Strain Fitness in Methylophilus sp. DMC18 around GFF1626

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1625 and GFF1626 are separated by 68 nucleotidesGFF1626 and GFF1627 are separated by 31 nucleotidesGFF1627 and GFF1628 are separated by 95 nucleotidesGFF1628 and GFF1629 are separated by 124 nucleotides GFF1625 - hypothetical protein, at 255,929 to 257,221 GFF1625 GFF1626 - 50S ribosomal protein L33, at 257,290 to 257,445 GFF1626 GFF1627 - 50S ribosomal protein L28, at 257,477 to 257,713 GFF1627 GFF1628 - Deoxyuridine 5'-triphosphate nucleotidohydrolase, at 257,809 to 258,261 GFF1628 GFF1629 - Vitamin B12 transporter BtuB, at 258,386 to 260,566 GFF1629 Position (kb) 257 258Strain fitness (log2 ratio) -2 -1 0 1at 256.345 kb on + strand, within GFF1625at 256.346 kb on - strand, within GFF1625at 256.459 kb on + strand, within GFF1625at 256.459 kb on + strand, within GFF1625at 256.492 kb on + strand, within GFF1625at 256.522 kb on + strand, within GFF1625at 256.523 kb on - strand, within GFF1625at 256.546 kb on + strand, within GFF1625at 256.614 kb on + strand, within GFF1625at 256.614 kb on + strand, within GFF1625at 256.614 kb on + strand, within GFF1625at 256.614 kb on + strand, within GFF1625at 256.614 kb on + strand, within GFF1625at 256.614 kb on + strand, within GFF1625at 256.614 kb on + strand, within GFF1625at 256.614 kb on + strand, within GFF1625at 256.614 kb on + strand, within GFF1625at 256.614 kb on + strand, within GFF1625at 256.615 kb on - strand, within GFF1625at 256.615 kb on - strand, within GFF1625at 256.674 kb on + strand, within GFF1625at 256.690 kb on + strand, within GFF1625at 256.694 kb on + strand, within GFF1625at 256.694 kb on + strand, within GFF1625at 256.695 kb on - strand, within GFF1625at 256.695 kb on - strand, within GFF1625at 256.695 kb on - strand, within GFF1625at 256.695 kb on - strand, within GFF1625at 256.723 kb on + strand, within GFF1625at 256.723 kb on + strand, within GFF1625at 256.723 kb on + strand, within GFF1625at 256.724 kb on - strand, within GFF1625at 256.751 kb on - strand, within GFF1625at 256.771 kb on + strand, within GFF1625at 256.771 kb on + strand, within GFF1625at 256.771 kb on + strand, within GFF1625at 256.772 kb on - strand, within GFF1625at 256.772 kb on - strand, within GFF1625at 256.796 kb on + strand, within GFF1625at 256.797 kb on - strand, within GFF1625at 256.855 kb on + strand, within GFF1625at 256.866 kb on + strand, within GFF1625at 256.876 kb on + strand, within GFF1625at 256.876 kb on + strand, within GFF1625at 256.876 kb on + strand, within GFF1625at 256.876 kb on + strand, within GFF1625at 256.876 kb on + strand, within GFF1625at 256.877 kb on - strand, within GFF1625at 256.877 kb on - strand, within GFF1625at 256.887 kb on + strand, within GFF1625at 256.887 kb on + strand, within GFF1625at 256.887 kb on + strand, within GFF1625at 256.887 kb on + strand, within GFF1625at 256.887 kb on + strand, within GFF1625at 256.887 kb on + strand, within GFF1625at 256.888 kb on - strand, within GFF1625at 256.888 kb on - strand, within GFF1625at 256.888 kb on - strand, within GFF1625at 256.888 kb on - strand, within GFF1625at 256.891 kb on + strand, within GFF1625at 256.891 kb on + strand, within GFF1625at 256.891 kb on + strand, within GFF1625at 256.891 kb on + strand, within GFF1625at 256.891 kb on + strand, within GFF1625at 256.891 kb on + strand, within GFF1625at 256.891 kb on + strand, within GFF1625at 256.891 kb on + strand, within GFF1625at 256.891 kb on + strand, within GFF1625at 256.892 kb on - strand, within GFF1625at 256.892 kb on - strand, within GFF1625at 256.892 kb on - strand, within GFF1625at 256.892 kb on - strand, within GFF1625at 256.892 kb on - strand, within GFF1625at 256.906 kb on + strand, within GFF1625at 256.906 kb on + strand, within GFF1625at 256.906 kb on + strand, within GFF1625at 256.906 kb on + strand, within GFF1625at 256.906 kb on + strand, within GFF1625at 256.906 kb on + strand, within GFF1625at 256.906 kb on + strand, within GFF1625at 256.907 kb on - strand, within GFF1625at 256.907 kb on - strand, within GFF1625at 256.907 kb on - strand, within GFF1625at 256.912 kb on + strand, within GFF1625at 256.925 kb on + strand, within GFF1625at 256.926 kb on - strand, within GFF1625at 256.926 kb on - strand, within GFF1625at 256.950 kb on + strand, within GFF1625at 256.950 kb on + strand, within GFF1625at 256.950 kb on + strand, within GFF1625at 256.950 kb on + strand, within GFF1625at 256.951 kb on - strand, within GFF1625at 256.956 kb on + strand, within GFF1625at 256.959 kb on + strand, within GFF1625at 256.992 kb on + strand, within GFF1625at 256.992 kb on + strand, within GFF1625at 257.002 kb on + strand, within GFF1625at 257.003 kb on - strand, within GFF1625at 257.010 kb on + strand, within GFF1625at 257.011 kb on - strand, within GFF1625at 257.052 kb on + strand, within GFF1625at 257.052 kb on + strand, within GFF1625at 257.052 kb on + strand, within GFF1625at 257.052 kb on + strand, within GFF1625at 257.052 kb on + strand, within GFF1625at 257.053 kb on - strand, within GFF1625at 257.053 kb on - strand, within GFF1625at 257.053 kb on - strand, within GFF1625at 257.055 kb on + strand, within GFF1625at 257.100 kb on + strandat 257.114 kb on + strandat 257.114 kb on + strandat 257.114 kb on + strandat 257.114 kb on + strandat 257.114 kb on + strandat 257.114 kb on + strandat 257.115 kb on - strandat 257.115 kb on - strandat 257.115 kb on - strandat 257.115 kb on - strandat 257.117 kb on + strandat 257.118 kb on - strandat 257.118 kb on - strandat 257.137 kb on + strandat 257.137 kb on + strandat 257.138 kb on - strandat 257.138 kb on - strandat 257.146 kb on + strandat 257.146 kb on + strandat 257.147 kb on - strandat 257.147 kb on - strandat 257.147 kb on - strandat 257.149 kb on + strandat 257.150 kb on - strandat 257.182 kb on + strandat 257.185 kb on + strandat 257.186 kb on - strandat 257.186 kb on - strandat 257.219 kb on + strandat 257.219 kb on + strandat 257.224 kb on + strandat 257.224 kb on + strandat 257.240 kb on + strandat 257.254 kb on + strandat 257.255 kb on - strandat 257.255 kb on - strandat 257.269 kb on - strandat 257.286 kb on - strandat 257.313 kb on - strand, within GFF1626at 257.313 kb on - strand, within GFF1626at 257.374 kb on - strand, within GFF1626at 257.397 kb on - strand, within GFF1626at 257.466 kb on - strandat 257.789 kb on + strandat 257.789 kb on + strandat 257.807 kb on - strandat 257.807 kb on - strandat 257.807 kb on - strandat 257.807 kb on - strandat 257.810 kb on + strandat 257.811 kb on - strandat 257.811 kb on - strandat 257.860 kb on - strand, within GFF1628at 257.860 kb on - strand, within GFF1628at 257.894 kb on - strand, within GFF1628at 257.941 kb on - strand, within GFF1628at 257.991 kb on - strand, within GFF1628at 258.010 kb on + strand, within GFF1628at 258.011 kb on - strand, within GFF1628at 258.013 kb on + strand, within GFF1628at 258.014 kb on - strand, within GFF1628at 258.078 kb on - strand, within GFF1628at 258.081 kb on - strand, within GFF1628at 258.088 kb on - strand, within GFF1628at 258.139 kb on + strand, within GFF1628at 258.140 kb on - strand, within GFF1628at 258.140 kb on - strand, within GFF1628at 258.140 kb on - strand, within GFF1628at 258.150 kb on + strand, within GFF1628at 258.151 kb on - strand, within GFF1628at 258.160 kb on - strand, within GFF1628at 258.170 kb on - strand, within GFF1628at 258.170 kb on - strand, within GFF1628at 258.213 kb on + strand, within GFF1628at 258.214 kb on - strand, within GFF1628at 258.214 kb on - strand, within GFF1628at 258.247 kb on + strandat 258.334 kb on + strandat 258.335 kb on - strandat 258.396 kb on + strandat 258.396 kb on + strandat 258.420 kb on + strandat 258.420 kb on + strandat 258.421 kb on - strandat 258.421 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
256,345 + GFF1625 0.32 -0.4
256,346 - GFF1625 0.32 -1.1
256,459 + GFF1625 0.41 -0.5
256,459 + GFF1625 0.41 -0.2
256,492 + GFF1625 0.44 +0.4
256,522 + GFF1625 0.46 -0.6
256,523 - GFF1625 0.46 -0.6
256,546 + GFF1625 0.48 -0.3
256,614 + GFF1625 0.53 +1.3
256,614 + GFF1625 0.53 +0.2
256,614 + GFF1625 0.53 +0.1
256,614 + GFF1625 0.53 +0.1
256,614 + GFF1625 0.53 -1.1
256,614 + GFF1625 0.53 -0.3
256,614 + GFF1625 0.53 -1.1
256,614 + GFF1625 0.53 -0.7
256,614 + GFF1625 0.53 -0.5
256,614 + GFF1625 0.53 -0.1
256,615 - GFF1625 0.53 +1.3
256,615 - GFF1625 0.53 -1.1
256,674 + GFF1625 0.58 +0.3
256,690 + GFF1625 0.59 -2.6
256,694 + GFF1625 0.59 -0.7
256,694 + GFF1625 0.59 -0.3
256,695 - GFF1625 0.59 -0.1
256,695 - GFF1625 0.59 -1.1
256,695 - GFF1625 0.59 +0.6
256,695 - GFF1625 0.59 -1.9
256,723 + GFF1625 0.61 +0.9
256,723 + GFF1625 0.61 +0.5
256,723 + GFF1625 0.61 -0.5
256,724 - GFF1625 0.61 -0.1
256,751 - GFF1625 0.64 -1.1
256,771 + GFF1625 0.65 -0.1
256,771 + GFF1625 0.65 -0.2
256,771 + GFF1625 0.65 -0.4
256,772 - GFF1625 0.65 +0.2
256,772 - GFF1625 0.65 -1.1
256,796 + GFF1625 0.67 -0.6
256,797 - GFF1625 0.67 -0.5
256,855 + GFF1625 0.72 -0.5
256,866 + GFF1625 0.72 +1.0
256,876 + GFF1625 0.73 +0.4
256,876 + GFF1625 0.73 -1.4
256,876 + GFF1625 0.73 +0.6
256,876 + GFF1625 0.73 -0.6
256,876 + GFF1625 0.73 -0.4
256,877 - GFF1625 0.73 -1.1
256,877 - GFF1625 0.73 -0.3
256,887 + GFF1625 0.74 +0.0
256,887 + GFF1625 0.74 -1.1
256,887 + GFF1625 0.74 +0.4
256,887 + GFF1625 0.74 +0.2
256,887 + GFF1625 0.74 +0.5
256,887 + GFF1625 0.74 -0.5
256,888 - GFF1625 0.74 -1.1
256,888 - GFF1625 0.74 -1.1
256,888 - GFF1625 0.74 +0.8
256,888 - GFF1625 0.74 -1.4
256,891 + GFF1625 0.74 +0.2
256,891 + GFF1625 0.74 -2.1
256,891 + GFF1625 0.74 -1.4
256,891 + GFF1625 0.74 -1.4
256,891 + GFF1625 0.74 -0.4
256,891 + GFF1625 0.74 +0.2
256,891 + GFF1625 0.74 +0.2
256,891 + GFF1625 0.74 -0.7
256,891 + GFF1625 0.74 -0.5
256,892 - GFF1625 0.74 -1.9
256,892 - GFF1625 0.74 -0.0
256,892 - GFF1625 0.74 -0.5
256,892 - GFF1625 0.74 +0.9
256,892 - GFF1625 0.74 -1.1
256,906 + GFF1625 0.76 -0.7
256,906 + GFF1625 0.76 -1.6
256,906 + GFF1625 0.76 -1.1
256,906 + GFF1625 0.76 -0.9
256,906 + GFF1625 0.76 +0.2
256,906 + GFF1625 0.76 +0.5
256,906 + GFF1625 0.76 -0.5
256,907 - GFF1625 0.76 -0.1
256,907 - GFF1625 0.76 -1.0
256,907 - GFF1625 0.76 -1.1
256,912 + GFF1625 0.76 -1.4
256,925 + GFF1625 0.77 -1.1
256,926 - GFF1625 0.77 -0.3
256,926 - GFF1625 0.77 +0.9
256,950 + GFF1625 0.79 +0.4
256,950 + GFF1625 0.79 -1.2
256,950 + GFF1625 0.79 +0.3
256,950 + GFF1625 0.79 -0.3
256,951 - GFF1625 0.79 -0.1
256,956 + GFF1625 0.79 +0.2
256,959 + GFF1625 0.80 -1.4
256,992 + GFF1625 0.82 -0.6
256,992 + GFF1625 0.82 -0.3
257,002 + GFF1625 0.83 +0.6
257,003 - GFF1625 0.83 -0.6
257,010 + GFF1625 0.84 +0.7
257,011 - GFF1625 0.84 -2.2
257,052 + GFF1625 0.87 -1.8
257,052 + GFF1625 0.87 +0.3
257,052 + GFF1625 0.87 +0.9
257,052 + GFF1625 0.87 +0.4
257,052 + GFF1625 0.87 +0.1
257,053 - GFF1625 0.87 -1.6
257,053 - GFF1625 0.87 +0.5
257,053 - GFF1625 0.87 -2.1
257,055 + GFF1625 0.87 +0.9
257,100 + +0.0
257,114 + -1.4
257,114 + -0.8
257,114 + -0.4
257,114 + -0.2
257,114 + -0.8
257,114 + -0.3
257,115 - +0.4
257,115 - -0.4
257,115 - -0.4
257,115 - -1.8
257,117 + -0.1
257,118 - +0.0
257,118 - +0.5
257,137 + +0.5
257,137 + -1.1
257,138 - +0.9
257,138 - +0.8
257,146 + +0.4
257,146 + -0.6
257,147 - +0.9
257,147 - -0.2
257,147 - -0.1
257,149 + -0.2
257,150 - +0.1
257,182 + -1.2
257,185 + -0.8
257,186 - -0.1
257,186 - +0.1
257,219 + -0.4
257,219 + +0.6
257,224 + +0.5
257,224 + -0.3
257,240 + -0.1
257,254 + -0.1
257,255 - +0.5
257,255 - -0.6
257,269 - -0.4
257,286 - -0.1
257,313 - GFF1626 0.15 -1.1
257,313 - GFF1626 0.15 -1.6
257,374 - GFF1626 0.54 -0.2
257,397 - GFF1626 0.69 -0.6
257,466 - -0.5
257,789 + +0.2
257,789 + -1.1
257,807 - -1.2
257,807 - -2.6
257,807 - -0.5
257,807 - +0.5
257,810 + -2.2
257,811 - -0.4
257,811 - -0.8
257,860 - GFF1628 0.11 -1.1
257,860 - GFF1628 0.11 -0.8
257,894 - GFF1628 0.19 -0.5
257,941 - GFF1628 0.29 -1.9
257,991 - GFF1628 0.40 -2.4
258,010 + GFF1628 0.44 -1.9
258,011 - GFF1628 0.45 -0.1
258,013 + GFF1628 0.45 -0.6
258,014 - GFF1628 0.45 -1.1
258,078 - GFF1628 0.59 -1.2
258,081 - GFF1628 0.60 -1.6
258,088 - GFF1628 0.62 -0.1
258,139 + GFF1628 0.73 -0.9
258,140 - GFF1628 0.73 -1.1
258,140 - GFF1628 0.73 -0.3
258,140 - GFF1628 0.73 -1.1
258,150 + GFF1628 0.75 -1.4
258,151 - GFF1628 0.75 -2.1
258,160 - GFF1628 0.77 -1.1
258,170 - GFF1628 0.80 -1.1
258,170 - GFF1628 0.80 -1.6
258,213 + GFF1628 0.89 -1.4
258,214 - GFF1628 0.89 -0.1
258,214 - GFF1628 0.89 -0.6
258,247 + -1.4
258,334 + -0.3
258,335 - -0.1
258,396 + +0.5
258,396 + -0.5
258,420 + +0.8
258,420 + +0.2
258,421 - -0.9
258,421 - +0.4

Or see this region's nucleotide sequence