Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1637 and GFF1638 overlap by 1 nucleotides GFF1638 and GFF1639 are separated by 204 nucleotides GFF1639 and GFF1640 are separated by 75 nucleotides
GFF1637 - Dihydroxy-acid dehydratase, at 266,819 to 268,633
GFF1637
GFF1638 - Putative glucose-6-phosphate 1-epimerase, at 268,633 to 269,568
GFF1638
GFF1639 - hypothetical protein, at 269,773 to 270,096
GFF1639
GFF1640 - putative amino acid permease YhdG, at 270,172 to 271,566
GFF1640
Position (kb) 268
269
270 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 268.647 kb on + strand at 268.647 kb on + strand at 268.735 kb on + strand, within GFF1638 at 268.832 kb on + strand, within GFF1638 at 268.855 kb on + strand, within GFF1638 at 268.873 kb on - strand, within GFF1638 at 269.086 kb on - strand, within GFF1638 at 269.088 kb on + strand, within GFF1638 at 269.170 kb on + strand, within GFF1638 at 269.175 kb on + strand, within GFF1638 at 269.189 kb on + strand, within GFF1638 at 269.350 kb on + strand, within GFF1638 at 269.566 kb on + strand at 269.566 kb on + strand at 269.613 kb on + strand at 269.648 kb on - strand at 269.648 kb on - strand at 269.654 kb on - strand at 269.654 kb on - strand at 269.662 kb on + strand at 269.677 kb on + strand at 269.680 kb on + strand at 269.681 kb on - strand at 269.681 kb on - strand at 269.685 kb on + strand at 269.685 kb on + strand at 269.685 kb on + strand at 269.704 kb on + strand at 269.704 kb on + strand at 269.704 kb on + strand at 269.704 kb on + strand at 269.704 kb on + strand at 269.742 kb on + strand at 269.746 kb on + strand at 269.746 kb on + strand at 269.746 kb on + strand at 269.746 kb on + strand at 269.750 kb on + strand at 269.783 kb on + strand at 269.904 kb on + strand, within GFF1639 at 269.904 kb on + strand, within GFF1639 at 269.904 kb on + strand, within GFF1639 at 269.904 kb on + strand, within GFF1639 at 269.904 kb on + strand, within GFF1639 at 269.923 kb on + strand, within GFF1639 at 269.940 kb on + strand, within GFF1639 at 269.970 kb on + strand, within GFF1639 at 269.970 kb on + strand, within GFF1639 at 270.018 kb on + strand, within GFF1639 at 270.147 kb on - strand at 270.200 kb on + strand at 270.200 kb on + strand at 270.209 kb on + strand at 270.209 kb on + strand at 270.210 kb on - strand at 270.321 kb on + strand, within GFF1640 at 270.346 kb on + strand, within GFF1640 at 270.346 kb on + strand, within GFF1640 at 270.393 kb on + strand, within GFF1640 at 270.393 kb on + strand, within GFF1640 at 270.451 kb on - strand, within GFF1640 at 270.493 kb on - strand, within GFF1640 at 270.498 kb on + strand, within GFF1640 at 270.536 kb on - strand, within GFF1640
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 268,647 + -0.6 268,647 + -1.4 268,735 + GFF1638 0.11 -1.4 268,832 + GFF1638 0.21 -1.1 268,855 + GFF1638 0.24 -1.1 268,873 - GFF1638 0.26 -0.4 269,086 - GFF1638 0.48 -1.4 269,088 + GFF1638 0.49 -1.1 269,170 + GFF1638 0.57 -1.9 269,175 + GFF1638 0.58 -1.1 269,189 + GFF1638 0.59 -1.1 269,350 + GFF1638 0.77 -2.2 269,566 + -0.6 269,566 + -0.4 269,613 + -1.1 269,648 - -0.2 269,648 - -0.2 269,654 - -0.6 269,654 - -1.6 269,662 + -2.1 269,677 + -0.8 269,680 + -0.6 269,681 - -1.1 269,681 - -1.0 269,685 + -1.1 269,685 + -0.1 269,685 + -1.8 269,704 + -1.4 269,704 + -0.4 269,704 + -0.2 269,704 + -3.4 269,704 + +0.5 269,742 + -1.6 269,746 + -0.1 269,746 + -1.4 269,746 + -0.3 269,746 + -2.4 269,750 + -1.6 269,783 + -0.5 269,904 + GFF1639 0.40 -1.6 269,904 + GFF1639 0.40 -1.4 269,904 + GFF1639 0.40 -1.6 269,904 + GFF1639 0.40 -0.3 269,904 + GFF1639 0.40 -0.1 269,923 + GFF1639 0.46 -1.4 269,940 + GFF1639 0.52 -1.1 269,970 + GFF1639 0.61 -1.3 269,970 + GFF1639 0.61 -1.1 270,018 + GFF1639 0.76 +0.5 270,147 - -0.2 270,200 + +0.4 270,200 + -0.6 270,209 + -1.1 270,209 + -0.3 270,210 - -0.1 270,321 + GFF1640 0.11 -1.2 270,346 + GFF1640 0.12 -0.8 270,346 + GFF1640 0.12 +0.2 270,393 + GFF1640 0.16 -1.1 270,393 + GFF1640 0.16 -0.1 270,451 - GFF1640 0.20 -0.9 270,493 - GFF1640 0.23 -1.4 270,498 + GFF1640 0.23 -0.3 270,536 - GFF1640 0.26 -1.1
Or see this region's nucleotide sequence