3 201,680 + +0.2 201,680 + -1.8 201,681 - -2.3 201,681 - -1.3 201,681 - -0.2 201,747 + -1.7 201,747 + -0.1 201,748 - +0.3 201,828 - +0.0 201,851 + -0.2 201,870 - +0.0 201,870 - +0.0 201,870 - -0.2 201,870 - -0.8 201,870 - -1.0 201,870 - -1.1 202,176 - -0.2 202,176 - +0.7 202,176 - -0.5 202,504 + GFF201 0.18 -1.3
Or see this region's nucleotide sequence