Strain Fitness in Methylophilus sp. DMC18 around GFF1904

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1903 and GFF1904 are separated by 54 nucleotidesGFF1904 and GFF1905 are separated by 217 nucleotides GFF1903 - hypothetical protein, at 550,802 to 551,452 GFF1903 GFF1904 - Ribosome-binding ATPase YchF, at 551,507 to 552,592 GFF1904 GFF1905 - hypothetical protein, at 552,810 to 555,584 GFF1905 Position (kb) 551 552 553Strain fitness (log2 ratio) -2 -1 0 1at 550.554 kb on - strandat 550.563 kb on + strandat 550.597 kb on + strandat 550.597 kb on + strandat 550.598 kb on - strandat 550.598 kb on - strandat 550.747 kb on + strandat 550.747 kb on + strandat 550.748 kb on - strandat 550.801 kb on + strandat 550.801 kb on + strandat 550.813 kb on + strandat 550.814 kb on - strandat 550.815 kb on + strandat 550.824 kb on + strandat 550.922 kb on + strand, within GFF1903at 550.922 kb on + strand, within GFF1903at 550.922 kb on + strand, within GFF1903at 550.922 kb on + strand, within GFF1903at 550.922 kb on + strand, within GFF1903at 550.923 kb on - strand, within GFF1903at 550.924 kb on + strand, within GFF1903at 550.924 kb on + strand, within GFF1903at 550.924 kb on + strand, within GFF1903at 550.924 kb on + strand, within GFF1903at 550.924 kb on + strand, within GFF1903at 550.925 kb on - strand, within GFF1903at 550.925 kb on - strand, within GFF1903at 550.937 kb on - strand, within GFF1903at 551.064 kb on + strand, within GFF1903at 551.067 kb on + strand, within GFF1903at 551.068 kb on - strand, within GFF1903at 551.068 kb on - strand, within GFF1903at 551.150 kb on + strand, within GFF1903at 551.150 kb on + strand, within GFF1903at 551.150 kb on + strand, within GFF1903at 551.150 kb on + strand, within GFF1903at 551.150 kb on + strand, within GFF1903at 551.151 kb on - strand, within GFF1903at 551.151 kb on - strand, within GFF1903at 551.151 kb on - strand, within GFF1903at 551.158 kb on + strand, within GFF1903at 551.158 kb on + strand, within GFF1903at 551.158 kb on + strand, within GFF1903at 551.158 kb on + strand, within GFF1903at 551.158 kb on + strand, within GFF1903at 551.158 kb on + strand, within GFF1903at 551.159 kb on - strand, within GFF1903at 551.159 kb on - strand, within GFF1903at 551.159 kb on - strand, within GFF1903at 551.159 kb on - strand, within GFF1903at 551.223 kb on - strand, within GFF1903at 551.284 kb on + strand, within GFF1903at 551.284 kb on + strand, within GFF1903at 551.285 kb on - strand, within GFF1903at 551.285 kb on - strand, within GFF1903at 551.288 kb on + strand, within GFF1903at 551.288 kb on + strand, within GFF1903at 551.288 kb on + strand, within GFF1903at 551.288 kb on + strand, within GFF1903at 551.288 kb on + strand, within GFF1903at 551.288 kb on + strand, within GFF1903at 551.288 kb on + strand, within GFF1903at 551.289 kb on - strand, within GFF1903at 551.289 kb on - strand, within GFF1903at 551.289 kb on - strand, within GFF1903at 551.289 kb on - strand, within GFF1903at 551.289 kb on - strand, within GFF1903at 551.289 kb on - strand, within GFF1903at 551.289 kb on - strand, within GFF1903at 551.315 kb on + strand, within GFF1903at 551.315 kb on + strand, within GFF1903at 551.316 kb on - strand, within GFF1903at 551.353 kb on + strand, within GFF1903at 551.353 kb on + strand, within GFF1903at 551.407 kb on + strandat 551.408 kb on - strandat 551.408 kb on - strandat 551.458 kb on - strandat 551.500 kb on + strandat 551.501 kb on - strandat 551.501 kb on - strandat 551.501 kb on - strandat 551.501 kb on - strandat 551.501 kb on - strandat 551.501 kb on - strandat 551.501 kb on - strandat 551.508 kb on + strandat 551.508 kb on + strandat 551.553 kb on + strandat 551.553 kb on + strandat 551.579 kb on - strandat 551.610 kb on + strandat 551.610 kb on + strandat 551.611 kb on - strandat 551.619 kb on + strand, within GFF1904at 551.620 kb on - strand, within GFF1904at 551.620 kb on - strand, within GFF1904at 551.754 kb on + strand, within GFF1904at 551.754 kb on + strand, within GFF1904at 551.988 kb on + strand, within GFF1904at 551.988 kb on + strand, within GFF1904at 551.988 kb on + strand, within GFF1904at 551.988 kb on + strand, within GFF1904at 551.988 kb on + strand, within GFF1904at 551.988 kb on + strand, within GFF1904at 551.989 kb on - strand, within GFF1904at 551.989 kb on - strand, within GFF1904at 551.989 kb on - strand, within GFF1904at 551.989 kb on - strand, within GFF1904at 551.989 kb on - strand, within GFF1904at 551.989 kb on - strand, within GFF1904at 551.989 kb on - strand, within GFF1904at 551.989 kb on - strand, within GFF1904at 551.989 kb on - strand, within GFF1904at 551.989 kb on - strand, within GFF1904at 551.989 kb on - strand, within GFF1904at 551.989 kb on - strand, within GFF1904at 551.989 kb on - strand, within GFF1904at 551.989 kb on - strand, within GFF1904at 551.989 kb on - strand, within GFF1904at 552.100 kb on + strand, within GFF1904at 552.243 kb on - strand, within GFF1904at 552.243 kb on - strand, within GFF1904at 552.243 kb on - strand, within GFF1904at 552.467 kb on + strand, within GFF1904at 552.468 kb on - strand, within GFF1904at 552.468 kb on - strand, within GFF1904at 552.468 kb on - strand, within GFF1904at 552.468 kb on - strand, within GFF1904at 552.468 kb on - strand, within GFF1904at 552.504 kb on + strandat 552.504 kb on + strandat 552.504 kb on + strandat 552.561 kb on - strandat 552.566 kb on - strandat 552.593 kb on - strandat 552.664 kb on + strandat 552.681 kb on + strandat 552.682 kb on - strandat 552.682 kb on - strandat 552.710 kb on - strandat 552.710 kb on - strandat 552.807 kb on + strandat 552.807 kb on + strandat 552.807 kb on + strandat 552.808 kb on - strandat 552.808 kb on - strandat 552.951 kb on - strandat 552.998 kb on + strandat 553.083 kb on + strandat 553.083 kb on + strandat 553.095 kb on + strand, within GFF1905at 553.095 kb on + strand, within GFF1905at 553.113 kb on + strand, within GFF1905at 553.114 kb on - strand, within GFF1905at 553.123 kb on + strand, within GFF1905at 553.123 kb on + strand, within GFF1905at 553.124 kb on - strand, within GFF1905at 553.124 kb on - strand, within GFF1905at 553.132 kb on + strand, within GFF1905at 553.133 kb on - strand, within GFF1905at 553.146 kb on + strand, within GFF1905at 553.146 kb on + strand, within GFF1905at 553.146 kb on + strand, within GFF1905at 553.146 kb on + strand, within GFF1905at 553.146 kb on + strand, within GFF1905at 553.147 kb on - strand, within GFF1905at 553.147 kb on - strand, within GFF1905at 553.147 kb on - strand, within GFF1905at 553.147 kb on - strand, within GFF1905at 553.161 kb on + strand, within GFF1905at 553.175 kb on + strand, within GFF1905at 553.175 kb on + strand, within GFF1905at 553.257 kb on + strand, within GFF1905at 553.257 kb on + strand, within GFF1905at 553.257 kb on + strand, within GFF1905at 553.257 kb on + strand, within GFF1905at 553.257 kb on + strand, within GFF1905at 553.257 kb on + strand, within GFF1905at 553.258 kb on - strand, within GFF1905at 553.258 kb on - strand, within GFF1905at 553.258 kb on - strand, within GFF1905at 553.258 kb on - strand, within GFF1905at 553.259 kb on + strand, within GFF1905at 553.259 kb on + strand, within GFF1905at 553.259 kb on + strand, within GFF1905at 553.260 kb on - strand, within GFF1905at 553.260 kb on - strand, within GFF1905at 553.260 kb on - strand, within GFF1905at 553.298 kb on + strand, within GFF1905at 553.299 kb on - strand, within GFF1905at 553.304 kb on + strand, within GFF1905at 553.305 kb on - strand, within GFF1905at 553.382 kb on + strand, within GFF1905at 553.382 kb on + strand, within GFF1905at 553.411 kb on - strand, within GFF1905at 553.431 kb on + strand, within GFF1905at 553.432 kb on - strand, within GFF1905

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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550,554 - -0.8
550,563 + -0.8
550,597 + -1.0
550,597 + +0.2
550,598 - +0.2
550,598 - +0.6
550,747 + +0.4
550,747 + -0.1
550,748 - -1.0
550,801 + -0.0
550,801 + +0.6
550,813 + +0.4
550,814 - -0.8
550,815 + -0.5
550,824 + -0.4
550,922 + GFF1903 0.18 -0.6
550,922 + GFF1903 0.18 -0.0
550,922 + GFF1903 0.18 -0.5
550,922 + GFF1903 0.18 -1.0
550,922 + GFF1903 0.18 -0.4
550,923 - GFF1903 0.19 -1.4
550,924 + GFF1903 0.19 +0.7
550,924 + GFF1903 0.19 +1.5
550,924 + GFF1903 0.19 -0.6
550,924 + GFF1903 0.19 +1.0
550,924 + GFF1903 0.19 -0.9
550,925 - GFF1903 0.19 +1.0
550,925 - GFF1903 0.19 +0.4
550,937 - GFF1903 0.21 -0.5
551,064 + GFF1903 0.40 -0.0
551,067 + GFF1903 0.41 -0.5
551,068 - GFF1903 0.41 +0.6
551,068 - GFF1903 0.41 -0.0
551,150 + GFF1903 0.53 -0.2
551,150 + GFF1903 0.53 +1.4
551,150 + GFF1903 0.53 -0.3
551,150 + GFF1903 0.53 +1.2
551,150 + GFF1903 0.53 +0.0
551,151 - GFF1903 0.54 +1.0
551,151 - GFF1903 0.54 -0.0
551,151 - GFF1903 0.54 -2.7
551,158 + GFF1903 0.55 +1.0
551,158 + GFF1903 0.55 -1.4
551,158 + GFF1903 0.55 -0.2
551,158 + GFF1903 0.55 -1.0
551,158 + GFF1903 0.55 -1.1
551,158 + GFF1903 0.55 -1.0
551,159 - GFF1903 0.55 -1.4
551,159 - GFF1903 0.55 -1.0
551,159 - GFF1903 0.55 +0.8
551,159 - GFF1903 0.55 +1.0
551,223 - GFF1903 0.65 +0.7
551,284 + GFF1903 0.74 -0.6
551,284 + GFF1903 0.74 +0.6
551,285 - GFF1903 0.74 -0.4
551,285 - GFF1903 0.74 -1.4
551,288 + GFF1903 0.75 -0.8
551,288 + GFF1903 0.75 +1.5
551,288 + GFF1903 0.75 -0.3
551,288 + GFF1903 0.75 -0.9
551,288 + GFF1903 0.75 -1.4
551,288 + GFF1903 0.75 -0.7
551,288 + GFF1903 0.75 +0.0
551,289 - GFF1903 0.75 -1.9
551,289 - GFF1903 0.75 +0.4
551,289 - GFF1903 0.75 -1.0
551,289 - GFF1903 0.75 +0.1
551,289 - GFF1903 0.75 -0.0
551,289 - GFF1903 0.75 +0.4
551,289 - GFF1903 0.75 -0.4
551,315 + GFF1903 0.79 +0.3
551,315 + GFF1903 0.79 -0.5
551,316 - GFF1903 0.79 -0.0
551,353 + GFF1903 0.85 -0.8
551,353 + GFF1903 0.85 -1.0
551,407 + -0.0
551,408 - -0.0
551,408 - -0.6
551,458 - -1.9
551,500 + -0.0
551,501 - -0.0
551,501 - +0.4
551,501 - -0.3
551,501 - +0.1
551,501 - -0.2
551,501 - -0.9
551,501 - -1.0
551,508 + -0.3
551,508 + +0.3
551,553 + -1.0
551,553 + -0.9
551,579 - -0.0
551,610 + -0.0
551,610 + -1.0
551,611 - -0.0
551,619 + GFF1904 0.10 -1.6
551,620 - GFF1904 0.10 -1.4
551,620 - GFF1904 0.10 -0.9
551,754 + GFF1904 0.23 -1.6
551,754 + GFF1904 0.23 -1.6
551,988 + GFF1904 0.44 -1.9
551,988 + GFF1904 0.44 -1.0
551,988 + GFF1904 0.44 -0.0
551,988 + GFF1904 0.44 -1.4
551,988 + GFF1904 0.44 -1.0
551,988 + GFF1904 0.44 -0.3
551,989 - GFF1904 0.44 -0.6
551,989 - GFF1904 0.44 -0.4
551,989 - GFF1904 0.44 +0.1
551,989 - GFF1904 0.44 -1.4
551,989 - GFF1904 0.44 -1.4
551,989 - GFF1904 0.44 +0.5
551,989 - GFF1904 0.44 -0.9
551,989 - GFF1904 0.44 +1.0
551,989 - GFF1904 0.44 -0.9
551,989 - GFF1904 0.44 -0.0
551,989 - GFF1904 0.44 -1.4
551,989 - GFF1904 0.44 +0.2
551,989 - GFF1904 0.44 +0.4
551,989 - GFF1904 0.44 +1.0
551,989 - GFF1904 0.44 -1.0
552,100 + GFF1904 0.55 -0.6
552,243 - GFF1904 0.68 -1.0
552,243 - GFF1904 0.68 -0.0
552,243 - GFF1904 0.68 +0.1
552,467 + GFF1904 0.88 +0.5
552,468 - GFF1904 0.88 -1.0
552,468 - GFF1904 0.88 -0.5
552,468 - GFF1904 0.88 +1.0
552,468 - GFF1904 0.88 -1.0
552,468 - GFF1904 0.88 -0.9
552,504 + -1.4
552,504 + -0.0
552,504 + -0.0
552,561 - -1.5
552,566 - -1.0
552,593 - -0.5
552,664 + -0.5
552,681 + -0.0
552,682 - -2.0
552,682 - -0.6
552,710 - +0.2
552,710 - +0.3
552,807 + -1.4
552,807 + +0.7
552,807 + -0.3
552,808 - +0.3
552,808 - -0.4
552,951 - -0.7
552,998 + +0.1
553,083 + +0.3
553,083 + -1.1
553,095 + GFF1905 0.10 +1.0
553,095 + GFF1905 0.10 -0.0
553,113 + GFF1905 0.11 +0.5
553,114 - GFF1905 0.11 -1.0
553,123 + GFF1905 0.11 -0.2
553,123 + GFF1905 0.11 -0.4
553,124 - GFF1905 0.11 -0.5
553,124 - GFF1905 0.11 +0.1
553,132 + GFF1905 0.12 +0.2
553,133 - GFF1905 0.12 +0.1
553,146 + GFF1905 0.12 +0.5
553,146 + GFF1905 0.12 +0.6
553,146 + GFF1905 0.12 -1.5
553,146 + GFF1905 0.12 -1.0
553,146 + GFF1905 0.12 -0.3
553,147 - GFF1905 0.12 -0.4
553,147 - GFF1905 0.12 -0.0
553,147 - GFF1905 0.12 +1.2
553,147 - GFF1905 0.12 +0.2
553,161 + GFF1905 0.13 -0.0
553,175 + GFF1905 0.13 -0.9
553,175 + GFF1905 0.13 -0.6
553,257 + GFF1905 0.16 -0.6
553,257 + GFF1905 0.16 -0.6
553,257 + GFF1905 0.16 -0.4
553,257 + GFF1905 0.16 -0.3
553,257 + GFF1905 0.16 +0.4
553,257 + GFF1905 0.16 +1.0
553,258 - GFF1905 0.16 -1.2
553,258 - GFF1905 0.16 -1.0
553,258 - GFF1905 0.16 -1.4
553,258 - GFF1905 0.16 -0.6
553,259 + GFF1905 0.16 -0.9
553,259 + GFF1905 0.16 -0.1
553,259 + GFF1905 0.16 -1.5
553,260 - GFF1905 0.16 -1.9
553,260 - GFF1905 0.16 -0.9
553,260 - GFF1905 0.16 -0.5
553,298 + GFF1905 0.18 -0.6
553,299 - GFF1905 0.18 -1.0
553,304 + GFF1905 0.18 -0.0
553,305 - GFF1905 0.18 -0.0
553,382 + GFF1905 0.21 -1.0
553,382 + GFF1905 0.21 -0.1
553,411 - GFF1905 0.22 -0.4
553,431 + GFF1905 0.22 -0.0
553,432 - GFF1905 0.22 -0.0

Or see this region's nucleotide sequence