Strain Fitness in Methylophilus sp. DMC18 around GFF1336

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1335 and GFF1336 are separated by 59 nucleotidesGFF1336 and GFF1337 overlap by 1 nucleotidesGFF1337 and GFF1338 overlap by 1 nucleotides GFF1335 - hypothetical protein, at 598,680 to 600,941 GFF1335 GFF1336 - Motility protein B, at 601,001 to 601,936 GFF1336 GFF1337 - Chemotaxis protein PomA, at 601,936 to 602,688 GFF1337 GFF1338 - RNA polymerase sigma factor FliA, at 602,688 to 603,422 GFF1338 Position (kb) 601 602Strain fitness (log2 ratio) -3 -2 -1 0 1at 600.010 kb on + strand, within GFF1335at 600.011 kb on - strand, within GFF1335at 600.072 kb on + strand, within GFF1335at 600.072 kb on + strand, within GFF1335at 600.072 kb on + strand, within GFF1335at 600.073 kb on - strand, within GFF1335at 600.138 kb on + strand, within GFF1335at 600.138 kb on + strand, within GFF1335at 600.228 kb on + strand, within GFF1335at 600.228 kb on + strand, within GFF1335at 600.229 kb on - strand, within GFF1335at 600.329 kb on + strand, within GFF1335at 600.511 kb on + strand, within GFF1335at 600.637 kb on + strand, within GFF1335at 600.672 kb on + strand, within GFF1335at 600.673 kb on - strand, within GFF1335at 600.693 kb on + strand, within GFF1335at 600.693 kb on + strand, within GFF1335at 600.693 kb on + strand, within GFF1335at 600.693 kb on + strand, within GFF1335at 600.694 kb on - strand, within GFF1335at 600.694 kb on - strand, within GFF1335at 600.706 kb on + strand, within GFF1335at 600.706 kb on + strand, within GFF1335at 600.706 kb on + strand, within GFF1335at 600.721 kb on + strandat 600.765 kb on - strandat 600.771 kb on - strandat 600.792 kb on + strandat 600.792 kb on + strandat 600.793 kb on - strandat 600.793 kb on - strandat 600.793 kb on - strandat 600.793 kb on - strandat 600.793 kb on - strandat 600.877 kb on - strandat 600.901 kb on + strandat 600.902 kb on - strandat 600.902 kb on - strandat 600.911 kb on + strandat 600.911 kb on + strandat 600.953 kb on + strandat 601.045 kb on + strandat 601.045 kb on + strandat 601.045 kb on + strandat 601.045 kb on + strandat 601.045 kb on + strandat 601.369 kb on + strand, within GFF1336at 601.369 kb on + strand, within GFF1336at 601.395 kb on + strand, within GFF1336at 601.430 kb on + strand, within GFF1336at 601.431 kb on - strand, within GFF1336at 601.450 kb on + strand, within GFF1336at 601.450 kb on + strand, within GFF1336at 601.450 kb on + strand, within GFF1336at 601.450 kb on + strand, within GFF1336at 601.450 kb on + strand, within GFF1336at 601.450 kb on + strand, within GFF1336at 601.451 kb on - strand, within GFF1336at 601.451 kb on - strand, within GFF1336at 601.451 kb on - strand, within GFF1336at 601.451 kb on - strand, within GFF1336at 601.451 kb on - strand, within GFF1336at 601.451 kb on - strand, within GFF1336at 601.451 kb on - strand, within GFF1336at 601.451 kb on - strand, within GFF1336at 601.453 kb on - strand, within GFF1336at 601.453 kb on - strand, within GFF1336at 601.544 kb on + strand, within GFF1336at 601.623 kb on + strand, within GFF1336at 601.625 kb on + strand, within GFF1336at 601.625 kb on + strand, within GFF1336at 601.625 kb on + strand, within GFF1336at 601.625 kb on + strand, within GFF1336at 601.625 kb on + strand, within GFF1336at 601.625 kb on + strand, within GFF1336at 601.625 kb on + strand, within GFF1336at 601.625 kb on + strand, within GFF1336at 601.625 kb on + strand, within GFF1336at 601.625 kb on + strand, within GFF1336at 601.626 kb on - strand, within GFF1336at 601.626 kb on - strand, within GFF1336at 601.626 kb on - strand, within GFF1336at 601.626 kb on - strand, within GFF1336at 601.626 kb on - strand, within GFF1336at 601.626 kb on - strand, within GFF1336at 601.626 kb on - strand, within GFF1336at 601.626 kb on - strand, within GFF1336at 601.626 kb on - strand, within GFF1336at 601.626 kb on - strand, within GFF1336at 601.626 kb on - strand, within GFF1336at 601.629 kb on + strand, within GFF1336at 601.629 kb on + strand, within GFF1336at 601.629 kb on + strand, within GFF1336at 601.629 kb on + strand, within GFF1336at 601.630 kb on - strand, within GFF1336at 601.630 kb on - strand, within GFF1336at 601.630 kb on - strand, within GFF1336at 601.715 kb on + strand, within GFF1336at 601.716 kb on - strand, within GFF1336at 601.805 kb on - strand, within GFF1336at 601.830 kb on + strand, within GFF1336at 601.830 kb on + strand, within GFF1336at 601.831 kb on - strand, within GFF1336at 601.831 kb on - strand, within GFF1336at 601.831 kb on - strand, within GFF1336at 601.831 kb on - strand, within GFF1336at 601.831 kb on - strand, within GFF1336at 601.831 kb on - strand, within GFF1336at 601.875 kb on + strandat 601.876 kb on - strandat 601.932 kb on + strandat 601.932 kb on + strandat 601.932 kb on + strandat 601.933 kb on - strandat 601.933 kb on - strandat 601.933 kb on - strandat 602.086 kb on + strand, within GFF1337at 602.086 kb on + strand, within GFF1337at 602.110 kb on + strand, within GFF1337at 602.110 kb on + strand, within GFF1337at 602.110 kb on + strand, within GFF1337at 602.110 kb on + strand, within GFF1337at 602.111 kb on - strand, within GFF1337at 602.111 kb on - strand, within GFF1337at 602.117 kb on + strand, within GFF1337at 602.117 kb on + strand, within GFF1337at 602.117 kb on + strand, within GFF1337at 602.118 kb on - strand, within GFF1337at 602.222 kb on - strand, within GFF1337at 602.235 kb on - strand, within GFF1337at 602.285 kb on + strand, within GFF1337at 602.288 kb on + strand, within GFF1337at 602.288 kb on + strand, within GFF1337at 602.288 kb on + strand, within GFF1337at 602.289 kb on - strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.291 kb on + strand, within GFF1337at 602.292 kb on - strand, within GFF1337at 602.292 kb on - strand, within GFF1337at 602.292 kb on - strand, within GFF1337at 602.292 kb on - strand, within GFF1337at 602.292 kb on - strand, within GFF1337at 602.292 kb on - strand, within GFF1337at 602.292 kb on - strand, within GFF1337at 602.292 kb on - strand, within GFF1337at 602.292 kb on - strand, within GFF1337at 602.292 kb on - strand, within GFF1337at 602.292 kb on - strand, within GFF1337at 602.295 kb on + strand, within GFF1337at 602.295 kb on + strand, within GFF1337at 602.295 kb on + strand, within GFF1337at 602.295 kb on + strand, within GFF1337at 602.296 kb on - strand, within GFF1337at 602.296 kb on - strand, within GFF1337at 602.296 kb on - strand, within GFF1337at 602.296 kb on - strand, within GFF1337at 602.623 kb on + strandat 602.623 kb on + strandat 602.810 kb on + strand, within GFF1338at 602.824 kb on + strand, within GFF1338at 602.827 kb on + strand, within GFF1338at 602.827 kb on + strand, within GFF1338at 602.827 kb on + strand, within GFF1338at 602.828 kb on - strand, within GFF1338at 602.828 kb on - strand, within GFF1338at 602.842 kb on - strand, within GFF1338at 602.842 kb on - strand, within GFF1338at 602.878 kb on - strand, within GFF1338at 602.930 kb on + strand, within GFF1338

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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600,010 + GFF1335 0.59 -0.3
600,011 - GFF1335 0.59 -0.8
600,072 + GFF1335 0.62 +0.4
600,072 + GFF1335 0.62 -1.3
600,072 + GFF1335 0.62 +0.8
600,073 - GFF1335 0.62 -2.1
600,138 + GFF1335 0.64 -0.7
600,138 + GFF1335 0.64 -1.0
600,228 + GFF1335 0.68 -0.3
600,228 + GFF1335 0.68 +1.0
600,229 - GFF1335 0.68 -1.0
600,329 + GFF1335 0.73 -0.6
600,511 + GFF1335 0.81 +0.3
600,637 + GFF1335 0.87 +0.5
600,672 + GFF1335 0.88 -0.1
600,673 - GFF1335 0.88 +0.7
600,693 + GFF1335 0.89 +0.3
600,693 + GFF1335 0.89 -0.1
600,693 + GFF1335 0.89 -1.0
600,693 + GFF1335 0.89 -0.8
600,694 - GFF1335 0.89 -0.4
600,694 - GFF1335 0.89 -1.3
600,706 + GFF1335 0.90 +0.0
600,706 + GFF1335 0.90 -2.9
600,706 + GFF1335 0.90 -0.1
600,721 + +0.1
600,765 - +0.7
600,771 - +1.0
600,792 + +0.3
600,792 + -0.5
600,793 - +0.1
600,793 - -1.3
600,793 - -1.5
600,793 - -1.3
600,793 - -1.3
600,877 - +0.0
600,901 + +0.0
600,902 - +0.4
600,902 - -0.3
600,911 + -1.5
600,911 + +0.5
600,953 + +0.2
601,045 + +0.7
601,045 + -0.3
601,045 + -1.0
601,045 + +0.6
601,045 + -1.1
601,369 + GFF1336 0.39 +0.7
601,369 + GFF1336 0.39 +0.7
601,395 + GFF1336 0.42 +0.0
601,430 + GFF1336 0.46 -1.0
601,431 - GFF1336 0.46 -2.9
601,450 + GFF1336 0.48 +0.0
601,450 + GFF1336 0.48 +1.0
601,450 + GFF1336 0.48 +0.3
601,450 + GFF1336 0.48 -1.6
601,450 + GFF1336 0.48 +0.4
601,450 + GFF1336 0.48 +0.4
601,451 - GFF1336 0.48 +0.0
601,451 - GFF1336 0.48 -1.0
601,451 - GFF1336 0.48 -1.3
601,451 - GFF1336 0.48 +0.0
601,451 - GFF1336 0.48 +0.5
601,451 - GFF1336 0.48 +0.0
601,451 - GFF1336 0.48 -0.1
601,451 - GFF1336 0.48 -2.0
601,453 - GFF1336 0.48 -0.2
601,453 - GFF1336 0.48 -0.4
601,544 + GFF1336 0.58 +0.2
601,623 + GFF1336 0.66 +0.3
601,625 + GFF1336 0.67 -1.0
601,625 + GFF1336 0.67 +0.8
601,625 + GFF1336 0.67 +0.4
601,625 + GFF1336 0.67 -0.5
601,625 + GFF1336 0.67 -1.0
601,625 + GFF1336 0.67 -0.2
601,625 + GFF1336 0.67 -1.6
601,625 + GFF1336 0.67 +0.2
601,625 + GFF1336 0.67 -0.3
601,625 + GFF1336 0.67 -1.2
601,626 - GFF1336 0.67 -1.8
601,626 - GFF1336 0.67 -0.3
601,626 - GFF1336 0.67 -0.3
601,626 - GFF1336 0.67 -0.2
601,626 - GFF1336 0.67 +0.4
601,626 - GFF1336 0.67 -0.3
601,626 - GFF1336 0.67 -0.8
601,626 - GFF1336 0.67 -0.1
601,626 - GFF1336 0.67 +0.7
601,626 - GFF1336 0.67 +0.0
601,626 - GFF1336 0.67 -1.6
601,629 + GFF1336 0.67 -2.0
601,629 + GFF1336 0.67 +0.0
601,629 + GFF1336 0.67 -0.3
601,629 + GFF1336 0.67 +0.2
601,630 - GFF1336 0.67 -2.2
601,630 - GFF1336 0.67 -0.3
601,630 - GFF1336 0.67 -0.3
601,715 + GFF1336 0.76 -2.4
601,716 - GFF1336 0.76 -0.6
601,805 - GFF1336 0.86 +0.4
601,830 + GFF1336 0.89 +0.5
601,830 + GFF1336 0.89 +0.4
601,831 - GFF1336 0.89 -0.8
601,831 - GFF1336 0.89 +0.6
601,831 - GFF1336 0.89 -1.0
601,831 - GFF1336 0.89 +0.2
601,831 - GFF1336 0.89 +0.0
601,831 - GFF1336 0.89 -0.6
601,875 + -0.7
601,876 - -0.8
601,932 + -2.3
601,932 + -3.5
601,932 + +0.6
601,933 - +0.1
601,933 - -1.0
601,933 - -1.3
602,086 + GFF1337 0.20 -0.3
602,086 + GFF1337 0.20 +0.4
602,110 + GFF1337 0.23 +0.3
602,110 + GFF1337 0.23 +0.0
602,110 + GFF1337 0.23 -1.5
602,110 + GFF1337 0.23 -0.3
602,111 - GFF1337 0.23 +0.0
602,111 - GFF1337 0.23 -1.0
602,117 + GFF1337 0.24 -0.4
602,117 + GFF1337 0.24 +0.8
602,117 + GFF1337 0.24 -1.0
602,118 - GFF1337 0.24 +1.3
602,222 - GFF1337 0.38 +0.4
602,235 - GFF1337 0.40 +0.9
602,285 + GFF1337 0.46 -2.3
602,288 + GFF1337 0.47 -1.2
602,288 + GFF1337 0.47 -0.3
602,288 + GFF1337 0.47 -0.6
602,289 - GFF1337 0.47 +0.0
602,291 + GFF1337 0.47 -0.6
602,291 + GFF1337 0.47 -1.0
602,291 + GFF1337 0.47 +0.8
602,291 + GFF1337 0.47 -0.8
602,291 + GFF1337 0.47 -0.8
602,291 + GFF1337 0.47 -0.1
602,291 + GFF1337 0.47 -0.3
602,291 + GFF1337 0.47 -0.7
602,291 + GFF1337 0.47 -0.1
602,291 + GFF1337 0.47 +0.6
602,291 + GFF1337 0.47 -0.6
602,291 + GFF1337 0.47 -0.6
602,291 + GFF1337 0.47 +0.7
602,291 + GFF1337 0.47 +0.0
602,291 + GFF1337 0.47 -2.0
602,291 + GFF1337 0.47 +0.6
602,291 + GFF1337 0.47 +0.3
602,291 + GFF1337 0.47 -0.6
602,291 + GFF1337 0.47 +0.0
602,292 - GFF1337 0.47 -0.5
602,292 - GFF1337 0.47 +0.0
602,292 - GFF1337 0.47 +1.5
602,292 - GFF1337 0.47 -0.4
602,292 - GFF1337 0.47 +0.0
602,292 - GFF1337 0.47 +0.7
602,292 - GFF1337 0.47 -0.4
602,292 - GFF1337 0.47 -1.0
602,292 - GFF1337 0.47 -0.3
602,292 - GFF1337 0.47 -1.0
602,292 - GFF1337 0.47 -1.0
602,295 + GFF1337 0.48 -1.4
602,295 + GFF1337 0.48 -0.1
602,295 + GFF1337 0.48 +0.0
602,295 + GFF1337 0.48 -1.2
602,296 - GFF1337 0.48 +0.0
602,296 - GFF1337 0.48 +1.0
602,296 - GFF1337 0.48 -1.0
602,296 - GFF1337 0.48 -1.3
602,623 + -0.5
602,623 + -0.3
602,810 + GFF1338 0.17 +0.0
602,824 + GFF1338 0.19 -1.0
602,827 + GFF1338 0.19 -1.6
602,827 + GFF1338 0.19 -0.4
602,827 + GFF1338 0.19 -2.3
602,828 - GFF1338 0.19 -0.6
602,828 - GFF1338 0.19 -1.6
602,842 - GFF1338 0.21 -0.3
602,842 - GFF1338 0.21 -1.3
602,878 - GFF1338 0.26 -0.3
602,930 + GFF1338 0.33 -1.7

Or see this region's nucleotide sequence