Strain Fitness in Methylophilus sp. DMC18 around GFF192

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF191 and GFF192 are separated by 104 nucleotidesGFF192 and GFF193 are separated by 150 nucleotides GFF191 - NADPH dehydrogenase, at 188,986 to 190,101 GFF191 GFF192 - hypothetical protein, at 190,206 to 190,520 GFF192 GFF193 - hypothetical protein, at 190,671 to 192,203 GFF193 Position (kb) 190 191Strain fitness (log2 ratio) -2 -1 0 1at 189.277 kb on - strand, within GFF191at 189.277 kb on - strand, within GFF191at 189.277 kb on - strand, within GFF191at 189.294 kb on + strand, within GFF191at 189.295 kb on - strand, within GFF191at 189.392 kb on + strand, within GFF191at 189.393 kb on - strand, within GFF191at 189.393 kb on - strand, within GFF191at 189.472 kb on - strand, within GFF191at 189.504 kb on - strand, within GFF191at 189.504 kb on - strand, within GFF191at 189.523 kb on - strand, within GFF191at 189.554 kb on + strand, within GFF191at 189.554 kb on + strand, within GFF191at 189.555 kb on - strand, within GFF191at 189.555 kb on - strand, within GFF191at 189.555 kb on - strand, within GFF191at 189.555 kb on - strand, within GFF191at 189.903 kb on + strand, within GFF191at 189.903 kb on + strand, within GFF191at 189.904 kb on - strand, within GFF191at 189.922 kb on + strand, within GFF191at 190.022 kb on + strandat 190.022 kb on + strandat 190.023 kb on - strandat 190.023 kb on - strandat 190.023 kb on - strandat 190.057 kb on + strandat 190.073 kb on - strandat 190.102 kb on - strandat 190.102 kb on - strandat 190.176 kb on + strandat 190.189 kb on + strandat 190.190 kb on - strandat 190.190 kb on - strandat 190.190 kb on - strandat 190.190 kb on - strandat 190.194 kb on + strandat 190.218 kb on - strandat 190.231 kb on + strandat 190.231 kb on + strandat 190.248 kb on - strand, within GFF192at 190.248 kb on - strand, within GFF192at 190.260 kb on + strand, within GFF192at 190.260 kb on + strand, within GFF192at 190.260 kb on + strand, within GFF192at 190.260 kb on + strand, within GFF192at 190.260 kb on + strand, within GFF192at 190.261 kb on - strand, within GFF192at 190.261 kb on - strand, within GFF192at 190.480 kb on + strand, within GFF192at 190.495 kb on + strandat 190.495 kb on + strandat 190.495 kb on + strandat 190.496 kb on - strandat 190.554 kb on + strandat 190.554 kb on + strandat 190.554 kb on + strandat 190.554 kb on + strandat 190.555 kb on - strandat 190.555 kb on - strandat 190.555 kb on - strandat 190.555 kb on - strandat 190.555 kb on - strandat 190.555 kb on - strandat 190.574 kb on + strandat 190.655 kb on + strandat 190.655 kb on + strandat 190.655 kb on + strandat 190.655 kb on + strandat 190.655 kb on + strandat 190.656 kb on - strandat 190.660 kb on + strandat 190.660 kb on + strandat 190.660 kb on + strandat 190.670 kb on + strandat 190.671 kb on - strandat 190.671 kb on - strandat 190.809 kb on + strandat 190.809 kb on + strandat 190.809 kb on + strandat 190.809 kb on + strandat 190.822 kb on + strandat 190.822 kb on + strandat 190.822 kb on + strandat 190.823 kb on - strandat 190.921 kb on - strand, within GFF193at 190.932 kb on + strand, within GFF193at 190.932 kb on + strand, within GFF193at 190.932 kb on + strand, within GFF193at 190.932 kb on + strand, within GFF193at 190.933 kb on - strand, within GFF193at 190.949 kb on + strand, within GFF193at 190.964 kb on - strand, within GFF193at 190.966 kb on + strand, within GFF193at 190.966 kb on + strand, within GFF193at 190.966 kb on + strand, within GFF193at 191.003 kb on + strand, within GFF193at 191.004 kb on - strand, within GFF193at 191.009 kb on + strand, within GFF193at 191.009 kb on + strand, within GFF193at 191.010 kb on - strand, within GFF193at 191.041 kb on + strand, within GFF193at 191.056 kb on + strand, within GFF193at 191.062 kb on + strand, within GFF193at 191.062 kb on + strand, within GFF193at 191.062 kb on + strand, within GFF193at 191.062 kb on + strand, within GFF193at 191.063 kb on - strand, within GFF193at 191.063 kb on - strand, within GFF193at 191.087 kb on + strand, within GFF193at 191.112 kb on + strand, within GFF193at 191.112 kb on + strand, within GFF193at 191.113 kb on - strand, within GFF193at 191.139 kb on + strand, within GFF193at 191.139 kb on + strand, within GFF193at 191.140 kb on - strand, within GFF193at 191.140 kb on - strand, within GFF193at 191.141 kb on + strand, within GFF193at 191.141 kb on + strand, within GFF193at 191.141 kb on + strand, within GFF193at 191.141 kb on + strand, within GFF193at 191.144 kb on + strand, within GFF193at 191.144 kb on + strand, within GFF193at 191.144 kb on + strand, within GFF193at 191.144 kb on + strand, within GFF193at 191.145 kb on - strand, within GFF193at 191.145 kb on - strand, within GFF193at 191.145 kb on - strand, within GFF193at 191.145 kb on - strand, within GFF193at 191.145 kb on - strand, within GFF193at 191.145 kb on - strand, within GFF193at 191.145 kb on - strand, within GFF193at 191.150 kb on - strand, within GFF193at 191.177 kb on + strand, within GFF193at 191.177 kb on + strand, within GFF193at 191.177 kb on + strand, within GFF193at 191.178 kb on - strand, within GFF193at 191.178 kb on - strand, within GFF193at 191.217 kb on - strand, within GFF193at 191.243 kb on + strand, within GFF193at 191.257 kb on - strand, within GFF193at 191.257 kb on - strand, within GFF193at 191.281 kb on + strand, within GFF193at 191.282 kb on - strand, within GFF193at 191.312 kb on - strand, within GFF193at 191.358 kb on + strand, within GFF193at 191.358 kb on + strand, within GFF193at 191.358 kb on + strand, within GFF193at 191.359 kb on - strand, within GFF193at 191.360 kb on + strand, within GFF193at 191.360 kb on + strand, within GFF193at 191.404 kb on + strand, within GFF193at 191.404 kb on + strand, within GFF193at 191.405 kb on - strand, within GFF193

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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189,277 - GFF191 0.26 -0.8
189,277 - GFF191 0.26 +0.0
189,277 - GFF191 0.26 -0.6
189,294 + GFF191 0.28 -1.0
189,295 - GFF191 0.28 -1.0
189,392 + GFF191 0.36 -0.2
189,393 - GFF191 0.36 +0.0
189,393 - GFF191 0.36 -1.0
189,472 - GFF191 0.44 +0.5
189,504 - GFF191 0.46 +0.0
189,504 - GFF191 0.46 -0.6
189,523 - GFF191 0.48 -1.0
189,554 + GFF191 0.51 -1.0
189,554 + GFF191 0.51 +0.0
189,555 - GFF191 0.51 -0.7
189,555 - GFF191 0.51 -0.1
189,555 - GFF191 0.51 -0.4
189,555 - GFF191 0.51 -0.9
189,903 + GFF191 0.82 +0.0
189,903 + GFF191 0.82 -0.3
189,904 - GFF191 0.82 +0.5
189,922 + GFF191 0.84 -0.4
190,022 + +0.3
190,022 + -0.2
190,023 - -1.3
190,023 - -0.3
190,023 - -1.0
190,057 + -1.3
190,073 - -0.8
190,102 - +0.1
190,102 - -1.9
190,176 + -1.1
190,189 + -0.8
190,190 - -1.3
190,190 - +0.4
190,190 - -0.6
190,190 - +1.6
190,194 + -0.2
190,218 - -1.0
190,231 + -1.3
190,231 + +0.5
190,248 - GFF192 0.13 -1.3
190,248 - GFF192 0.13 -1.3
190,260 + GFF192 0.17 -1.1
190,260 + GFF192 0.17 -0.4
190,260 + GFF192 0.17 -1.3
190,260 + GFF192 0.17 -0.3
190,260 + GFF192 0.17 +0.6
190,261 - GFF192 0.17 +0.4
190,261 - GFF192 0.17 -1.0
190,480 + GFF192 0.87 -0.6
190,495 + +1.0
190,495 + +0.6
190,495 + -0.7
190,496 - -1.3
190,554 + -1.3
190,554 + +0.6
190,554 + +0.7
190,554 + +0.0
190,555 - -1.0
190,555 - +0.3
190,555 - +0.0
190,555 - +1.0
190,555 - -0.3
190,555 - -0.5
190,574 + +0.3
190,655 + -1.7
190,655 + -0.2
190,655 + -0.3
190,655 + -1.5
190,655 + +1.0
190,656 - -0.2
190,660 + +0.1
190,660 + +0.0
190,660 + -1.2
190,670 + +0.1
190,671 - -0.3
190,671 - +0.6
190,809 + +0.0
190,809 + +0.2
190,809 + +0.0
190,809 + -0.3
190,822 + -0.3
190,822 + -1.0
190,822 + +0.3
190,823 - +0.3
190,921 - GFF193 0.16 +0.3
190,932 + GFF193 0.17 -0.2
190,932 + GFF193 0.17 -1.9
190,932 + GFF193 0.17 -0.8
190,932 + GFF193 0.17 -1.1
190,933 - GFF193 0.17 -0.8
190,949 + GFF193 0.18 -0.6
190,964 - GFF193 0.19 +0.1
190,966 + GFF193 0.19 +0.3
190,966 + GFF193 0.19 -0.2
190,966 + GFF193 0.19 -1.0
191,003 + GFF193 0.22 -2.5
191,004 - GFF193 0.22 +0.9
191,009 + GFF193 0.22 -0.8
191,009 + GFF193 0.22 +0.4
191,010 - GFF193 0.22 -0.3
191,041 + GFF193 0.24 -0.2
191,056 + GFF193 0.25 +0.8
191,062 + GFF193 0.26 -0.4
191,062 + GFF193 0.26 +0.8
191,062 + GFF193 0.26 -0.2
191,062 + GFF193 0.26 -0.4
191,063 - GFF193 0.26 +0.6
191,063 - GFF193 0.26 -0.9
191,087 + GFF193 0.27 +0.3
191,112 + GFF193 0.29 -1.8
191,112 + GFF193 0.29 +0.4
191,113 - GFF193 0.29 -0.5
191,139 + GFF193 0.31 -0.9
191,139 + GFF193 0.31 -1.3
191,140 - GFF193 0.31 +0.1
191,140 - GFF193 0.31 -0.3
191,141 + GFF193 0.31 +0.1
191,141 + GFF193 0.31 +0.3
191,141 + GFF193 0.31 +0.0
191,141 + GFF193 0.31 -0.6
191,144 + GFF193 0.31 +0.0
191,144 + GFF193 0.31 -1.0
191,144 + GFF193 0.31 -1.5
191,144 + GFF193 0.31 +0.0
191,145 - GFF193 0.31 +1.0
191,145 - GFF193 0.31 +1.0
191,145 - GFF193 0.31 -1.0
191,145 - GFF193 0.31 +0.0
191,145 - GFF193 0.31 -1.5
191,145 - GFF193 0.31 -1.6
191,145 - GFF193 0.31 -0.7
191,150 - GFF193 0.31 -1.0
191,177 + GFF193 0.33 -0.1
191,177 + GFF193 0.33 -0.6
191,177 + GFF193 0.33 +0.3
191,178 - GFF193 0.33 +0.2
191,178 - GFF193 0.33 +0.2
191,217 - GFF193 0.36 +0.4
191,243 + GFF193 0.37 +0.3
191,257 - GFF193 0.38 +0.6
191,257 - GFF193 0.38 -0.8
191,281 + GFF193 0.40 -0.9
191,282 - GFF193 0.40 -0.6
191,312 - GFF193 0.42 +0.4
191,358 + GFF193 0.45 -0.6
191,358 + GFF193 0.45 -0.2
191,358 + GFF193 0.45 +0.2
191,359 - GFF193 0.45 -1.0
191,360 + GFF193 0.45 +0.0
191,360 + GFF193 0.45 -1.3
191,404 + GFF193 0.48 -1.0
191,404 + GFF193 0.48 -0.5
191,405 - GFF193 0.48 -0.1

Or see this region's nucleotide sequence