Strain Fitness in Methylophilus sp. DMC18 around GFF164

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF163 and GFF164 are separated by 21 nucleotidesGFF164 and GFF165 are separated by 11 nucleotidesGFF165 and GFF166 are separated by 1 nucleotides GFF163 - Cysteine desulfurase NifS, at 159,457 to 160,623 GFF163 GFF164 - hypothetical protein, at 160,645 to 160,851 GFF164 GFF165 - hypothetical protein, at 160,863 to 161,129 GFF165 GFF166 - GDP-perosamine synthase, at 161,131 to 162,312 GFF166 Position (kb) 160 161Strain fitness (log2 ratio) -2 -1 0 1at 160.063 kb on + strand, within GFF163at 160.064 kb on - strand, within GFF163at 160.090 kb on + strand, within GFF163at 160.091 kb on - strand, within GFF163at 160.091 kb on - strand, within GFF163at 160.091 kb on - strand, within GFF163at 160.091 kb on - strand, within GFF163at 160.091 kb on - strand, within GFF163at 160.124 kb on + strand, within GFF163at 160.125 kb on - strand, within GFF163at 160.125 kb on - strand, within GFF163at 160.356 kb on - strand, within GFF163at 160.538 kb on + strandat 160.539 kb on - strandat 160.545 kb on + strandat 160.569 kb on - strandat 160.569 kb on - strandat 160.658 kb on + strandat 160.659 kb on - strandat 160.687 kb on + strand, within GFF164at 160.688 kb on - strand, within GFF164at 160.688 kb on - strand, within GFF164at 160.688 kb on - strand, within GFF164at 160.688 kb on - strand, within GFF164at 160.688 kb on - strand, within GFF164at 160.827 kb on - strand, within GFF164at 160.849 kb on + strandat 160.868 kb on + strandat 160.868 kb on + strandat 160.868 kb on + strandat 160.868 kb on + strandat 160.869 kb on - strandat 160.869 kb on - strandat 161.013 kb on + strand, within GFF165at 161.040 kb on + strand, within GFF165at 161.040 kb on + strand, within GFF165at 161.040 kb on + strand, within GFF165at 161.041 kb on - strand, within GFF165at 161.041 kb on - strand, within GFF165at 161.107 kb on + strandat 161.107 kb on + strandat 161.108 kb on - strandat 161.108 kb on - strandat 161.108 kb on - strandat 161.238 kb on + strandat 161.239 kb on - strandat 161.239 kb on - strandat 161.301 kb on + strand, within GFF166at 161.301 kb on + strand, within GFF166at 161.302 kb on - strand, within GFF166at 161.302 kb on - strand, within GFF166at 161.313 kb on + strand, within GFF166at 161.314 kb on - strand, within GFF166at 161.314 kb on - strand, within GFF166at 161.357 kb on + strand, within GFF166at 161.389 kb on + strand, within GFF166at 161.390 kb on - strand, within GFF166at 161.391 kb on + strand, within GFF166at 161.458 kb on + strand, within GFF166at 161.458 kb on + strand, within GFF166at 161.545 kb on - strand, within GFF166at 161.547 kb on + strand, within GFF166at 161.547 kb on + strand, within GFF166at 161.547 kb on + strand, within GFF166at 161.548 kb on - strand, within GFF166at 161.548 kb on - strand, within GFF166at 161.548 kb on - strand, within GFF166at 161.615 kb on + strand, within GFF166at 161.634 kb on + strand, within GFF166at 161.634 kb on + strand, within GFF166at 161.647 kb on + strand, within GFF166

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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160,063 + GFF163 0.52 +0.1
160,064 - GFF163 0.52 -2.5
160,090 + GFF163 0.54 -0.4
160,091 - GFF163 0.54 -0.5
160,091 - GFF163 0.54 +0.6
160,091 - GFF163 0.54 -0.4
160,091 - GFF163 0.54 +0.2
160,091 - GFF163 0.54 -1.0
160,124 + GFF163 0.57 -0.6
160,125 - GFF163 0.57 -0.5
160,125 - GFF163 0.57 +0.0
160,356 - GFF163 0.77 -0.9
160,538 + +0.1
160,539 - +0.0
160,545 + +0.0
160,569 - -0.7
160,569 - +1.0
160,658 + -0.2
160,659 - -0.6
160,687 + GFF164 0.20 -0.3
160,688 - GFF164 0.21 -2.6
160,688 - GFF164 0.21 -0.6
160,688 - GFF164 0.21 -0.8
160,688 - GFF164 0.21 -2.1
160,688 - GFF164 0.21 -1.8
160,827 - GFF164 0.88 +1.3
160,849 + +0.6
160,868 + +0.0
160,868 + -0.6
160,868 + -0.5
160,868 + -1.2
160,869 - +0.3
160,869 - -1.0
161,013 + GFF165 0.56 -0.3
161,040 + GFF165 0.66 -0.4
161,040 + GFF165 0.66 +1.3
161,040 + GFF165 0.66 -0.6
161,041 - GFF165 0.67 -0.2
161,041 - GFF165 0.67 -0.4
161,107 + -0.8
161,107 + -0.1
161,108 - -0.6
161,108 - +1.0
161,108 - +0.7
161,238 + -0.4
161,239 - -0.5
161,239 - +0.0
161,301 + GFF166 0.14 -0.8
161,301 + GFF166 0.14 -0.7
161,302 - GFF166 0.14 -0.4
161,302 - GFF166 0.14 -1.0
161,313 + GFF166 0.15 +0.3
161,314 - GFF166 0.15 +0.6
161,314 - GFF166 0.15 -0.4
161,357 + GFF166 0.19 -1.5
161,389 + GFF166 0.22 +0.0
161,390 - GFF166 0.22 -0.6
161,391 + GFF166 0.22 +0.0
161,458 + GFF166 0.28 +1.0
161,458 + GFF166 0.28 +0.2
161,545 - GFF166 0.35 -0.8
161,547 + GFF166 0.35 -1.2
161,547 + GFF166 0.35 -0.1
161,547 + GFF166 0.35 -0.4
161,548 - GFF166 0.35 +0.2
161,548 - GFF166 0.35 +0.6
161,548 - GFF166 0.35 +0.0
161,615 + GFF166 0.41 -0.3
161,634 + GFF166 0.43 -0.8
161,634 + GFF166 0.43 -1.0
161,647 + GFF166 0.44 +0.0

Or see this region's nucleotide sequence