Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1541 and GFF1542 are separated by 68 nucleotides GFF1542 and GFF1543 are separated by 7 nucleotides GFF1543 and GFF1544 are separated by 40 nucleotides
GFF1541 - tRNA-cytidine(32) 2-sulfurtransferase, at 189,123 to 190,064
GFF1541
GFF1542 - hypothetical protein, at 190,133 to 190,453
GFF1542
GFF1543 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 190,461 to 191,213
GFF1543
GFF1544 - hypothetical protein, at 191,254 to 192,423
GFF1544
Position (kb) 190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 189.173 kb on + strand at 189.174 kb on - strand at 189.289 kb on + strand, within GFF1541 at 189.289 kb on + strand, within GFF1541 at 189.289 kb on + strand, within GFF1541 at 189.290 kb on - strand, within GFF1541 at 189.290 kb on - strand, within GFF1541 at 189.290 kb on - strand, within GFF1541 at 189.290 kb on - strand, within GFF1541 at 189.290 kb on - strand, within GFF1541 at 189.327 kb on - strand, within GFF1541 at 189.344 kb on + strand, within GFF1541 at 189.345 kb on - strand, within GFF1541 at 189.384 kb on - strand, within GFF1541 at 189.473 kb on - strand, within GFF1541 at 189.499 kb on + strand, within GFF1541 at 189.500 kb on - strand, within GFF1541 at 189.500 kb on - strand, within GFF1541 at 189.500 kb on - strand, within GFF1541 at 189.500 kb on - strand, within GFF1541 at 189.500 kb on - strand, within GFF1541 at 189.500 kb on - strand, within GFF1541 at 189.500 kb on - strand, within GFF1541 at 189.578 kb on - strand, within GFF1541 at 189.588 kb on + strand, within GFF1541 at 189.588 kb on + strand, within GFF1541 at 189.589 kb on - strand, within GFF1541 at 189.589 kb on - strand, within GFF1541 at 189.589 kb on - strand, within GFF1541 at 189.642 kb on - strand, within GFF1541 at 189.667 kb on + strand, within GFF1541 at 189.668 kb on - strand, within GFF1541 at 189.668 kb on - strand, within GFF1541 at 189.671 kb on + strand, within GFF1541 at 189.672 kb on - strand, within GFF1541 at 189.672 kb on - strand, within GFF1541 at 189.672 kb on - strand, within GFF1541 at 189.714 kb on - strand, within GFF1541 at 189.714 kb on - strand, within GFF1541 at 189.745 kb on + strand, within GFF1541 at 189.746 kb on - strand, within GFF1541 at 189.770 kb on - strand, within GFF1541 at 189.770 kb on - strand, within GFF1541 at 189.793 kb on + strand, within GFF1541 at 189.793 kb on + strand, within GFF1541 at 189.794 kb on - strand, within GFF1541 at 189.970 kb on + strand at 189.970 kb on + strand at 189.971 kb on - strand at 189.971 kb on - strand at 189.971 kb on - strand at 189.971 kb on - strand at 189.999 kb on - strand at 189.999 kb on - strand at 190.048 kb on + strand at 190.049 kb on - strand at 190.064 kb on + strand at 190.076 kb on - strand at 190.077 kb on + strand at 190.077 kb on + strand at 190.094 kb on + strand at 190.103 kb on + strand at 190.104 kb on - strand at 190.144 kb on + strand at 190.166 kb on - strand, within GFF1542 at 190.166 kb on - strand, within GFF1542 at 190.166 kb on - strand, within GFF1542 at 190.166 kb on - strand, within GFF1542 at 190.190 kb on + strand, within GFF1542 at 190.232 kb on + strand, within GFF1542 at 190.232 kb on + strand, within GFF1542 at 190.233 kb on - strand, within GFF1542 at 190.270 kb on - strand, within GFF1542 at 190.382 kb on - strand, within GFF1542 at 190.444 kb on + strand at 190.445 kb on - strand at 190.457 kb on + strand at 190.462 kb on + strand at 190.462 kb on + strand at 190.462 kb on + strand at 190.462 kb on + strand at 190.463 kb on - strand at 190.463 kb on - strand at 190.463 kb on - strand at 190.463 kb on - strand at 190.467 kb on - strand at 190.467 kb on - strand at 190.470 kb on + strand at 190.470 kb on + strand at 190.470 kb on + strand at 190.471 kb on - strand at 190.471 kb on - strand at 190.471 kb on - strand at 190.471 kb on - strand at 190.471 kb on - strand at 190.471 kb on - strand at 190.525 kb on + strand at 190.526 kb on - strand at 190.526 kb on - strand at 190.677 kb on + strand, within GFF1543 at 190.677 kb on + strand, within GFF1543 at 190.678 kb on - strand, within GFF1543 at 190.744 kb on + strand, within GFF1543 at 190.744 kb on + strand, within GFF1543 at 190.744 kb on + strand, within GFF1543 at 190.745 kb on - strand, within GFF1543 at 190.745 kb on - strand, within GFF1543 at 190.745 kb on - strand, within GFF1543 at 190.745 kb on - strand, within GFF1543 at 190.745 kb on - strand, within GFF1543 at 190.753 kb on + strand, within GFF1543 at 190.753 kb on + strand, within GFF1543 at 190.753 kb on + strand, within GFF1543 at 190.753 kb on + strand, within GFF1543 at 190.753 kb on + strand, within GFF1543 at 190.753 kb on + strand, within GFF1543 at 190.753 kb on + strand, within GFF1543 at 190.754 kb on - strand, within GFF1543 at 190.754 kb on - strand, within GFF1543 at 190.754 kb on - strand, within GFF1543 at 190.754 kb on - strand, within GFF1543 at 190.773 kb on + strand, within GFF1543 at 190.774 kb on - strand, within GFF1543 at 190.774 kb on - strand, within GFF1543 at 190.774 kb on - strand, within GFF1543 at 190.774 kb on - strand, within GFF1543 at 190.859 kb on + strand, within GFF1543 at 190.859 kb on + strand, within GFF1543 at 190.860 kb on - strand, within GFF1543 at 190.860 kb on - strand, within GFF1543 at 190.860 kb on - strand, within GFF1543 at 190.921 kb on + strand, within GFF1543 at 190.922 kb on - strand, within GFF1543 at 190.922 kb on - strand, within GFF1543 at 190.922 kb on - strand, within GFF1543 at 190.924 kb on + strand, within GFF1543 at 190.924 kb on + strand, within GFF1543 at 190.925 kb on - strand, within GFF1543 at 191.034 kb on + strand, within GFF1543 at 191.034 kb on + strand, within GFF1543 at 191.035 kb on - strand, within GFF1543 at 191.035 kb on - strand, within GFF1543 at 191.035 kb on - strand, within GFF1543 at 191.178 kb on - strand at 191.184 kb on + strand at 191.192 kb on + strand at 191.192 kb on + strand at 191.192 kb on + strand at 191.192 kb on + strand at 191.198 kb on + strand at 191.199 kb on - strand at 191.218 kb on + strand at 191.218 kb on + strand at 191.218 kb on + strand at 191.219 kb on - strand at 191.219 kb on - strand at 191.219 kb on - strand at 191.219 kb on - strand at 191.219 kb on - strand at 191.229 kb on - strand at 191.242 kb on + strand at 191.242 kb on + strand at 191.242 kb on + strand at 191.242 kb on + strand at 191.242 kb on + strand at 191.242 kb on + strand at 191.243 kb on - strand at 191.243 kb on - strand at 191.243 kb on - strand at 191.243 kb on - strand at 191.243 kb on - strand at 191.244 kb on + strand at 191.244 kb on + strand at 191.245 kb on - strand at 191.245 kb on - strand at 191.245 kb on - strand at 191.245 kb on - strand at 191.401 kb on + strand, within GFF1544 at 191.440 kb on - strand, within GFF1544 at 191.451 kb on - strand, within GFF1544
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 189,173 + -1.1 189,174 - -0.9 189,289 + GFF1541 0.18 +0.7 189,289 + GFF1541 0.18 -0.1 189,289 + GFF1541 0.18 -0.6 189,290 - GFF1541 0.18 -0.4 189,290 - GFF1541 0.18 -1.4 189,290 - GFF1541 0.18 +0.5 189,290 - GFF1541 0.18 -0.1 189,290 - GFF1541 0.18 -0.1 189,327 - GFF1541 0.22 -2.5 189,344 + GFF1541 0.23 -1.4 189,345 - GFF1541 0.24 -0.3 189,384 - GFF1541 0.28 -0.3 189,473 - GFF1541 0.37 -1.9 189,499 + GFF1541 0.40 -1.4 189,500 - GFF1541 0.40 -0.6 189,500 - GFF1541 0.40 -0.1 189,500 - GFF1541 0.40 -1.1 189,500 - GFF1541 0.40 -0.6 189,500 - GFF1541 0.40 +1.5 189,500 - GFF1541 0.40 -2.4 189,500 - GFF1541 0.40 -0.1 189,578 - GFF1541 0.48 +0.7 189,588 + GFF1541 0.49 +0.4 189,588 + GFF1541 0.49 +0.2 189,589 - GFF1541 0.49 -0.4 189,589 - GFF1541 0.49 -0.3 189,589 - GFF1541 0.49 +0.1 189,642 - GFF1541 0.55 -2.1 189,667 + GFF1541 0.58 -0.3 189,668 - GFF1541 0.58 -0.1 189,668 - GFF1541 0.58 +0.6 189,671 + GFF1541 0.58 -1.4 189,672 - GFF1541 0.58 +0.9 189,672 - GFF1541 0.58 -1.6 189,672 - GFF1541 0.58 +0.7 189,714 - GFF1541 0.63 -0.3 189,714 - GFF1541 0.63 +0.6 189,745 + GFF1541 0.66 -0.5 189,746 - GFF1541 0.66 -1.1 189,770 - GFF1541 0.69 -0.5 189,770 - GFF1541 0.69 -0.1 189,793 + GFF1541 0.71 +0.5 189,793 + GFF1541 0.71 -1.9 189,794 - GFF1541 0.71 +0.5 189,970 + +1.3 189,970 + -2.1 189,971 - -0.4 189,971 - -0.8 189,971 - -1.4 189,971 - -1.4 189,999 - -1.5 189,999 - -1.1 190,048 + -0.3 190,049 - -1.1 190,064 + -0.6 190,076 - -0.3 190,077 + -0.5 190,077 + -0.5 190,094 + -0.3 190,103 + +0.2 190,104 - -0.2 190,144 + -0.8 190,166 - GFF1542 0.10 -0.1 190,166 - GFF1542 0.10 -1.5 190,166 - GFF1542 0.10 -2.1 190,166 - GFF1542 0.10 -0.5 190,190 + GFF1542 0.18 -1.4 190,232 + GFF1542 0.31 +0.1 190,232 + GFF1542 0.31 -1.1 190,233 - GFF1542 0.31 -2.4 190,270 - GFF1542 0.43 +0.2 190,382 - GFF1542 0.78 -1.4 190,444 + -0.1 190,445 - -2.1 190,457 + -0.1 190,462 + -0.9 190,462 + -0.2 190,462 + +0.0 190,462 + +0.7 190,463 - -0.9 190,463 - -0.1 190,463 - +0.5 190,463 - +0.9 190,467 - -0.8 190,467 - -0.5 190,470 + +0.6 190,470 + -1.1 190,470 + -0.6 190,471 - +0.4 190,471 - -0.5 190,471 - +0.9 190,471 - +0.2 190,471 - -0.3 190,471 - -1.1 190,525 + -2.1 190,526 - +0.6 190,526 - -0.9 190,677 + GFF1543 0.29 -0.2 190,677 + GFF1543 0.29 -1.4 190,678 - GFF1543 0.29 -0.4 190,744 + GFF1543 0.38 -0.1 190,744 + GFF1543 0.38 -0.6 190,744 + GFF1543 0.38 -0.9 190,745 - GFF1543 0.38 +0.9 190,745 - GFF1543 0.38 -0.9 190,745 - GFF1543 0.38 -1.3 190,745 - GFF1543 0.38 +0.1 190,745 - GFF1543 0.38 -2.8 190,753 + GFF1543 0.39 -0.4 190,753 + GFF1543 0.39 +0.3 190,753 + GFF1543 0.39 +1.2 190,753 + GFF1543 0.39 -0.9 190,753 + GFF1543 0.39 +0.4 190,753 + GFF1543 0.39 +0.4 190,753 + GFF1543 0.39 -0.6 190,754 - GFF1543 0.39 -1.1 190,754 - GFF1543 0.39 +0.5 190,754 - GFF1543 0.39 -0.5 190,754 - GFF1543 0.39 -0.4 190,773 + GFF1543 0.41 -0.8 190,774 - GFF1543 0.42 +0.6 190,774 - GFF1543 0.42 -1.3 190,774 - GFF1543 0.42 -0.1 190,774 - GFF1543 0.42 -0.7 190,859 + GFF1543 0.53 +0.2 190,859 + GFF1543 0.53 +0.6 190,860 - GFF1543 0.53 +0.9 190,860 - GFF1543 0.53 -0.9 190,860 - GFF1543 0.53 -1.0 190,921 + GFF1543 0.61 -1.4 190,922 - GFF1543 0.61 -0.1 190,922 - GFF1543 0.61 -0.3 190,922 - GFF1543 0.61 +0.2 190,924 + GFF1543 0.61 -0.3 190,924 + GFF1543 0.61 -0.9 190,925 - GFF1543 0.62 -1.4 191,034 + GFF1543 0.76 -0.2 191,034 + GFF1543 0.76 -1.6 191,035 - GFF1543 0.76 -1.1 191,035 - GFF1543 0.76 -0.6 191,035 - GFF1543 0.76 -0.1 191,178 - +0.1 191,184 + -0.6 191,192 + -0.1 191,192 + -1.4 191,192 + -1.9 191,192 + -1.2 191,198 + -1.1 191,199 - -0.9 191,218 + -0.2 191,218 + -0.9 191,218 + -0.1 191,219 - +0.8 191,219 - +0.4 191,219 - -0.6 191,219 - -0.2 191,219 - -1.4 191,229 - +0.6 191,242 + -1.6 191,242 + -1.1 191,242 + +0.9 191,242 + -0.3 191,242 + -0.5 191,242 + -1.1 191,243 - -0.1 191,243 - -1.1 191,243 - -0.2 191,243 - +0.7 191,243 - +0.2 191,244 + -0.5 191,244 + -1.6 191,245 - -0.2 191,245 - -1.1 191,245 - -0.2 191,245 - -0.6 191,401 + GFF1544 0.13 -2.1 191,440 - GFF1544 0.16 -1.1 191,451 - GFF1544 0.17 -1.1
Or see this region's nucleotide sequence