Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1533 and GFF1534 are separated by 72 nucleotides GFF1534 and GFF1535 overlap by 35 nucleotides GFF1535 and GFF1536 are separated by 189 nucleotides GFF1536 and GFF1537 are separated by 33 nucleotides
GFF1533 - Superoxide dismutase [Fe], at 180,358 to 180,939
GFF1533
GFF1534 - hypothetical protein, at 181,012 to 181,158
GFF1534
GFF1535 - Tyrosine recombinase XerC, at 181,124 to 182,005
GFF1535
GFF1536 - hypothetical protein, at 182,195 to 182,848
GFF1536
GFF1537 - Diaminopimelate epimerase, at 182,882 to 183,712
GFF1537
Position (kb) 181
182
183 Strain fitness (log2 ratio) -2
-1
0
1 at 180.161 kb on - strand at 180.214 kb on + strand at 180.214 kb on + strand at 180.215 kb on - strand at 180.215 kb on - strand at 180.283 kb on - strand at 180.301 kb on + strand at 180.301 kb on + strand at 180.301 kb on + strand at 180.301 kb on + strand at 180.301 kb on + strand at 180.302 kb on - strand at 180.302 kb on - strand at 180.305 kb on - strand at 180.306 kb on + strand at 180.306 kb on + strand at 180.307 kb on - strand at 180.307 kb on - strand at 180.307 kb on - strand at 180.307 kb on - strand at 180.307 kb on - strand at 180.307 kb on - strand at 180.307 kb on - strand at 180.307 kb on - strand at 180.307 kb on - strand at 180.307 kb on - strand at 180.329 kb on + strand at 180.329 kb on + strand at 180.334 kb on + strand at 180.334 kb on + strand at 180.335 kb on - strand at 180.335 kb on - strand at 180.335 kb on - strand at 180.335 kb on - strand at 180.359 kb on + strand at 180.359 kb on + strand at 180.359 kb on + strand at 180.360 kb on - strand at 180.360 kb on - strand at 180.360 kb on - strand at 181.008 kb on - strand at 181.041 kb on + strand, within GFF1534 at 181.041 kb on + strand, within GFF1534 at 181.045 kb on - strand, within GFF1534 at 181.045 kb on - strand, within GFF1534 at 181.050 kb on + strand, within GFF1534 at 181.066 kb on - strand, within GFF1534 at 181.092 kb on + strand, within GFF1534 at 181.097 kb on + strand, within GFF1534 at 181.158 kb on + strand at 181.192 kb on + strand at 181.192 kb on + strand at 181.192 kb on + strand at 181.192 kb on + strand at 181.192 kb on + strand at 181.193 kb on - strand at 181.193 kb on - strand at 181.193 kb on - strand at 181.193 kb on - strand at 181.194 kb on + strand at 181.194 kb on + strand at 181.194 kb on + strand at 181.194 kb on + strand at 181.195 kb on - strand at 181.195 kb on - strand at 181.195 kb on - strand at 181.239 kb on - strand, within GFF1535 at 181.247 kb on + strand, within GFF1535 at 181.247 kb on + strand, within GFF1535 at 181.248 kb on - strand, within GFF1535 at 181.248 kb on - strand, within GFF1535 at 181.269 kb on - strand, within GFF1535 at 181.269 kb on - strand, within GFF1535 at 181.269 kb on - strand, within GFF1535 at 181.297 kb on + strand, within GFF1535 at 181.297 kb on + strand, within GFF1535 at 181.297 kb on + strand, within GFF1535 at 181.298 kb on - strand, within GFF1535 at 181.298 kb on - strand, within GFF1535 at 181.394 kb on - strand, within GFF1535 at 181.599 kb on + strand, within GFF1535 at 181.835 kb on - strand, within GFF1535 at 181.916 kb on + strand, within GFF1535 at 181.917 kb on - strand at 181.917 kb on - strand at 181.983 kb on + strand at 181.984 kb on - strand at 181.991 kb on + strand at 181.992 kb on - strand at 181.992 kb on - strand at 181.992 kb on - strand at 182.011 kb on + strand at 182.020 kb on + strand at 182.021 kb on - strand at 182.025 kb on + strand at 182.025 kb on + strand at 182.025 kb on + strand at 182.025 kb on + strand at 182.025 kb on + strand at 182.025 kb on + strand at 182.026 kb on - strand at 182.026 kb on - strand at 182.026 kb on - strand at 182.026 kb on - strand at 182.026 kb on - strand at 182.029 kb on + strand at 182.030 kb on - strand at 182.030 kb on - strand at 182.139 kb on + strand at 182.140 kb on - strand at 182.140 kb on - strand at 182.140 kb on - strand at 182.203 kb on + strand at 182.204 kb on - strand at 182.204 kb on - strand at 182.204 kb on - strand at 182.204 kb on - strand at 182.204 kb on - strand at 182.205 kb on + strand at 182.205 kb on + strand at 182.205 kb on + strand at 182.205 kb on + strand at 182.205 kb on + strand at 182.205 kb on + strand at 182.205 kb on + strand at 182.205 kb on + strand at 182.205 kb on + strand at 182.206 kb on - strand at 182.206 kb on - strand at 182.206 kb on - strand at 182.206 kb on - strand at 182.206 kb on - strand at 182.206 kb on - strand at 182.206 kb on - strand at 182.206 kb on - strand at 182.206 kb on - strand at 182.206 kb on - strand at 182.206 kb on - strand at 182.206 kb on - strand at 182.271 kb on + strand, within GFF1536 at 182.383 kb on + strand, within GFF1536 at 182.384 kb on - strand, within GFF1536 at 182.384 kb on - strand, within GFF1536 at 182.409 kb on + strand, within GFF1536 at 182.410 kb on - strand, within GFF1536 at 182.410 kb on - strand, within GFF1536 at 182.410 kb on - strand, within GFF1536 at 182.498 kb on + strand, within GFF1536 at 182.499 kb on - strand, within GFF1536 at 182.499 kb on - strand, within GFF1536 at 182.499 kb on - strand, within GFF1536 at 182.512 kb on + strand, within GFF1536 at 182.513 kb on - strand, within GFF1536 at 182.583 kb on + strand, within GFF1536 at 182.583 kb on + strand, within GFF1536 at 182.584 kb on - strand, within GFF1536 at 182.584 kb on - strand, within GFF1536 at 182.584 kb on - strand, within GFF1536 at 182.584 kb on - strand, within GFF1536 at 182.584 kb on - strand, within GFF1536 at 182.584 kb on - strand, within GFF1536 at 182.584 kb on - strand, within GFF1536 at 182.584 kb on - strand, within GFF1536 at 182.584 kb on - strand, within GFF1536 at 182.589 kb on - strand, within GFF1536 at 182.589 kb on - strand, within GFF1536 at 182.594 kb on + strand, within GFF1536 at 182.595 kb on - strand, within GFF1536 at 182.659 kb on + strand, within GFF1536 at 182.659 kb on + strand, within GFF1536 at 182.660 kb on - strand, within GFF1536 at 182.665 kb on + strand, within GFF1536 at 182.665 kb on + strand, within GFF1536 at 182.666 kb on - strand, within GFF1536 at 182.666 kb on - strand, within GFF1536 at 182.666 kb on - strand, within GFF1536 at 182.769 kb on - strand, within GFF1536 at 182.769 kb on - strand, within GFF1536 at 182.851 kb on + strand at 182.851 kb on + strand at 182.851 kb on + strand at 182.851 kb on + strand at 182.851 kb on + strand at 182.852 kb on - strand at 182.852 kb on - strand at 182.864 kb on + strand at 182.865 kb on - strand at 182.865 kb on - strand at 182.870 kb on - strand at 182.870 kb on - strand at 182.870 kb on - strand at 182.883 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 180,161 - +0.1 180,214 + -0.6 180,214 + +1.2 180,215 - -0.3 180,215 - -0.6 180,283 - +0.9 180,301 + -1.1 180,301 + -0.4 180,301 + -0.5 180,301 + -0.3 180,301 + +0.2 180,302 - -1.6 180,302 - +0.1 180,305 - -0.6 180,306 + -0.4 180,306 + -1.0 180,307 - -1.1 180,307 - -1.2 180,307 - -0.6 180,307 - -0.2 180,307 - -0.4 180,307 - -2.0 180,307 - -0.6 180,307 - -1.2 180,307 - -1.1 180,307 - +0.1 180,329 + -1.1 180,329 + -0.5 180,334 + -1.4 180,334 + +0.1 180,335 - -0.1 180,335 - -0.5 180,335 - -1.1 180,335 - -0.4 180,359 + -0.5 180,359 + -0.1 180,359 + -0.2 180,360 - -0.9 180,360 - -1.5 180,360 - -0.4 181,008 - -0.4 181,041 + GFF1534 0.20 -0.5 181,041 + GFF1534 0.20 -0.1 181,045 - GFF1534 0.22 -0.6 181,045 - GFF1534 0.22 +1.4 181,050 + GFF1534 0.26 -1.0 181,066 - GFF1534 0.37 -0.6 181,092 + GFF1534 0.54 -0.1 181,097 + GFF1534 0.58 -1.4 181,158 + +0.9 181,192 + -0.6 181,192 + +0.4 181,192 + -0.5 181,192 + -0.1 181,192 + -0.1 181,193 - +0.4 181,193 - -0.6 181,193 - -1.6 181,193 - -1.3 181,194 + -0.4 181,194 + -1.4 181,194 + -0.5 181,194 + +0.1 181,195 - -1.6 181,195 - +0.0 181,195 - -0.1 181,239 - GFF1535 0.13 -1.1 181,247 + GFF1535 0.14 -1.6 181,247 + GFF1535 0.14 -0.6 181,248 - GFF1535 0.14 -1.4 181,248 - GFF1535 0.14 -1.9 181,269 - GFF1535 0.16 -1.8 181,269 - GFF1535 0.16 -1.1 181,269 - GFF1535 0.16 -1.4 181,297 + GFF1535 0.20 +0.2 181,297 + GFF1535 0.20 +0.6 181,297 + GFF1535 0.20 -0.1 181,298 - GFF1535 0.20 -0.2 181,298 - GFF1535 0.20 -1.6 181,394 - GFF1535 0.31 -2.2 181,599 + GFF1535 0.54 -2.1 181,835 - GFF1535 0.81 +0.2 181,916 + GFF1535 0.90 -1.1 181,917 - -1.5 181,917 - +0.1 181,983 + -1.5 181,984 - -0.9 181,991 + +0.2 181,992 - -1.6 181,992 - -1.0 181,992 - -1.4 182,011 + -1.4 182,020 + -0.3 182,021 - -0.4 182,025 + +0.7 182,025 + -0.2 182,025 + -1.9 182,025 + -0.6 182,025 + +0.2 182,025 + -0.6 182,026 - -0.4 182,026 - -0.4 182,026 - -1.2 182,026 - +0.5 182,026 - -1.1 182,029 + +0.5 182,030 - -0.6 182,030 - -0.1 182,139 + +0.2 182,140 - -0.4 182,140 - -1.4 182,140 - -0.7 182,203 + -1.1 182,204 - -0.1 182,204 - -0.5 182,204 - -0.0 182,204 - -1.6 182,204 - -1.6 182,205 + +0.0 182,205 + -1.1 182,205 + +0.7 182,205 + +1.2 182,205 + -0.5 182,205 + -0.4 182,205 + +1.1 182,205 + -0.3 182,205 + -0.3 182,206 - -0.4 182,206 - -0.1 182,206 - -0.4 182,206 - -0.4 182,206 - -0.4 182,206 - -1.5 182,206 - -0.6 182,206 - -1.1 182,206 - -0.9 182,206 - +0.1 182,206 - +0.1 182,206 - -0.1 182,271 + GFF1536 0.12 +0.1 182,383 + GFF1536 0.29 -0.4 182,384 - GFF1536 0.29 -0.4 182,384 - GFF1536 0.29 -0.5 182,409 + GFF1536 0.33 -0.2 182,410 - GFF1536 0.33 -0.5 182,410 - GFF1536 0.33 -2.4 182,410 - GFF1536 0.33 -0.8 182,498 + GFF1536 0.46 +0.7 182,499 - GFF1536 0.46 +0.4 182,499 - GFF1536 0.46 -0.2 182,499 - GFF1536 0.46 +0.3 182,512 + GFF1536 0.48 +0.9 182,513 - GFF1536 0.49 -1.1 182,583 + GFF1536 0.59 -0.5 182,583 + GFF1536 0.59 -0.3 182,584 - GFF1536 0.59 -0.4 182,584 - GFF1536 0.59 -0.5 182,584 - GFF1536 0.59 -1.5 182,584 - GFF1536 0.59 -0.1 182,584 - GFF1536 0.59 -1.9 182,584 - GFF1536 0.59 -0.8 182,584 - GFF1536 0.59 -0.5 182,584 - GFF1536 0.59 -1.6 182,584 - GFF1536 0.59 -0.3 182,589 - GFF1536 0.60 +0.1 182,589 - GFF1536 0.60 -1.0 182,594 + GFF1536 0.61 -1.1 182,595 - GFF1536 0.61 -0.3 182,659 + GFF1536 0.71 -1.1 182,659 + GFF1536 0.71 -1.2 182,660 - GFF1536 0.71 -1.1 182,665 + GFF1536 0.72 +0.5 182,665 + GFF1536 0.72 -0.1 182,666 - GFF1536 0.72 -0.4 182,666 - GFF1536 0.72 -1.6 182,666 - GFF1536 0.72 +0.5 182,769 - GFF1536 0.88 -0.4 182,769 - GFF1536 0.88 +0.4 182,851 + +0.7 182,851 + -2.4 182,851 + +0.0 182,851 + -1.3 182,851 + -1.0 182,852 - +0.0 182,852 - +1.3 182,864 + -0.1 182,865 - -0.3 182,865 - +0.9 182,870 - -0.1 182,870 - -0.1 182,870 - +0.4 182,883 + +0.5
Or see this region's nucleotide sequence