Strain Fitness in Methylophilus sp. DMC18 around GFF1990

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1988 and GFF1989 overlap by 14 nucleotidesGFF1989 and GFF1990 are separated by 1 nucleotidesGFF1990 and GFF1991 are separated by 114 nucleotides GFF1988 - Sigma54-dependent transcriptional activator SfnR, at 24,791 to 25,906 GFF1988 GFF1989 - Riboflavin biosynthesis protein RibBA, at 25,893 to 26,540 GFF1989 GFF1990 - hypothetical protein, at 26,542 to 27,156 GFF1990 GFF1991 - hypothetical protein, at 27,271 to 28,680 GFF1991 Position (kb) 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1at 25.546 kb on + strand, within GFF1988at 25.546 kb on + strand, within GFF1988at 25.546 kb on + strand, within GFF1988at 25.546 kb on + strand, within GFF1988at 25.546 kb on + strand, within GFF1988at 25.546 kb on + strand, within GFF1988at 25.546 kb on + strand, within GFF1988at 25.546 kb on + strand, within GFF1988at 25.547 kb on - strand, within GFF1988at 25.547 kb on - strand, within GFF1988at 25.547 kb on - strand, within GFF1988at 25.547 kb on - strand, within GFF1988at 25.547 kb on - strand, within GFF1988at 25.547 kb on - strand, within GFF1988at 25.599 kb on + strand, within GFF1988at 25.599 kb on + strand, within GFF1988at 25.635 kb on + strand, within GFF1988at 25.635 kb on + strand, within GFF1988at 25.635 kb on + strand, within GFF1988at 25.636 kb on - strand, within GFF1988at 25.636 kb on - strand, within GFF1988at 25.636 kb on - strand, within GFF1988at 25.636 kb on - strand, within GFF1988at 25.636 kb on - strand, within GFF1988at 25.636 kb on - strand, within GFF1988at 25.702 kb on + strand, within GFF1988at 25.703 kb on - strand, within GFF1988at 25.761 kb on - strand, within GFF1988at 25.761 kb on - strand, within GFF1988at 25.766 kb on + strand, within GFF1988at 25.767 kb on - strand, within GFF1988at 25.767 kb on - strand, within GFF1988at 25.767 kb on - strand, within GFF1988at 25.786 kb on - strand, within GFF1988at 25.900 kb on + strandat 25.900 kb on + strandat 25.900 kb on + strandat 25.901 kb on - strandat 25.901 kb on - strandat 25.984 kb on - strand, within GFF1989at 25.984 kb on - strand, within GFF1989at 25.984 kb on - strand, within GFF1989at 25.992 kb on + strand, within GFF1989at 25.993 kb on - strand, within GFF1989at 26.015 kb on + strand, within GFF1989at 26.015 kb on + strand, within GFF1989at 26.016 kb on - strand, within GFF1989at 26.016 kb on - strand, within GFF1989at 26.195 kb on + strand, within GFF1989at 26.196 kb on - strand, within GFF1989at 26.318 kb on - strand, within GFF1989at 26.331 kb on + strand, within GFF1989at 26.331 kb on + strand, within GFF1989at 26.332 kb on - strand, within GFF1989at 26.332 kb on - strand, within GFF1989at 26.348 kb on + strand, within GFF1989at 26.349 kb on - strand, within GFF1989at 26.349 kb on - strand, within GFF1989at 26.349 kb on - strand, within GFF1989at 26.349 kb on - strand, within GFF1989at 26.384 kb on - strand, within GFF1989at 26.384 kb on - strand, within GFF1989at 26.390 kb on + strand, within GFF1989at 26.391 kb on - strand, within GFF1989at 26.391 kb on - strand, within GFF1989at 26.468 kb on + strand, within GFF1989at 26.468 kb on + strand, within GFF1989at 26.468 kb on + strand, within GFF1989at 26.469 kb on - strand, within GFF1989at 26.469 kb on - strand, within GFF1989at 26.539 kb on - strandat 26.539 kb on - strandat 26.612 kb on - strand, within GFF1990at 26.732 kb on + strand, within GFF1990at 26.732 kb on + strand, within GFF1990at 26.733 kb on - strand, within GFF1990at 26.878 kb on + strand, within GFF1990at 26.946 kb on - strand, within GFF1990at 26.946 kb on - strand, within GFF1990at 27.193 kb on - strandat 27.193 kb on - strandat 27.263 kb on + strandat 27.263 kb on + strandat 27.263 kb on + strandat 27.263 kb on + strandat 27.263 kb on + strandat 27.263 kb on + strandat 27.264 kb on - strandat 27.264 kb on - strandat 27.264 kb on - strandat 27.264 kb on - strandat 27.264 kb on - strandat 27.341 kb on - strandat 27.374 kb on + strandat 27.374 kb on + strandat 27.382 kb on - strandat 27.393 kb on + strandat 27.393 kb on + strandat 27.393 kb on + strandat 27.394 kb on - strandat 27.394 kb on - strandat 27.394 kb on - strandat 27.394 kb on - strandat 27.394 kb on - strandat 27.394 kb on - strandat 27.402 kb on - strandat 27.415 kb on + strand, within GFF1991at 27.416 kb on - strand, within GFF1991at 27.459 kb on + strand, within GFF1991at 27.459 kb on + strand, within GFF1991at 27.574 kb on + strand, within GFF1991at 27.574 kb on + strand, within GFF1991at 27.574 kb on + strand, within GFF1991at 27.575 kb on - strand, within GFF1991at 27.654 kb on + strand, within GFF1991at 27.655 kb on - strand, within GFF1991at 27.655 kb on - strand, within GFF1991at 27.655 kb on - strand, within GFF1991at 27.662 kb on - strand, within GFF1991at 27.730 kb on + strand, within GFF1991at 27.731 kb on - strand, within GFF1991at 27.731 kb on - strand, within GFF1991at 27.731 kb on - strand, within GFF1991at 27.859 kb on + strand, within GFF1991at 27.859 kb on + strand, within GFF1991at 27.859 kb on + strand, within GFF1991at 27.860 kb on - strand, within GFF1991at 27.959 kb on - strand, within GFF1991at 27.959 kb on - strand, within GFF1991at 27.959 kb on - strand, within GFF1991at 27.959 kb on - strand, within GFF1991at 27.959 kb on - strand, within GFF1991at 27.959 kb on - strand, within GFF1991at 28.011 kb on - strand, within GFF1991at 28.011 kb on - strand, within GFF1991at 28.059 kb on - strand, within GFF1991at 28.059 kb on - strand, within GFF1991at 28.077 kb on + strand, within GFF1991at 28.077 kb on + strand, within GFF1991at 28.078 kb on - strand, within GFF1991at 28.078 kb on - strand, within GFF1991at 28.078 kb on - strand, within GFF1991at 28.081 kb on - strand, within GFF1991at 28.116 kb on + strand, within GFF1991at 28.116 kb on + strand, within GFF1991at 28.116 kb on + strand, within GFF1991at 28.117 kb on - strand, within GFF1991at 28.117 kb on - strand, within GFF1991at 28.121 kb on - strand, within GFF1991at 28.121 kb on - strand, within GFF1991at 28.131 kb on + strand, within GFF1991at 28.132 kb on - strand, within GFF1991at 28.132 kb on - strand, within GFF1991at 28.134 kb on + strand, within GFF1991at 28.134 kb on + strand, within GFF1991

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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25,546 + GFF1988 0.68 -0.8
25,546 + GFF1988 0.68 -0.3
25,546 + GFF1988 0.68 +0.6
25,546 + GFF1988 0.68 +0.7
25,546 + GFF1988 0.68 +0.4
25,546 + GFF1988 0.68 -1.1
25,546 + GFF1988 0.68 +0.9
25,546 + GFF1988 0.68 -1.4
25,547 - GFF1988 0.68 -2.9
25,547 - GFF1988 0.68 -0.4
25,547 - GFF1988 0.68 -1.4
25,547 - GFF1988 0.68 +0.5
25,547 - GFF1988 0.68 -0.4
25,547 - GFF1988 0.68 +0.9
25,599 + GFF1988 0.72 -0.6
25,599 + GFF1988 0.72 +0.1
25,635 + GFF1988 0.76 -1.2
25,635 + GFF1988 0.76 -1.1
25,635 + GFF1988 0.76 -0.3
25,636 - GFF1988 0.76 +0.9
25,636 - GFF1988 0.76 -1.2
25,636 - GFF1988 0.76 +0.5
25,636 - GFF1988 0.76 -1.4
25,636 - GFF1988 0.76 -1.2
25,636 - GFF1988 0.76 -0.3
25,702 + GFF1988 0.82 +0.9
25,703 - GFF1988 0.82 +0.1
25,761 - GFF1988 0.87 +0.1
25,761 - GFF1988 0.87 -1.1
25,766 + GFF1988 0.87 +0.3
25,767 - GFF1988 0.87 -0.3
25,767 - GFF1988 0.87 -1.6
25,767 - GFF1988 0.87 +0.2
25,786 - GFF1988 0.89 -1.1
25,900 + +0.5
25,900 + -0.3
25,900 + +0.1
25,901 - -0.6
25,901 - -0.3
25,984 - GFF1989 0.14 +0.4
25,984 - GFF1989 0.14 -0.6
25,984 - GFF1989 0.14 -1.1
25,992 + GFF1989 0.15 -1.9
25,993 - GFF1989 0.15 -1.1
26,015 + GFF1989 0.19 -2.1
26,015 + GFF1989 0.19 +0.5
26,016 - GFF1989 0.19 -0.0
26,016 - GFF1989 0.19 -0.1
26,195 + GFF1989 0.47 +0.4
26,196 - GFF1989 0.47 -0.6
26,318 - GFF1989 0.66 +0.5
26,331 + GFF1989 0.68 +0.3
26,331 + GFF1989 0.68 -0.2
26,332 - GFF1989 0.68 +0.3
26,332 - GFF1989 0.68 +0.2
26,348 + GFF1989 0.70 -0.4
26,349 - GFF1989 0.70 +0.9
26,349 - GFF1989 0.70 -1.3
26,349 - GFF1989 0.70 -0.2
26,349 - GFF1989 0.70 -1.1
26,384 - GFF1989 0.76 +0.3
26,384 - GFF1989 0.76 +0.7
26,390 + GFF1989 0.77 +0.2
26,391 - GFF1989 0.77 +0.7
26,391 - GFF1989 0.77 -1.0
26,468 + GFF1989 0.89 -0.4
26,468 + GFF1989 0.89 -0.7
26,468 + GFF1989 0.89 -0.6
26,469 - GFF1989 0.89 +0.7
26,469 - GFF1989 0.89 -0.4
26,539 - +0.5
26,539 - -1.1
26,612 - GFF1990 0.11 +0.9
26,732 + GFF1990 0.31 -0.4
26,732 + GFF1990 0.31 -0.1
26,733 - GFF1990 0.31 -0.1
26,878 + GFF1990 0.55 -0.1
26,946 - GFF1990 0.66 -0.3
26,946 - GFF1990 0.66 -0.2
27,193 - -0.7
27,193 - +0.6
27,263 + +0.4
27,263 + -0.4
27,263 + -0.6
27,263 + +0.2
27,263 + +0.1
27,263 + -0.8
27,264 - +0.0
27,264 - -1.2
27,264 - -1.0
27,264 - -0.6
27,264 - -0.8
27,341 - +0.9
27,374 + -0.4
27,374 + -0.9
27,382 - -0.8
27,393 + -0.3
27,393 + -0.4
27,393 + -1.6
27,394 - -0.5
27,394 - -0.4
27,394 - -0.6
27,394 - -1.1
27,394 - -0.4
27,394 - -0.8
27,402 - -0.4
27,415 + GFF1991 0.10 +0.6
27,416 - GFF1991 0.10 -0.9
27,459 + GFF1991 0.13 -0.3
27,459 + GFF1991 0.13 -0.6
27,574 + GFF1991 0.21 -0.3
27,574 + GFF1991 0.21 -0.6
27,574 + GFF1991 0.21 -1.0
27,575 - GFF1991 0.22 -0.9
27,654 + GFF1991 0.27 +0.5
27,655 - GFF1991 0.27 +1.2
27,655 - GFF1991 0.27 -2.2
27,655 - GFF1991 0.27 -1.4
27,662 - GFF1991 0.28 +0.2
27,730 + GFF1991 0.33 +0.2
27,731 - GFF1991 0.33 +0.1
27,731 - GFF1991 0.33 -1.1
27,731 - GFF1991 0.33 +0.3
27,859 + GFF1991 0.42 +0.8
27,859 + GFF1991 0.42 +0.9
27,859 + GFF1991 0.42 -0.2
27,860 - GFF1991 0.42 -1.1
27,959 - GFF1991 0.49 -1.4
27,959 - GFF1991 0.49 +0.1
27,959 - GFF1991 0.49 -0.9
27,959 - GFF1991 0.49 +0.8
27,959 - GFF1991 0.49 -0.1
27,959 - GFF1991 0.49 -0.2
28,011 - GFF1991 0.52 -0.1
28,011 - GFF1991 0.52 +0.3
28,059 - GFF1991 0.56 -1.0
28,059 - GFF1991 0.56 -0.9
28,077 + GFF1991 0.57 -0.1
28,077 + GFF1991 0.57 +0.4
28,078 - GFF1991 0.57 -1.0
28,078 - GFF1991 0.57 -0.6
28,078 - GFF1991 0.57 +0.3
28,081 - GFF1991 0.57 +0.3
28,116 + GFF1991 0.60 -0.1
28,116 + GFF1991 0.60 -0.4
28,116 + GFF1991 0.60 +0.1
28,117 - GFF1991 0.60 -1.6
28,117 - GFF1991 0.60 +0.7
28,121 - GFF1991 0.60 -1.1
28,121 - GFF1991 0.60 -0.7
28,131 + GFF1991 0.61 +0.2
28,132 - GFF1991 0.61 -0.8
28,132 - GFF1991 0.61 -0.1
28,134 + GFF1991 0.61 -0.2
28,134 + GFF1991 0.61 +0.3

Or see this region's nucleotide sequence