Strain Fitness in Methylophilus sp. DMC18 around GFF1693

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1692 and GFF1693 are separated by 94 nucleotidesGFF1693 and GFF1694 are separated by 496 nucleotides GFF1692 - Chaperone protein DnaK, at 327,668 to 329,584 GFF1692 GFF1693 - Chaperone protein DnaJ, at 329,679 to 330,809 GFF1693 GFF1694 - Chromosome partitioning protein ParA, at 331,306 to 332,100 GFF1694 Position (kb) 329 330 331Strain fitness (log2 ratio) -2 -1 0 1at 329.231 kb on + strand, within GFF1692at 329.231 kb on + strand, within GFF1692at 329.231 kb on + strand, within GFF1692at 329.292 kb on + strand, within GFF1692at 329.472 kb on + strandat 329.472 kb on + strandat 329.472 kb on + strandat 329.472 kb on + strandat 329.474 kb on + strandat 329.474 kb on + strandat 329.474 kb on + strandat 329.474 kb on + strandat 329.474 kb on + strandat 329.474 kb on + strandat 329.474 kb on + strandat 329.474 kb on + strandat 329.474 kb on + strandat 329.603 kb on + strandat 329.610 kb on + strandat 329.644 kb on + strandat 329.644 kb on + strandat 329.654 kb on + strandat 329.654 kb on + strandat 330.104 kb on + strand, within GFF1693at 330.158 kb on + strand, within GFF1693at 330.176 kb on + strand, within GFF1693at 330.426 kb on + strand, within GFF1693at 330.426 kb on + strand, within GFF1693at 330.426 kb on + strand, within GFF1693at 330.426 kb on + strand, within GFF1693at 330.426 kb on + strand, within GFF1693at 330.427 kb on - strand, within GFF1693at 330.443 kb on + strand, within GFF1693at 330.443 kb on + strand, within GFF1693at 330.807 kb on + strandat 330.807 kb on + strandat 330.856 kb on + strandat 330.948 kb on + strandat 330.949 kb on - strandat 330.972 kb on + strandat 331.000 kb on - strandat 331.007 kb on + strandat 331.007 kb on + strandat 331.008 kb on - strandat 331.018 kb on + strandat 331.018 kb on + strandat 331.019 kb on - strandat 331.067 kb on + strandat 331.073 kb on + strandat 331.073 kb on + strandat 331.073 kb on + strandat 331.091 kb on + strandat 331.091 kb on + strandat 331.091 kb on + strandat 331.125 kb on + strandat 331.126 kb on - strandat 331.154 kb on + strandat 331.212 kb on + strandat 331.229 kb on - strandat 331.233 kb on + strandat 331.233 kb on + strandat 331.233 kb on + strandat 331.233 kb on + strandat 331.233 kb on + strandat 331.233 kb on + strandat 331.233 kb on + strandat 331.233 kb on + strandat 331.234 kb on - strandat 331.234 kb on - strandat 331.244 kb on + strandat 331.244 kb on + strandat 331.244 kb on + strandat 331.244 kb on + strandat 331.245 kb on - strandat 331.245 kb on - strandat 331.255 kb on + strandat 331.255 kb on + strandat 331.256 kb on - strandat 331.299 kb on + strandat 331.299 kb on + strandat 331.300 kb on - strandat 331.310 kb on + strandat 331.326 kb on + strandat 331.327 kb on - strandat 331.365 kb on - strandat 331.381 kb on + strandat 331.447 kb on + strand, within GFF1694at 331.447 kb on + strand, within GFF1694at 331.447 kb on + strand, within GFF1694at 331.448 kb on - strand, within GFF1694at 331.448 kb on - strand, within GFF1694at 331.532 kb on + strand, within GFF1694at 331.533 kb on - strand, within GFF1694at 331.537 kb on - strand, within GFF1694at 331.537 kb on - strand, within GFF1694at 331.537 kb on - strand, within GFF1694at 331.537 kb on - strand, within GFF1694at 331.554 kb on + strand, within GFF1694at 331.690 kb on + strand, within GFF1694at 331.690 kb on + strand, within GFF1694at 331.690 kb on + strand, within GFF1694at 331.690 kb on + strand, within GFF1694at 331.691 kb on - strand, within GFF1694at 331.691 kb on - strand, within GFF1694at 331.691 kb on - strand, within GFF1694at 331.691 kb on - strand, within GFF1694at 331.709 kb on + strand, within GFF1694at 331.710 kb on - strand, within GFF1694at 331.710 kb on - strand, within GFF1694at 331.739 kb on + strand, within GFF1694at 331.739 kb on + strand, within GFF1694at 331.739 kb on + strand, within GFF1694at 331.740 kb on - strand, within GFF1694at 331.759 kb on + strand, within GFF1694at 331.759 kb on + strand, within GFF1694at 331.759 kb on + strand, within GFF1694

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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329,231 + GFF1692 0.82 +0.5
329,231 + GFF1692 0.82 -1.4
329,231 + GFF1692 0.82 -0.9
329,292 + GFF1692 0.85 -0.0
329,472 + -0.4
329,472 + +0.2
329,472 + -2.2
329,472 + -0.8
329,474 + -0.0
329,474 + -0.0
329,474 + -0.5
329,474 + -0.0
329,474 + -2.0
329,474 + +0.8
329,474 + -0.6
329,474 + +1.0
329,474 + -0.9
329,603 + -1.4
329,610 + +0.7
329,644 + +0.2
329,644 + +0.1
329,654 + -0.0
329,654 + -0.8
330,104 + GFF1693 0.38 -1.0
330,158 + GFF1693 0.42 -1.0
330,176 + GFF1693 0.44 -1.4
330,426 + GFF1693 0.66 -1.8
330,426 + GFF1693 0.66 -1.4
330,426 + GFF1693 0.66 -2.2
330,426 + GFF1693 0.66 +1.3
330,426 + GFF1693 0.66 +0.1
330,427 - GFF1693 0.66 -1.6
330,443 + GFF1693 0.68 -0.6
330,443 + GFF1693 0.68 -0.3
330,807 + -1.0
330,807 + -0.9
330,856 + -0.1
330,948 + -0.6
330,949 - -0.3
330,972 + -0.0
331,000 - -0.4
331,007 + -0.6
331,007 + +1.2
331,008 - +1.0
331,018 + +1.0
331,018 + -1.9
331,019 - -2.0
331,067 + +0.4
331,073 + -0.2
331,073 + -0.9
331,073 + -0.6
331,091 + +0.1
331,091 + -0.3
331,091 + -0.3
331,125 + -1.4
331,126 - -0.5
331,154 + +1.0
331,212 + -1.0
331,229 - -1.0
331,233 + +0.1
331,233 + -0.9
331,233 + +0.1
331,233 + -0.2
331,233 + +1.1
331,233 + -0.0
331,233 + -1.0
331,233 + -1.1
331,234 - +0.4
331,234 - -0.4
331,244 + +1.5
331,244 + -1.3
331,244 + -0.0
331,244 + +0.1
331,245 - -0.2
331,245 - -0.6
331,255 + -2.2
331,255 + -0.3
331,256 - +0.6
331,299 + +1.0
331,299 + -0.0
331,300 - -0.9
331,310 + -0.9
331,326 + +0.8
331,327 - +0.1
331,365 - +0.5
331,381 + +0.2
331,447 + GFF1694 0.18 +0.5
331,447 + GFF1694 0.18 +0.2
331,447 + GFF1694 0.18 -0.1
331,448 - GFF1694 0.18 -0.3
331,448 - GFF1694 0.18 -0.2
331,532 + GFF1694 0.28 -1.4
331,533 - GFF1694 0.29 -0.4
331,537 - GFF1694 0.29 -2.2
331,537 - GFF1694 0.29 -0.4
331,537 - GFF1694 0.29 +0.7
331,537 - GFF1694 0.29 -1.4
331,554 + GFF1694 0.31 +0.6
331,690 + GFF1694 0.48 +0.3
331,690 + GFF1694 0.48 -0.6
331,690 + GFF1694 0.48 -0.3
331,690 + GFF1694 0.48 -1.7
331,691 - GFF1694 0.48 +0.5
331,691 - GFF1694 0.48 +0.6
331,691 - GFF1694 0.48 -0.7
331,691 - GFF1694 0.48 -1.4
331,709 + GFF1694 0.51 +0.6
331,710 - GFF1694 0.51 +0.4
331,710 - GFF1694 0.51 -0.4
331,739 + GFF1694 0.54 -0.6
331,739 + GFF1694 0.54 -0.1
331,739 + GFF1694 0.54 -0.7
331,740 - GFF1694 0.55 -0.3
331,759 + GFF1694 0.57 +0.1
331,759 + GFF1694 0.57 +0.4
331,759 + GFF1694 0.57 -0.0

Or see this region's nucleotide sequence