Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1323 and GFF1324 are separated by 39 nucleotides GFF1324 and GFF1325 are separated by 13 nucleotides GFF1325 and GFF1326 are separated by 70 nucleotides GFF1326 and GFF1327 are separated by 221 nucleotides
GFF1323 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 584,564 to 585,109
GFF1323
GFF1324 - dTDP-4-dehydrorhamnose reductase, at 585,149 to 586,066
GFF1324
GFF1325 - hypothetical protein, at 586,080 to 586,526
GFF1325
GFF1326 - hypothetical protein, at 586,597 to 586,770
GFF1326
GFF1327 - Hydroperoxy fatty acid reductase gpx1, at 586,992 to 587,522
GFF1327
Position (kb) 586
587 Strain fitness (log2 ratio) -2
-1
0
1 at 585.111 kb on + strand at 585.111 kb on + strand at 585.111 kb on + strand at 585.111 kb on + strand at 585.112 kb on - strand at 585.112 kb on - strand at 585.114 kb on + strand at 585.115 kb on - strand at 585.115 kb on - strand at 585.119 kb on + strand at 585.119 kb on + strand at 585.119 kb on + strand at 585.120 kb on - strand at 585.142 kb on + strand at 585.142 kb on + strand at 585.142 kb on + strand at 586.026 kb on + strand at 586.081 kb on + strand at 586.082 kb on - strand at 586.082 kb on - strand at 586.163 kb on + strand, within GFF1325 at 586.190 kb on + strand, within GFF1325 at 586.191 kb on - strand, within GFF1325 at 586.298 kb on - strand, within GFF1325 at 586.354 kb on - strand, within GFF1325 at 586.372 kb on - strand, within GFF1325 at 586.372 kb on - strand, within GFF1325 at 586.424 kb on + strand, within GFF1325 at 586.425 kb on - strand, within GFF1325 at 586.458 kb on - strand, within GFF1325 at 586.514 kb on + strand at 586.514 kb on + strand at 586.515 kb on - strand at 586.518 kb on - strand at 586.535 kb on + strand at 586.535 kb on + strand at 586.537 kb on + strand at 586.537 kb on + strand at 586.538 kb on - strand at 586.538 kb on - strand at 586.538 kb on - strand at 586.538 kb on - strand at 586.538 kb on - strand at 586.602 kb on - strand at 586.614 kb on + strand at 586.614 kb on + strand at 586.643 kb on + strand, within GFF1326 at 586.644 kb on - strand, within GFF1326 at 586.650 kb on + strand, within GFF1326 at 586.650 kb on + strand, within GFF1326 at 586.651 kb on - strand, within GFF1326 at 586.651 kb on - strand, within GFF1326 at 586.664 kb on + strand, within GFF1326 at 586.665 kb on - strand, within GFF1326 at 586.665 kb on - strand, within GFF1326 at 586.668 kb on + strand, within GFF1326 at 586.668 kb on + strand, within GFF1326 at 586.669 kb on - strand, within GFF1326 at 586.669 kb on - strand, within GFF1326 at 586.669 kb on - strand, within GFF1326 at 586.669 kb on - strand, within GFF1326 at 586.669 kb on - strand, within GFF1326 at 586.673 kb on + strand, within GFF1326 at 586.685 kb on + strand, within GFF1326 at 586.685 kb on + strand, within GFF1326 at 586.686 kb on - strand, within GFF1326 at 586.749 kb on + strand, within GFF1326 at 586.750 kb on - strand, within GFF1326 at 586.750 kb on - strand, within GFF1326 at 586.750 kb on - strand, within GFF1326 at 586.766 kb on - strand at 586.790 kb on - strand at 586.827 kb on - strand at 586.837 kb on + strand at 586.843 kb on - strand at 586.843 kb on - strand at 586.843 kb on - strand at 586.843 kb on - strand at 586.869 kb on - strand at 586.872 kb on + strand at 586.872 kb on + strand at 586.873 kb on - strand at 586.893 kb on + strand at 586.894 kb on - strand at 586.920 kb on + strand at 586.939 kb on + strand at 586.951 kb on + strand at 586.951 kb on + strand at 586.951 kb on + strand at 586.952 kb on - strand at 586.952 kb on - strand at 586.961 kb on + strand at 586.961 kb on + strand at 586.972 kb on + strand at 586.972 kb on + strand at 586.972 kb on + strand at 586.973 kb on - strand at 586.973 kb on - strand at 586.973 kb on - strand at 586.973 kb on - strand at 586.973 kb on - strand at 586.976 kb on + strand at 586.977 kb on - strand at 587.003 kb on + strand at 587.003 kb on + strand at 587.004 kb on - strand at 587.004 kb on - strand at 587.005 kb on + strand at 587.006 kb on - strand at 587.062 kb on + strand, within GFF1327 at 587.062 kb on + strand, within GFF1327 at 587.064 kb on + strand, within GFF1327 at 587.064 kb on + strand, within GFF1327 at 587.064 kb on + strand, within GFF1327 at 587.064 kb on + strand, within GFF1327 at 587.065 kb on - strand, within GFF1327 at 587.065 kb on - strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.196 kb on + strand, within GFF1327 at 587.197 kb on - strand, within GFF1327 at 587.197 kb on - strand, within GFF1327 at 587.197 kb on - strand, within GFF1327 at 587.197 kb on - strand, within GFF1327 at 587.197 kb on - strand, within GFF1327 at 587.205 kb on + strand, within GFF1327 at 587.205 kb on + strand, within GFF1327 at 587.205 kb on + strand, within GFF1327 at 587.205 kb on + strand, within GFF1327 at 587.205 kb on + strand, within GFF1327 at 587.205 kb on + strand, within GFF1327 at 587.206 kb on - strand, within GFF1327 at 587.206 kb on - strand, within GFF1327 at 587.206 kb on - strand, within GFF1327 at 587.206 kb on - strand, within GFF1327 at 587.207 kb on + strand, within GFF1327 at 587.207 kb on + strand, within GFF1327 at 587.207 kb on + strand, within GFF1327 at 587.207 kb on + strand, within GFF1327 at 587.207 kb on + strand, within GFF1327 at 587.207 kb on + strand, within GFF1327 at 587.207 kb on + strand, within GFF1327 at 587.207 kb on + strand, within GFF1327 at 587.208 kb on - strand, within GFF1327 at 587.213 kb on + strand, within GFF1327 at 587.213 kb on + strand, within GFF1327 at 587.214 kb on - strand, within GFF1327 at 587.304 kb on + strand, within GFF1327 at 587.322 kb on - strand, within GFF1327 at 587.322 kb on - strand, within GFF1327 at 587.368 kb on - strand, within GFF1327 at 587.421 kb on + strand, within GFF1327 at 587.421 kb on + strand, within GFF1327 at 587.421 kb on + strand, within GFF1327 at 587.452 kb on - strand, within GFF1327 at 587.459 kb on + strand, within GFF1327 at 587.459 kb on + strand, within GFF1327 at 587.459 kb on + strand, within GFF1327 at 587.460 kb on - strand, within GFF1327 at 587.465 kb on + strand, within GFF1327 at 587.465 kb on + strand, within GFF1327 at 587.466 kb on - strand, within GFF1327 at 587.520 kb on + strand at 587.520 kb on + strand at 587.520 kb on + strand at 587.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 585,111 + +0.8 585,111 + +0.6 585,111 + +0.4 585,111 + -0.1 585,112 - -1.3 585,112 - -0.2 585,114 + +0.4 585,115 - -0.6 585,115 - +0.3 585,119 + -1.5 585,119 + -0.3 585,119 + -0.1 585,120 - +0.4 585,142 + +0.0 585,142 + -0.8 585,142 + -0.1 586,026 + +0.2 586,081 + -0.8 586,082 - -1.0 586,082 - +0.0 586,163 + GFF1325 0.19 -1.3 586,190 + GFF1325 0.25 -1.0 586,191 - GFF1325 0.25 -2.2 586,298 - GFF1325 0.49 -1.1 586,354 - GFF1325 0.61 -1.0 586,372 - GFF1325 0.65 +0.6 586,372 - GFF1325 0.65 -1.0 586,424 + GFF1325 0.77 -0.3 586,425 - GFF1325 0.77 -0.6 586,458 - GFF1325 0.85 +0.2 586,514 + -1.0 586,514 + -1.3 586,515 - +0.0 586,518 - +0.6 586,535 + -0.6 586,535 + -1.0 586,537 + -1.4 586,537 + -1.2 586,538 - +0.0 586,538 - +0.4 586,538 - -0.3 586,538 - -0.5 586,538 - +0.0 586,602 - -0.3 586,614 + +0.6 586,614 + -0.3 586,643 + GFF1326 0.26 +0.0 586,644 - GFF1326 0.27 -0.6 586,650 + GFF1326 0.30 -1.8 586,650 + GFF1326 0.30 -0.2 586,651 - GFF1326 0.31 -0.5 586,651 - GFF1326 0.31 -0.9 586,664 + GFF1326 0.39 -0.7 586,665 - GFF1326 0.39 -1.0 586,665 - GFF1326 0.39 -0.5 586,668 + GFF1326 0.41 -0.4 586,668 + GFF1326 0.41 -0.5 586,669 - GFF1326 0.41 -1.2 586,669 - GFF1326 0.41 +0.2 586,669 - GFF1326 0.41 -0.5 586,669 - GFF1326 0.41 -0.8 586,669 - GFF1326 0.41 -0.3 586,673 + GFF1326 0.44 -1.3 586,685 + GFF1326 0.51 +0.4 586,685 + GFF1326 0.51 -0.7 586,686 - GFF1326 0.51 -0.3 586,749 + GFF1326 0.87 -0.2 586,750 - GFF1326 0.88 -0.4 586,750 - GFF1326 0.88 -1.2 586,750 - GFF1326 0.88 -1.6 586,766 - -0.1 586,790 - -1.3 586,827 - +0.0 586,837 + -0.2 586,843 - -2.7 586,843 - -0.6 586,843 - -2.5 586,843 - -1.3 586,869 - +0.5 586,872 + -1.8 586,872 + -1.2 586,873 - -1.3 586,893 + -0.6 586,894 - -1.0 586,920 + +0.4 586,939 + -0.1 586,951 + -0.3 586,951 + +0.1 586,951 + -0.6 586,952 - -1.0 586,952 - +0.8 586,961 + +0.6 586,961 + +0.8 586,972 + -0.4 586,972 + +1.3 586,972 + -0.3 586,973 - -0.1 586,973 - +0.2 586,973 - +0.1 586,973 - -0.9 586,973 - +1.7 586,976 + +1.1 586,977 - -0.4 587,003 + +0.7 587,003 + +0.6 587,004 - +0.1 587,004 - +0.7 587,005 + +0.6 587,006 - +0.0 587,062 + GFF1327 0.13 +0.1 587,062 + GFF1327 0.13 +0.2 587,064 + GFF1327 0.14 +0.2 587,064 + GFF1327 0.14 +0.4 587,064 + GFF1327 0.14 +0.7 587,064 + GFF1327 0.14 -1.3 587,065 - GFF1327 0.14 +0.2 587,065 - GFF1327 0.14 +0.8 587,196 + GFF1327 0.38 +0.6 587,196 + GFF1327 0.38 -0.6 587,196 + GFF1327 0.38 +0.3 587,196 + GFF1327 0.38 +0.3 587,196 + GFF1327 0.38 +0.4 587,196 + GFF1327 0.38 +0.9 587,196 + GFF1327 0.38 -0.4 587,196 + GFF1327 0.38 +0.4 587,196 + GFF1327 0.38 +0.4 587,196 + GFF1327 0.38 +0.4 587,196 + GFF1327 0.38 +1.0 587,196 + GFF1327 0.38 -0.5 587,196 + GFF1327 0.38 +1.5 587,196 + GFF1327 0.38 +0.4 587,196 + GFF1327 0.38 +0.3 587,196 + GFF1327 0.38 +0.2 587,197 - GFF1327 0.39 +0.9 587,197 - GFF1327 0.39 +0.4 587,197 - GFF1327 0.39 +0.2 587,197 - GFF1327 0.39 -0.4 587,197 - GFF1327 0.39 -0.1 587,205 + GFF1327 0.40 +0.4 587,205 + GFF1327 0.40 +0.6 587,205 + GFF1327 0.40 +0.2 587,205 + GFF1327 0.40 +1.1 587,205 + GFF1327 0.40 +0.9 587,205 + GFF1327 0.40 +1.2 587,206 - GFF1327 0.40 -0.3 587,206 - GFF1327 0.40 +0.6 587,206 - GFF1327 0.40 +0.8 587,206 - GFF1327 0.40 +1.0 587,207 + GFF1327 0.40 +1.2 587,207 + GFF1327 0.40 +0.6 587,207 + GFF1327 0.40 +0.5 587,207 + GFF1327 0.40 +0.8 587,207 + GFF1327 0.40 +0.2 587,207 + GFF1327 0.40 -0.8 587,207 + GFF1327 0.40 +0.7 587,207 + GFF1327 0.40 +0.1 587,208 - GFF1327 0.41 +0.8 587,213 + GFF1327 0.42 +0.8 587,213 + GFF1327 0.42 +0.1 587,214 - GFF1327 0.42 +0.6 587,304 + GFF1327 0.59 +0.8 587,322 - GFF1327 0.62 +0.9 587,322 - GFF1327 0.62 +0.2 587,368 - GFF1327 0.71 +0.3 587,421 + GFF1327 0.81 +0.7 587,421 + GFF1327 0.81 +0.5 587,421 + GFF1327 0.81 +0.4 587,452 - GFF1327 0.87 +1.0 587,459 + GFF1327 0.88 +0.4 587,459 + GFF1327 0.88 +1.3 587,459 + GFF1327 0.88 +0.0 587,460 - GFF1327 0.88 +0.1 587,465 + GFF1327 0.89 +1.6 587,465 + GFF1327 0.89 +0.2 587,466 - GFF1327 0.89 +1.0 587,520 + +0.1 587,520 + -0.3 587,520 + +0.5 587,521 - +0.2
Or see this region's nucleotide sequence