Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1742 and GFF1743 are separated by 60 nucleotides GFF1743 and GFF1744 are separated by 445 nucleotides GFF1744 and GFF1745 are separated by 156 nucleotides
GFF1742 - Protein translocase subunit SecD, at 379,194 to 381,023
GFF1742
GFF1743 - Sec translocon accessory complex subunit YajC, at 381,084 to 381,398
GFF1743
GFF1744 - Queuine tRNA-ribosyltransferase, at 381,844 to 383,034
GFF1744
GFF1745 - hypothetical protein, at 383,191 to 383,979
GFF1745
Position (kb) 381
382
383
384 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 381.422 kb on - strand at 381.429 kb on - strand at 381.461 kb on + strand at 381.461 kb on + strand at 381.461 kb on + strand at 381.461 kb on + strand at 381.462 kb on - strand at 381.462 kb on - strand at 381.462 kb on - strand at 381.498 kb on - strand at 381.517 kb on - strand at 381.550 kb on + strand at 381.550 kb on + strand at 381.561 kb on - strand at 381.561 kb on - strand at 381.563 kb on + strand at 381.563 kb on + strand at 381.563 kb on + strand at 381.564 kb on - strand at 381.564 kb on - strand at 381.566 kb on + strand at 381.566 kb on + strand at 381.566 kb on + strand at 381.566 kb on + strand at 381.566 kb on + strand at 381.567 kb on - strand at 381.567 kb on - strand at 381.567 kb on - strand at 381.567 kb on - strand at 381.567 kb on - strand at 381.575 kb on + strand at 381.577 kb on + strand at 381.578 kb on - strand at 381.595 kb on + strand at 381.598 kb on + strand at 381.599 kb on - strand at 381.599 kb on - strand at 381.708 kb on + strand at 381.708 kb on + strand at 381.708 kb on + strand at 381.709 kb on - strand at 381.709 kb on - strand at 381.709 kb on - strand at 381.749 kb on + strand at 381.750 kb on - strand at 381.750 kb on - strand at 381.778 kb on + strand at 381.779 kb on - strand at 381.794 kb on + strand at 381.800 kb on + strand at 381.800 kb on + strand at 381.800 kb on + strand at 381.801 kb on - strand at 381.801 kb on - strand at 381.801 kb on - strand at 381.801 kb on - strand at 381.801 kb on - strand at 381.801 kb on - strand at 381.825 kb on + strand at 381.825 kb on + strand at 381.846 kb on - strand at 381.941 kb on + strand at 381.942 kb on - strand at 381.942 kb on - strand at 381.944 kb on + strand at 381.955 kb on - strand at 382.013 kb on + strand, within GFF1744 at 382.014 kb on - strand, within GFF1744 at 382.014 kb on - strand, within GFF1744 at 382.038 kb on + strand, within GFF1744 at 382.038 kb on + strand, within GFF1744 at 382.039 kb on - strand, within GFF1744 at 382.039 kb on - strand, within GFF1744 at 382.039 kb on - strand, within GFF1744 at 382.087 kb on - strand, within GFF1744 at 382.170 kb on + strand, within GFF1744 at 382.170 kb on + strand, within GFF1744 at 382.171 kb on - strand, within GFF1744 at 382.199 kb on - strand, within GFF1744 at 382.230 kb on - strand, within GFF1744 at 382.263 kb on + strand, within GFF1744 at 382.263 kb on + strand, within GFF1744 at 382.264 kb on - strand, within GFF1744 at 382.264 kb on - strand, within GFF1744 at 382.264 kb on - strand, within GFF1744 at 382.280 kb on - strand, within GFF1744 at 382.280 kb on - strand, within GFF1744 at 382.366 kb on - strand, within GFF1744 at 382.383 kb on - strand, within GFF1744 at 382.383 kb on - strand, within GFF1744 at 382.383 kb on - strand, within GFF1744 at 382.383 kb on - strand, within GFF1744 at 382.383 kb on - strand, within GFF1744 at 382.398 kb on + strand, within GFF1744 at 382.486 kb on - strand, within GFF1744 at 382.486 kb on - strand, within GFF1744 at 382.508 kb on + strand, within GFF1744 at 382.516 kb on - strand, within GFF1744 at 382.785 kb on + strand, within GFF1744 at 382.804 kb on - strand, within GFF1744 at 382.948 kb on - strand at 382.948 kb on - strand at 382.948 kb on - strand at 382.964 kb on - strand at 382.964 kb on - strand at 383.003 kb on - strand at 383.013 kb on + strand at 383.058 kb on + strand at 383.059 kb on - strand at 383.059 kb on - strand at 383.071 kb on + strand at 383.085 kb on + strand at 383.970 kb on + strand at 383.977 kb on + strand at 383.977 kb on + strand at 383.978 kb on - strand at 383.978 kb on - strand at 383.994 kb on + strand at 383.995 kb on - strand at 384.022 kb on + strand at 384.022 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 381,422 - -0.3 381,429 - -1.0 381,461 + -1.0 381,461 + +0.3 381,461 + -0.7 381,461 + +0.5 381,462 - -0.5 381,462 - -0.3 381,462 - -0.0 381,498 - +0.5 381,517 - -0.0 381,550 + -2.2 381,550 + +0.5 381,561 - -0.4 381,561 - +0.1 381,563 + +1.4 381,563 + -1.6 381,563 + +0.4 381,564 - -0.9 381,564 - -0.6 381,566 + -0.9 381,566 + -0.8 381,566 + -0.0 381,566 + -0.5 381,566 + +0.8 381,567 - -1.0 381,567 - -0.0 381,567 - -0.3 381,567 - +0.1 381,567 - +0.3 381,575 + -1.5 381,577 + +0.1 381,578 - +0.2 381,595 + -0.5 381,598 + -0.0 381,599 - -0.8 381,599 - -0.0 381,708 + -1.4 381,708 + -1.5 381,708 + +1.1 381,709 - +0.2 381,709 - +0.3 381,709 - +0.2 381,749 + -2.0 381,750 - -0.3 381,750 - -0.6 381,778 + -0.8 381,779 - -2.0 381,794 + -2.0 381,800 + +0.2 381,800 + +1.3 381,800 + -0.6 381,801 - -0.1 381,801 - -0.0 381,801 - -0.6 381,801 - -1.0 381,801 - -1.9 381,801 - +0.3 381,825 + -0.4 381,825 + +0.2 381,846 - -0.6 381,941 + -0.0 381,942 - -1.6 381,942 - -0.0 381,944 + -0.0 381,955 - -1.9 382,013 + GFF1744 0.14 -1.2 382,014 - GFF1744 0.14 +0.2 382,014 - GFF1744 0.14 -0.0 382,038 + GFF1744 0.16 -0.5 382,038 + GFF1744 0.16 -1.0 382,039 - GFF1744 0.16 -1.2 382,039 - GFF1744 0.16 +0.4 382,039 - GFF1744 0.16 -1.3 382,087 - GFF1744 0.20 -1.9 382,170 + GFF1744 0.27 -1.4 382,170 + GFF1744 0.27 -1.4 382,171 - GFF1744 0.27 -1.0 382,199 - GFF1744 0.30 -1.6 382,230 - GFF1744 0.32 -0.0 382,263 + GFF1744 0.35 -1.9 382,263 + GFF1744 0.35 -1.0 382,264 - GFF1744 0.35 -1.0 382,264 - GFF1744 0.35 +0.2 382,264 - GFF1744 0.35 -1.4 382,280 - GFF1744 0.37 -1.4 382,280 - GFF1744 0.37 -2.1 382,366 - GFF1744 0.44 -1.4 382,383 - GFF1744 0.45 -0.0 382,383 - GFF1744 0.45 -0.9 382,383 - GFF1744 0.45 -1.0 382,383 - GFF1744 0.45 -1.0 382,383 - GFF1744 0.45 -1.0 382,398 + GFF1744 0.47 -1.0 382,486 - GFF1744 0.54 -1.4 382,486 - GFF1744 0.54 -0.6 382,508 + GFF1744 0.56 -1.2 382,516 - GFF1744 0.56 -3.1 382,785 + GFF1744 0.79 -0.6 382,804 - GFF1744 0.81 -0.0 382,948 - +0.4 382,948 - -0.3 382,948 - -1.4 382,964 - -0.0 382,964 - -3.0 383,003 - -0.6 383,013 + -0.6 383,058 + +0.2 383,059 - -0.5 383,059 - -1.0 383,071 + -0.0 383,085 + -0.5 383,970 + +1.0 383,977 + -1.0 383,977 + -1.0 383,978 - -0.7 383,978 - -1.0 383,994 + +1.8 383,995 - -1.0 384,022 + -0.2 384,022 + +0.5
Or see this region's nucleotide sequence