Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1644 and GFF1645 are separated by 92 nucleotides GFF1645 and GFF1646 overlap by 1 nucleotides GFF1646 and GFF1647 are separated by 79 nucleotides GFF1647 and GFF1648 are separated by 198 nucleotides
GFF1644 - Bifunctional purine biosynthesis protein PurH, at 275,241 to 276,845
GFF1644
GFF1645 - DNA-binding protein Fis, at 276,938 to 277,174
GFF1645
GFF1646 - tRNA-dihydrouridine synthase B, at 277,174 to 278,217
GFF1646
GFF1647 - HTH-type transcriptional regulator TtgR, at 278,297 to 278,923
GFF1647
GFF1648 - Multidrug efflux pump subunit AcrA, at 279,122 to 280,300
GFF1648
Position (kb) 277
278
279 Strain fitness (log2 ratio) -2
-1
0
1
2 at 276.977 kb on - strand, within GFF1645 at 277.038 kb on - strand, within GFF1645 at 277.155 kb on - strand at 277.176 kb on - strand at 277.176 kb on - strand at 277.233 kb on - strand at 277.233 kb on - strand at 277.289 kb on - strand, within GFF1646 at 277.289 kb on - strand, within GFF1646 at 277.295 kb on - strand, within GFF1646 at 277.295 kb on - strand, within GFF1646 at 277.295 kb on - strand, within GFF1646 at 277.295 kb on - strand, within GFF1646 at 277.301 kb on - strand, within GFF1646 at 277.301 kb on - strand, within GFF1646 at 277.301 kb on - strand, within GFF1646 at 277.301 kb on - strand, within GFF1646 at 277.315 kb on - strand, within GFF1646 at 277.315 kb on - strand, within GFF1646 at 277.315 kb on - strand, within GFF1646 at 277.315 kb on - strand, within GFF1646 at 277.315 kb on - strand, within GFF1646 at 277.315 kb on - strand, within GFF1646 at 277.349 kb on - strand, within GFF1646 at 277.349 kb on - strand, within GFF1646 at 277.349 kb on - strand, within GFF1646 at 277.349 kb on - strand, within GFF1646 at 277.360 kb on - strand, within GFF1646 at 277.360 kb on - strand, within GFF1646 at 277.360 kb on - strand, within GFF1646 at 277.360 kb on - strand, within GFF1646 at 277.372 kb on - strand, within GFF1646 at 277.372 kb on - strand, within GFF1646 at 277.410 kb on - strand, within GFF1646 at 277.419 kb on - strand, within GFF1646 at 277.419 kb on - strand, within GFF1646 at 277.419 kb on - strand, within GFF1646 at 277.419 kb on - strand, within GFF1646 at 277.463 kb on - strand, within GFF1646 at 277.575 kb on - strand, within GFF1646 at 277.575 kb on - strand, within GFF1646 at 278.280 kb on + strand at 278.280 kb on + strand at 278.280 kb on + strand at 278.281 kb on - strand at 278.281 kb on - strand at 278.281 kb on - strand at 278.315 kb on - strand at 278.331 kb on - strand at 278.331 kb on - strand at 278.331 kb on - strand at 278.355 kb on - strand at 278.355 kb on - strand at 278.391 kb on - strand, within GFF1647 at 278.438 kb on - strand, within GFF1647 at 278.438 kb on - strand, within GFF1647 at 278.478 kb on + strand, within GFF1647 at 278.510 kb on - strand, within GFF1647 at 278.515 kb on + strand, within GFF1647 at 278.516 kb on - strand, within GFF1647 at 278.516 kb on - strand, within GFF1647 at 278.516 kb on - strand, within GFF1647 at 278.516 kb on - strand, within GFF1647 at 278.516 kb on - strand, within GFF1647 at 278.519 kb on + strand, within GFF1647 at 278.520 kb on - strand, within GFF1647 at 278.520 kb on - strand, within GFF1647 at 278.525 kb on - strand, within GFF1647 at 278.583 kb on + strand, within GFF1647 at 278.584 kb on - strand, within GFF1647 at 278.584 kb on - strand, within GFF1647 at 278.584 kb on - strand, within GFF1647 at 278.584 kb on - strand, within GFF1647 at 278.584 kb on - strand, within GFF1647 at 278.612 kb on - strand, within GFF1647 at 278.622 kb on - strand, within GFF1647 at 278.622 kb on - strand, within GFF1647 at 278.622 kb on - strand, within GFF1647 at 278.622 kb on - strand, within GFF1647 at 278.666 kb on - strand, within GFF1647 at 278.666 kb on - strand, within GFF1647 at 278.712 kb on - strand, within GFF1647 at 278.712 kb on - strand, within GFF1647 at 278.724 kb on + strand, within GFF1647 at 278.724 kb on + strand, within GFF1647 at 278.724 kb on + strand, within GFF1647 at 278.724 kb on + strand, within GFF1647 at 278.725 kb on - strand, within GFF1647 at 278.725 kb on - strand, within GFF1647 at 278.725 kb on - strand, within GFF1647 at 278.778 kb on + strand, within GFF1647 at 278.779 kb on - strand, within GFF1647 at 278.795 kb on - strand, within GFF1647 at 278.875 kb on + strand at 278.875 kb on + strand at 278.914 kb on + strand at 278.914 kb on + strand at 278.915 kb on - strand at 278.915 kb on - strand at 278.915 kb on - strand at 278.915 kb on - strand at 278.915 kb on - strand at 278.918 kb on + strand at 278.918 kb on + strand at 278.919 kb on - strand at 278.923 kb on + strand at 278.923 kb on + strand at 278.923 kb on + strand at 278.923 kb on + strand at 278.923 kb on + strand at 278.923 kb on + strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.924 kb on - strand at 278.927 kb on + strand at 278.927 kb on + strand at 278.927 kb on + strand at 278.927 kb on + strand at 278.927 kb on + strand at 278.927 kb on + strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.928 kb on - strand at 278.931 kb on + strand at 278.931 kb on + strand at 278.932 kb on - strand at 278.944 kb on + strand at 278.944 kb on + strand at 278.945 kb on - strand at 278.974 kb on + strand at 278.974 kb on + strand at 278.975 kb on - strand at 278.980 kb on - strand at 279.041 kb on + strand at 279.042 kb on - strand at 279.059 kb on + strand at 279.060 kb on - strand at 279.060 kb on - strand at 279.062 kb on - strand at 279.062 kb on - strand at 279.064 kb on - strand at 279.064 kb on - strand at 279.067 kb on - strand at 279.082 kb on + strand at 279.082 kb on + strand at 279.086 kb on + strand at 279.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 276,977 - GFF1645 0.16 -1.4 277,038 - GFF1645 0.42 -0.1 277,155 - -1.1 277,176 - -1.1 277,176 - -0.7 277,233 - -1.1 277,233 - -0.7 277,289 - GFF1646 0.11 -1.4 277,289 - GFF1646 0.11 +0.4 277,295 - GFF1646 0.12 -0.1 277,295 - GFF1646 0.12 +0.2 277,295 - GFF1646 0.12 +0.1 277,295 - GFF1646 0.12 -0.5 277,301 - GFF1646 0.12 -1.6 277,301 - GFF1646 0.12 -0.1 277,301 - GFF1646 0.12 -0.5 277,301 - GFF1646 0.12 -1.1 277,315 - GFF1646 0.14 -0.5 277,315 - GFF1646 0.14 -1.4 277,315 - GFF1646 0.14 -0.9 277,315 - GFF1646 0.14 +0.7 277,315 - GFF1646 0.14 -0.4 277,315 - GFF1646 0.14 -0.1 277,349 - GFF1646 0.17 +0.6 277,349 - GFF1646 0.17 -0.6 277,349 - GFF1646 0.17 +0.3 277,349 - GFF1646 0.17 -1.2 277,360 - GFF1646 0.18 -0.5 277,360 - GFF1646 0.18 +0.2 277,360 - GFF1646 0.18 -0.7 277,360 - GFF1646 0.18 -0.8 277,372 - GFF1646 0.19 -1.1 277,372 - GFF1646 0.19 -1.1 277,410 - GFF1646 0.23 -0.4 277,419 - GFF1646 0.23 -0.9 277,419 - GFF1646 0.23 -1.2 277,419 - GFF1646 0.23 -0.1 277,419 - GFF1646 0.23 -1.1 277,463 - GFF1646 0.28 +0.5 277,575 - GFF1646 0.38 -1.6 277,575 - GFF1646 0.38 -1.1 278,280 + -0.5 278,280 + -0.8 278,280 + +0.4 278,281 - +0.6 278,281 - -0.1 278,281 - -0.5 278,315 - +0.1 278,331 - -1.1 278,331 - +0.5 278,331 - -0.4 278,355 - -0.3 278,355 - -0.4 278,391 - GFF1647 0.15 +0.1 278,438 - GFF1647 0.22 -0.6 278,438 - GFF1647 0.22 +1.4 278,478 + GFF1647 0.29 -1.4 278,510 - GFF1647 0.34 +0.2 278,515 + GFF1647 0.35 +0.1 278,516 - GFF1647 0.35 +0.6 278,516 - GFF1647 0.35 +0.9 278,516 - GFF1647 0.35 +0.1 278,516 - GFF1647 0.35 +0.5 278,516 - GFF1647 0.35 -0.1 278,519 + GFF1647 0.35 -0.6 278,520 - GFF1647 0.36 -0.1 278,520 - GFF1647 0.36 +0.7 278,525 - GFF1647 0.36 +0.6 278,583 + GFF1647 0.46 +0.8 278,584 - GFF1647 0.46 +0.2 278,584 - GFF1647 0.46 +1.1 278,584 - GFF1647 0.46 +1.7 278,584 - GFF1647 0.46 +0.9 278,584 - GFF1647 0.46 -0.1 278,612 - GFF1647 0.50 +0.4 278,622 - GFF1647 0.52 +1.5 278,622 - GFF1647 0.52 +0.3 278,622 - GFF1647 0.52 +0.4 278,622 - GFF1647 0.52 -0.6 278,666 - GFF1647 0.59 +0.5 278,666 - GFF1647 0.59 +0.2 278,712 - GFF1647 0.66 -0.2 278,712 - GFF1647 0.66 -0.6 278,724 + GFF1647 0.68 +0.9 278,724 + GFF1647 0.68 +1.4 278,724 + GFF1647 0.68 +0.1 278,724 + GFF1647 0.68 +1.6 278,725 - GFF1647 0.68 +0.9 278,725 - GFF1647 0.68 +1.2 278,725 - GFF1647 0.68 -0.2 278,778 + GFF1647 0.77 -1.9 278,779 - GFF1647 0.77 -0.2 278,795 - GFF1647 0.79 +1.9 278,875 + +0.7 278,875 + -1.1 278,914 + +0.7 278,914 + -0.1 278,915 - +0.2 278,915 - +0.5 278,915 - -0.1 278,915 - -0.4 278,915 - +0.9 278,918 + -1.4 278,918 + +0.4 278,919 - -1.1 278,923 + +0.7 278,923 + +1.3 278,923 + +0.2 278,923 + +1.3 278,923 + +0.9 278,923 + +0.4 278,924 - -0.1 278,924 - -0.1 278,924 - -0.1 278,924 - +1.3 278,924 - +0.4 278,924 - -0.4 278,924 - -0.2 278,924 - +0.4 278,924 - -0.3 278,924 - +0.4 278,927 + +0.3 278,927 + +1.7 278,927 + -1.6 278,927 + +0.2 278,927 + -0.0 278,927 + +0.6 278,928 - +0.7 278,928 - -0.9 278,928 - +0.1 278,928 - +0.9 278,928 - -0.1 278,928 - -0.1 278,928 - +1.5 278,928 - -1.6 278,928 - +0.1 278,928 - -1.2 278,928 - +1.1 278,931 + +0.7 278,931 + +0.9 278,932 - +0.2 278,944 + +0.1 278,944 + -0.4 278,945 - +0.4 278,974 + +1.1 278,974 + +1.5 278,975 - -0.5 278,980 - +0.8 279,041 + +0.1 279,042 - -0.1 279,059 + -2.1 279,060 - +0.1 279,060 - +0.7 279,062 - -0.1 279,062 - -2.2 279,064 - -1.1 279,064 - -0.8 279,067 - +0.3 279,082 + -1.6 279,082 + -0.4 279,086 + -0.1 279,174 + -1.1
Or see this region's nucleotide sequence