Strain Fitness in Methylophilus sp. DMC18 around GFF1639

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1638 and GFF1639 are separated by 204 nucleotidesGFF1639 and GFF1640 are separated by 75 nucleotides GFF1638 - Putative glucose-6-phosphate 1-epimerase, at 268,633 to 269,568 GFF1638 GFF1639 - hypothetical protein, at 269,773 to 270,096 GFF1639 GFF1640 - putative amino acid permease YhdG, at 270,172 to 271,566 GFF1640 Position (kb) 269 270 271Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 268.832 kb on + strand, within GFF1638at 268.855 kb on + strand, within GFF1638at 268.873 kb on - strand, within GFF1638at 269.086 kb on - strand, within GFF1638at 269.088 kb on + strand, within GFF1638at 269.170 kb on + strand, within GFF1638at 269.175 kb on + strand, within GFF1638at 269.189 kb on + strand, within GFF1638at 269.350 kb on + strand, within GFF1638at 269.566 kb on + strandat 269.566 kb on + strandat 269.613 kb on + strandat 269.648 kb on - strandat 269.648 kb on - strandat 269.654 kb on - strandat 269.654 kb on - strandat 269.662 kb on + strandat 269.677 kb on + strandat 269.680 kb on + strandat 269.681 kb on - strandat 269.681 kb on - strandat 269.685 kb on + strandat 269.685 kb on + strandat 269.685 kb on + strandat 269.704 kb on + strandat 269.704 kb on + strandat 269.704 kb on + strandat 269.704 kb on + strandat 269.704 kb on + strandat 269.742 kb on + strandat 269.746 kb on + strandat 269.746 kb on + strandat 269.746 kb on + strandat 269.746 kb on + strandat 269.750 kb on + strandat 269.783 kb on + strandat 269.904 kb on + strand, within GFF1639at 269.904 kb on + strand, within GFF1639at 269.904 kb on + strand, within GFF1639at 269.904 kb on + strand, within GFF1639at 269.904 kb on + strand, within GFF1639at 269.923 kb on + strand, within GFF1639at 269.940 kb on + strand, within GFF1639at 269.970 kb on + strand, within GFF1639at 269.970 kb on + strand, within GFF1639at 270.018 kb on + strand, within GFF1639at 270.147 kb on - strandat 270.200 kb on + strandat 270.200 kb on + strandat 270.209 kb on + strandat 270.209 kb on + strandat 270.210 kb on - strandat 270.321 kb on + strand, within GFF1640at 270.346 kb on + strand, within GFF1640at 270.346 kb on + strand, within GFF1640at 270.393 kb on + strand, within GFF1640at 270.393 kb on + strand, within GFF1640at 270.451 kb on - strand, within GFF1640at 270.493 kb on - strand, within GFF1640at 270.498 kb on + strand, within GFF1640at 270.536 kb on - strand, within GFF1640at 270.572 kb on - strand, within GFF1640at 270.572 kb on - strand, within GFF1640at 270.576 kb on + strand, within GFF1640at 270.577 kb on - strand, within GFF1640at 270.577 kb on - strand, within GFF1640at 270.577 kb on - strand, within GFF1640at 270.577 kb on - strand, within GFF1640at 270.577 kb on - strand, within GFF1640at 270.577 kb on - strand, within GFF1640at 270.590 kb on + strand, within GFF1640at 270.613 kb on - strand, within GFF1640at 270.613 kb on - strand, within GFF1640at 270.660 kb on + strand, within GFF1640at 270.660 kb on + strand, within GFF1640at 270.660 kb on + strand, within GFF1640at 270.660 kb on + strand, within GFF1640at 270.660 kb on + strand, within GFF1640at 270.660 kb on + strand, within GFF1640at 270.660 kb on + strand, within GFF1640at 270.660 kb on + strand, within GFF1640at 270.661 kb on - strand, within GFF1640at 270.661 kb on - strand, within GFF1640at 270.661 kb on - strand, within GFF1640at 270.661 kb on - strand, within GFF1640at 270.661 kb on - strand, within GFF1640at 270.661 kb on - strand, within GFF1640at 270.662 kb on + strand, within GFF1640at 270.663 kb on - strand, within GFF1640at 270.663 kb on - strand, within GFF1640at 270.683 kb on + strand, within GFF1640at 270.683 kb on + strand, within GFF1640at 270.683 kb on + strand, within GFF1640at 270.683 kb on + strand, within GFF1640at 270.684 kb on - strand, within GFF1640at 270.684 kb on - strand, within GFF1640at 270.684 kb on - strand, within GFF1640at 270.703 kb on - strand, within GFF1640at 270.703 kb on - strand, within GFF1640at 270.703 kb on - strand, within GFF1640at 270.703 kb on - strand, within GFF1640at 270.753 kb on + strand, within GFF1640at 270.754 kb on - strand, within GFF1640at 270.755 kb on + strand, within GFF1640at 270.755 kb on + strand, within GFF1640at 270.756 kb on - strand, within GFF1640at 270.756 kb on - strand, within GFF1640at 270.756 kb on - strand, within GFF1640at 270.756 kb on - strand, within GFF1640at 270.756 kb on - strand, within GFF1640at 270.756 kb on - strand, within GFF1640at 270.756 kb on - strand, within GFF1640at 270.759 kb on + strand, within GFF1640at 270.759 kb on + strand, within GFF1640at 270.759 kb on + strand, within GFF1640at 270.759 kb on + strand, within GFF1640at 270.760 kb on - strand, within GFF1640at 270.760 kb on - strand, within GFF1640at 270.760 kb on - strand, within GFF1640at 270.775 kb on + strand, within GFF1640at 270.776 kb on - strand, within GFF1640at 270.799 kb on + strand, within GFF1640at 270.893 kb on - strand, within GFF1640at 270.893 kb on - strand, within GFF1640at 270.901 kb on - strand, within GFF1640at 270.901 kb on - strand, within GFF1640at 270.901 kb on - strand, within GFF1640at 270.942 kb on + strand, within GFF1640at 270.942 kb on + strand, within GFF1640at 270.943 kb on - strand, within GFF1640at 270.969 kb on + strand, within GFF1640at 270.970 kb on - strand, within GFF1640at 271.018 kb on - strand, within GFF1640at 271.070 kb on - strand, within GFF1640at 271.070 kb on - strand, within GFF1640at 271.070 kb on - strand, within GFF1640at 271.090 kb on - strand, within GFF1640at 271.090 kb on - strand, within GFF1640

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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268,832 + GFF1638 0.21 -1.1
268,855 + GFF1638 0.24 -1.1
268,873 - GFF1638 0.26 -0.4
269,086 - GFF1638 0.48 -1.4
269,088 + GFF1638 0.49 -1.1
269,170 + GFF1638 0.57 -1.9
269,175 + GFF1638 0.58 -1.1
269,189 + GFF1638 0.59 -1.1
269,350 + GFF1638 0.77 -2.2
269,566 + -0.6
269,566 + -0.4
269,613 + -1.1
269,648 - -0.2
269,648 - -0.2
269,654 - -0.6
269,654 - -1.6
269,662 + -2.1
269,677 + -0.8
269,680 + -0.6
269,681 - -1.1
269,681 - -1.0
269,685 + -1.1
269,685 + -0.1
269,685 + -1.8
269,704 + -1.4
269,704 + -0.4
269,704 + -0.2
269,704 + -3.4
269,704 + +0.5
269,742 + -1.6
269,746 + -0.1
269,746 + -1.4
269,746 + -0.3
269,746 + -2.4
269,750 + -1.6
269,783 + -0.5
269,904 + GFF1639 0.40 -1.6
269,904 + GFF1639 0.40 -1.4
269,904 + GFF1639 0.40 -1.6
269,904 + GFF1639 0.40 -0.3
269,904 + GFF1639 0.40 -0.1
269,923 + GFF1639 0.46 -1.4
269,940 + GFF1639 0.52 -1.1
269,970 + GFF1639 0.61 -1.3
269,970 + GFF1639 0.61 -1.1
270,018 + GFF1639 0.76 +0.5
270,147 - -0.2
270,200 + +0.4
270,200 + -0.6
270,209 + -1.1
270,209 + -0.3
270,210 - -0.1
270,321 + GFF1640 0.11 -1.2
270,346 + GFF1640 0.12 -0.8
270,346 + GFF1640 0.12 +0.2
270,393 + GFF1640 0.16 -1.1
270,393 + GFF1640 0.16 -0.1
270,451 - GFF1640 0.20 -0.9
270,493 - GFF1640 0.23 -1.4
270,498 + GFF1640 0.23 -0.3
270,536 - GFF1640 0.26 -1.1
270,572 - GFF1640 0.29 -0.2
270,572 - GFF1640 0.29 -1.1
270,576 + GFF1640 0.29 -0.7
270,577 - GFF1640 0.29 -0.4
270,577 - GFF1640 0.29 -0.1
270,577 - GFF1640 0.29 +0.9
270,577 - GFF1640 0.29 -0.6
270,577 - GFF1640 0.29 +0.2
270,577 - GFF1640 0.29 -0.6
270,590 + GFF1640 0.30 -0.7
270,613 - GFF1640 0.32 -0.4
270,613 - GFF1640 0.32 +0.2
270,660 + GFF1640 0.35 -1.4
270,660 + GFF1640 0.35 +1.4
270,660 + GFF1640 0.35 -0.9
270,660 + GFF1640 0.35 -0.4
270,660 + GFF1640 0.35 +0.2
270,660 + GFF1640 0.35 -0.9
270,660 + GFF1640 0.35 -0.1
270,660 + GFF1640 0.35 +0.7
270,661 - GFF1640 0.35 -0.1
270,661 - GFF1640 0.35 -0.3
270,661 - GFF1640 0.35 -0.4
270,661 - GFF1640 0.35 +0.5
270,661 - GFF1640 0.35 -0.4
270,661 - GFF1640 0.35 -0.6
270,662 + GFF1640 0.35 -0.3
270,663 - GFF1640 0.35 -0.9
270,663 - GFF1640 0.35 -0.4
270,683 + GFF1640 0.37 -0.3
270,683 + GFF1640 0.37 +1.2
270,683 + GFF1640 0.37 -0.4
270,683 + GFF1640 0.37 +0.0
270,684 - GFF1640 0.37 -0.7
270,684 - GFF1640 0.37 -0.7
270,684 - GFF1640 0.37 -0.1
270,703 - GFF1640 0.38 -0.1
270,703 - GFF1640 0.38 -1.1
270,703 - GFF1640 0.38 -0.2
270,703 - GFF1640 0.38 -1.4
270,753 + GFF1640 0.42 -0.3
270,754 - GFF1640 0.42 -1.4
270,755 + GFF1640 0.42 +0.2
270,755 + GFF1640 0.42 +0.5
270,756 - GFF1640 0.42 -1.6
270,756 - GFF1640 0.42 +0.5
270,756 - GFF1640 0.42 +0.1
270,756 - GFF1640 0.42 -0.6
270,756 - GFF1640 0.42 +0.6
270,756 - GFF1640 0.42 -0.4
270,756 - GFF1640 0.42 -0.5
270,759 + GFF1640 0.42 +0.3
270,759 + GFF1640 0.42 -1.0
270,759 + GFF1640 0.42 +0.2
270,759 + GFF1640 0.42 -0.5
270,760 - GFF1640 0.42 -0.7
270,760 - GFF1640 0.42 +1.9
270,760 - GFF1640 0.42 -1.5
270,775 + GFF1640 0.43 +0.2
270,776 - GFF1640 0.43 -0.1
270,799 + GFF1640 0.45 +0.2
270,893 - GFF1640 0.52 -1.1
270,893 - GFF1640 0.52 -1.6
270,901 - GFF1640 0.52 -0.4
270,901 - GFF1640 0.52 +0.1
270,901 - GFF1640 0.52 -1.1
270,942 + GFF1640 0.55 -0.9
270,942 + GFF1640 0.55 -0.2
270,943 - GFF1640 0.55 -0.6
270,969 + GFF1640 0.57 +0.5
270,970 - GFF1640 0.57 +0.4
271,018 - GFF1640 0.61 +0.1
271,070 - GFF1640 0.64 -1.6
271,070 - GFF1640 0.64 -0.3
271,070 - GFF1640 0.64 -0.3
271,090 - GFF1640 0.66 -0.5
271,090 - GFF1640 0.66 -1.4

Or see this region's nucleotide sequence