Strain Fitness in Methylophilus sp. DMC18 around GFF199

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF197 and GFF198 are separated by 122 nucleotidesGFF198 and GFF199 are separated by 25 nucleotidesGFF199 and GFF200 are separated by 15 nucleotides GFF197 - hypothetical protein, at 197,523 to 197,768 GFF197 GFF198 - hypothetical protein, at 197,891 to 198,550 GFF198 GFF199 - Nitrite reductase (NADH) small subunit, at 198,576 to 198,938 GFF199 GFF200 - Nitrite reductase [NAD(P)H], at 198,954 to 201,530 GFF200 Position (kb) 198 199Strain fitness (log2 ratio) -2 -1 0 1 2at 197.627 kb on + strand, within GFF197at 197.627 kb on + strand, within GFF197at 197.627 kb on + strand, within GFF197at 197.628 kb on - strand, within GFF197at 197.717 kb on + strand, within GFF197at 197.717 kb on + strand, within GFF197at 197.884 kb on + strandat 198.120 kb on + strand, within GFF198at 198.121 kb on - strand, within GFF198at 198.208 kb on + strand, within GFF198at 198.247 kb on + strand, within GFF198at 198.325 kb on - strand, within GFF198at 198.325 kb on - strand, within GFF198at 198.352 kb on + strand, within GFF198at 198.352 kb on + strand, within GFF198at 198.352 kb on + strand, within GFF198at 198.352 kb on + strand, within GFF198at 198.353 kb on - strand, within GFF198at 198.353 kb on - strand, within GFF198at 198.385 kb on + strand, within GFF198at 198.415 kb on + strand, within GFF198at 198.592 kb on - strandat 198.592 kb on - strandat 198.667 kb on - strand, within GFF199at 198.685 kb on + strand, within GFF199at 198.685 kb on + strand, within GFF199at 198.686 kb on - strand, within GFF199at 198.927 kb on + strandat 198.928 kb on - strandat 198.938 kb on + strandat 198.939 kb on - strandat 198.955 kb on + strandat 198.955 kb on + strandat 199.061 kb on + strandat 199.061 kb on + strandat 199.062 kb on - strandat 199.082 kb on + strandat 199.150 kb on + strandat 199.150 kb on + strandat 199.158 kb on + strandat 199.231 kb on + strand, within GFF200at 199.231 kb on + strand, within GFF200at 199.232 kb on - strand, within GFF200at 199.300 kb on + strand, within GFF200at 199.300 kb on + strand, within GFF200at 199.300 kb on + strand, within GFF200at 199.300 kb on + strand, within GFF200at 199.300 kb on + strand, within GFF200at 199.301 kb on - strand, within GFF200at 199.301 kb on - strand, within GFF200at 199.301 kb on - strand, within GFF200at 199.301 kb on - strand, within GFF200at 199.301 kb on - strand, within GFF200at 199.301 kb on - strand, within GFF200at 199.320 kb on + strand, within GFF200at 199.321 kb on - strand, within GFF200at 199.321 kb on - strand, within GFF200at 199.405 kb on + strand, within GFF200at 199.406 kb on - strand, within GFF200at 199.615 kb on - strand, within GFF200at 199.615 kb on - strand, within GFF200at 199.628 kb on - strand, within GFF200at 199.673 kb on + strand, within GFF200at 199.673 kb on + strand, within GFF200at 199.674 kb on - strand, within GFF200at 199.674 kb on - strand, within GFF200at 199.681 kb on - strand, within GFF200at 199.738 kb on + strand, within GFF200at 199.738 kb on + strand, within GFF200at 199.738 kb on + strand, within GFF200at 199.738 kb on + strand, within GFF200at 199.738 kb on + strand, within GFF200at 199.739 kb on - strand, within GFF200at 199.739 kb on - strand, within GFF200at 199.739 kb on - strand, within GFF200at 199.747 kb on + strand, within GFF200at 199.825 kb on + strand, within GFF200at 199.825 kb on + strand, within GFF200at 199.858 kb on + strand, within GFF200at 199.858 kb on + strand, within GFF200at 199.858 kb on + strand, within GFF200at 199.859 kb on - strand, within GFF200at 199.859 kb on - strand, within GFF200

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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197,627 + GFF197 0.42 -0.9
197,627 + GFF197 0.42 +0.4
197,627 + GFF197 0.42 -0.2
197,628 - GFF197 0.43 +0.2
197,717 + GFF197 0.79 -0.5
197,717 + GFF197 0.79 -0.1
197,884 + +0.0
198,120 + GFF198 0.35 +2.0
198,121 - GFF198 0.35 +0.0
198,208 + GFF198 0.48 -0.2
198,247 + GFF198 0.54 +1.4
198,325 - GFF198 0.66 -1.2
198,325 - GFF198 0.66 +0.0
198,352 + GFF198 0.70 +0.6
198,352 + GFF198 0.70 -1.0
198,352 + GFF198 0.70 -0.9
198,352 + GFF198 0.70 -0.4
198,353 - GFF198 0.70 -0.2
198,353 - GFF198 0.70 -0.1
198,385 + GFF198 0.75 -1.0
198,415 + GFF198 0.79 -1.3
198,592 - -1.0
198,592 - -1.0
198,667 - GFF199 0.25 -1.6
198,685 + GFF199 0.30 -0.6
198,685 + GFF199 0.30 -2.1
198,686 - GFF199 0.30 -0.6
198,927 + -1.2
198,928 - -1.5
198,938 + +0.0
198,939 - -1.0
198,955 + -1.2
198,955 + +0.4
199,061 + -1.2
199,061 + -1.7
199,062 - -0.3
199,082 + +0.0
199,150 + +0.0
199,150 + -1.0
199,158 + +0.0
199,231 + GFF200 0.11 -1.4
199,231 + GFF200 0.11 +0.0
199,232 - GFF200 0.11 -1.2
199,300 + GFF200 0.13 -1.0
199,300 + GFF200 0.13 -1.3
199,300 + GFF200 0.13 -1.5
199,300 + GFF200 0.13 -1.0
199,300 + GFF200 0.13 -0.6
199,301 - GFF200 0.13 -1.3
199,301 - GFF200 0.13 -2.6
199,301 - GFF200 0.13 +0.0
199,301 - GFF200 0.13 -0.1
199,301 - GFF200 0.13 +0.0
199,301 - GFF200 0.13 -1.0
199,320 + GFF200 0.14 -2.2
199,321 - GFF200 0.14 -0.2
199,321 - GFF200 0.14 -1.8
199,405 + GFF200 0.18 -1.0
199,406 - GFF200 0.18 -1.3
199,615 - GFF200 0.26 -0.5
199,615 - GFF200 0.26 -0.3
199,628 - GFF200 0.26 -1.2
199,673 + GFF200 0.28 +0.6
199,673 + GFF200 0.28 -0.3
199,674 - GFF200 0.28 -0.4
199,674 - GFF200 0.28 -0.6
199,681 - GFF200 0.28 -1.3
199,738 + GFF200 0.30 -0.6
199,738 + GFF200 0.30 +1.0
199,738 + GFF200 0.30 -0.9
199,738 + GFF200 0.30 -0.6
199,738 + GFF200 0.30 +0.0
199,739 - GFF200 0.30 -1.8
199,739 - GFF200 0.30 -0.1
199,739 - GFF200 0.30 -1.5
199,747 + GFF200 0.31 -1.0
199,825 + GFF200 0.34 -1.0
199,825 + GFF200 0.34 -0.8
199,858 + GFF200 0.35 -2.1
199,858 + GFF200 0.35 -1.0
199,858 + GFF200 0.35 +0.0
199,859 - GFF200 0.35 -1.8
199,859 - GFF200 0.35 -1.0

Or see this region's nucleotide sequence