Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1905 and GFF1906 are separated by 13 nucleotides GFF1906 and GFF1907 are separated by 99 nucleotides GFF1907 and GFF1908 are separated by 110 nucleotides
GFF1905 - hypothetical protein, at 552,810 to 555,584
GFF1905
GFF1906 - Peptidyl-tRNA hydrolase, at 555,598 to 556,170
GFF1906
GFF1907 - 50S ribosomal protein L25, at 556,270 to 556,878
GFF1907
GFF1908 - Ribose-phosphate pyrophosphokinase, at 556,989 to 557,924
GFF1908
Position (kb) 556
557 Strain fitness (log2 ratio) -2
-1
0
1 at 555.312 kb on + strand at 555.312 kb on + strand at 555.313 kb on - strand at 555.451 kb on + strand at 555.452 kb on - strand at 555.492 kb on + strand at 555.496 kb on - strand at 555.569 kb on + strand at 555.570 kb on - strand at 555.582 kb on + strand at 555.582 kb on + strand at 555.583 kb on - strand at 555.599 kb on + strand at 555.599 kb on + strand at 555.600 kb on - strand at 555.600 kb on - strand at 556.170 kb on + strand at 556.170 kb on + strand at 556.192 kb on - strand at 556.192 kb on - strand at 556.228 kb on + strand at 556.228 kb on + strand at 556.228 kb on + strand at 556.229 kb on - strand at 556.229 kb on - strand at 556.229 kb on - strand at 556.229 kb on - strand at 556.229 kb on - strand at 556.229 kb on - strand at 556.229 kb on - strand at 556.229 kb on - strand at 556.229 kb on - strand at 556.271 kb on + strand at 556.271 kb on + strand at 556.271 kb on + strand at 556.272 kb on - strand at 556.272 kb on - strand at 556.272 kb on - strand at 556.272 kb on - strand at 556.272 kb on - strand at 556.364 kb on - strand, within GFF1907 at 556.364 kb on - strand, within GFF1907 at 556.364 kb on - strand, within GFF1907 at 556.364 kb on - strand, within GFF1907 at 556.364 kb on - strand, within GFF1907 at 556.477 kb on - strand, within GFF1907 at 556.957 kb on - strand at 556.957 kb on - strand at 556.991 kb on - strand at 556.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 555,312 + -1.2 555,312 + -0.7 555,313 - -1.6 555,451 + -0.2 555,452 - +1.1 555,492 + -1.0 555,496 - -1.1 555,569 + +0.5 555,570 - +0.7 555,582 + -1.0 555,582 + -0.9 555,583 - -1.0 555,599 + -1.6 555,599 + -0.5 555,600 - -0.3 555,600 - +0.4 556,170 + -1.0 556,170 + -1.9 556,192 - -0.5 556,192 - -0.4 556,228 + +0.1 556,228 + -0.6 556,228 + -0.0 556,229 - +1.5 556,229 - -0.3 556,229 - -1.6 556,229 - -0.5 556,229 - -1.0 556,229 - -1.1 556,229 - -0.1 556,229 - -0.3 556,229 - -0.7 556,271 + -1.4 556,271 + +0.4 556,271 + -0.5 556,272 - -0.4 556,272 - -0.4 556,272 - -0.6 556,272 - -0.9 556,272 - -0.7 556,364 - GFF1907 0.15 -1.0 556,364 - GFF1907 0.15 -0.0 556,364 - GFF1907 0.15 -1.2 556,364 - GFF1907 0.15 +0.4 556,364 - GFF1907 0.15 -1.6 556,477 - GFF1907 0.34 -2.0 556,957 - -1.0 556,957 - +0.3 556,991 - -0.2 556,998 - +0.3
Or see this region's nucleotide sequence