Strain Fitness in Methylophilus sp. DMC18 around GFF132

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF130 and GFF131 are separated by 20 nucleotidesGFF131 and GFF132 are separated by 1 nucleotidesGFF132 and GFF133 are separated by 61 nucleotidesGFF133 and GFF134 are separated by 10 nucleotidesGFF134 and GFF135 are separated by 101 nucleotides GFF130 - Molybdate-binding protein ModA, at 135,028 to 135,786 GFF130 GFF131 - Sulfate transport system permease protein CysT, at 135,807 to 136,484 GFF131 GFF132 - Vitamin B12 import ATP-binding protein BtuD, at 136,486 to 137,556 GFF132 GFF133 - hypothetical protein, at 137,618 to 137,959 GFF133 GFF134 - Molybdenum-pterin-binding protein MopA, at 137,970 to 138,398 GFF134 GFF135 - Thiosulfate sulfurtransferase GlpE, at 138,500 to 138,844 GFF135 Position (kb) 136 137 138Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 135.541 kb on + strand, within GFF130at 135.541 kb on + strand, within GFF130at 135.606 kb on + strand, within GFF130at 135.618 kb on + strand, within GFF130at 135.618 kb on + strand, within GFF130at 135.646 kb on + strand, within GFF130at 135.647 kb on - strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.690 kb on - strand, within GFF130at 135.690 kb on - strand, within GFF130at 135.690 kb on - strand, within GFF130at 135.690 kb on - strand, within GFF130at 135.693 kb on + strand, within GFF130at 135.693 kb on + strand, within GFF130at 135.774 kb on + strandat 135.774 kb on + strandat 135.774 kb on + strandat 135.775 kb on - strandat 135.775 kb on - strandat 135.811 kb on + strandat 135.812 kb on - strandat 135.824 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.827 kb on - strandat 135.827 kb on - strandat 135.827 kb on - strandat 135.827 kb on - strandat 135.874 kb on + strandat 135.875 kb on - strand, within GFF131at 135.887 kb on - strand, within GFF131at 135.996 kb on + strand, within GFF131at 135.996 kb on + strand, within GFF131at 135.996 kb on + strand, within GFF131at 135.996 kb on + strand, within GFF131at 135.997 kb on - strand, within GFF131at 135.997 kb on - strand, within GFF131at 135.997 kb on - strand, within GFF131at 135.997 kb on - strand, within GFF131at 136.103 kb on + strand, within GFF131at 136.105 kb on + strand, within GFF131at 136.105 kb on + strand, within GFF131at 136.105 kb on + strand, within GFF131at 136.106 kb on - strand, within GFF131at 136.106 kb on - strand, within GFF131at 136.107 kb on + strand, within GFF131at 136.107 kb on + strand, within GFF131at 136.108 kb on - strand, within GFF131at 136.121 kb on + strand, within GFF131at 136.177 kb on + strand, within GFF131at 136.262 kb on + strand, within GFF131at 136.262 kb on + strand, within GFF131at 136.262 kb on + strand, within GFF131at 136.263 kb on - strand, within GFF131at 136.303 kb on + strand, within GFF131at 136.303 kb on + strand, within GFF131at 136.304 kb on - strand, within GFF131at 136.312 kb on + strand, within GFF131at 136.359 kb on + strand, within GFF131at 136.385 kb on + strand, within GFF131at 136.385 kb on + strand, within GFF131at 136.386 kb on - strand, within GFF131at 136.386 kb on - strand, within GFF131at 136.397 kb on + strand, within GFF131at 136.397 kb on + strand, within GFF131at 136.398 kb on - strand, within GFF131at 136.530 kb on + strandat 136.541 kb on + strandat 136.541 kb on + strandat 136.541 kb on + strandat 136.542 kb on - strandat 136.542 kb on - strandat 136.620 kb on + strand, within GFF132at 136.651 kb on + strand, within GFF132at 136.651 kb on + strand, within GFF132at 136.651 kb on + strand, within GFF132at 136.690 kb on + strand, within GFF132at 136.690 kb on + strand, within GFF132at 136.697 kb on + strand, within GFF132at 136.698 kb on - strand, within GFF132at 136.701 kb on + strand, within GFF132at 136.701 kb on + strand, within GFF132at 136.701 kb on + strand, within GFF132at 136.701 kb on + strand, within GFF132at 136.701 kb on + strand, within GFF132at 136.723 kb on + strand, within GFF132at 136.723 kb on + strand, within GFF132at 136.797 kb on + strand, within GFF132at 136.928 kb on + strand, within GFF132at 136.929 kb on - strand, within GFF132at 136.944 kb on - strand, within GFF132at 137.044 kb on + strand, within GFF132at 137.045 kb on - strand, within GFF132at 137.045 kb on - strand, within GFF132at 137.045 kb on - strand, within GFF132at 137.069 kb on + strand, within GFF132at 137.089 kb on - strand, within GFF132at 137.089 kb on - strand, within GFF132at 137.089 kb on - strand, within GFF132at 137.095 kb on - strand, within GFF132at 137.309 kb on + strand, within GFF132at 137.309 kb on + strand, within GFF132at 137.313 kb on + strand, within GFF132at 137.313 kb on + strand, within GFF132at 137.313 kb on + strand, within GFF132at 137.313 kb on + strand, within GFF132at 137.313 kb on + strand, within GFF132at 137.314 kb on - strand, within GFF132at 137.314 kb on - strand, within GFF132at 137.314 kb on - strand, within GFF132at 137.314 kb on - strand, within GFF132at 137.406 kb on - strand, within GFF132at 137.525 kb on + strandat 137.554 kb on + strandat 137.554 kb on + strandat 137.622 kb on + strandat 137.622 kb on + strandat 137.622 kb on + strandat 137.623 kb on - strandat 137.623 kb on - strandat 137.623 kb on - strandat 137.633 kb on + strandat 137.633 kb on + strandat 137.633 kb on + strandat 137.633 kb on + strandat 137.634 kb on - strandat 137.634 kb on - strandat 137.716 kb on + strand, within GFF133at 137.716 kb on + strand, within GFF133at 137.750 kb on - strand, within GFF133at 137.750 kb on - strand, within GFF133at 137.750 kb on - strand, within GFF133at 137.759 kb on + strand, within GFF133at 137.798 kb on - strand, within GFF133at 137.814 kb on + strand, within GFF133at 137.828 kb on + strand, within GFF133at 137.828 kb on + strand, within GFF133at 137.828 kb on + strand, within GFF133at 137.881 kb on + strand, within GFF133at 137.971 kb on + strandat 137.971 kb on + strandat 137.971 kb on + strandat 137.989 kb on - strandat 138.065 kb on + strand, within GFF134at 138.066 kb on - strand, within GFF134at 138.066 kb on - strand, within GFF134at 138.164 kb on + strand, within GFF134at 138.164 kb on + strand, within GFF134at 138.164 kb on + strand, within GFF134at 138.164 kb on + strand, within GFF134at 138.165 kb on - strand, within GFF134at 138.165 kb on - strand, within GFF134at 138.181 kb on + strand, within GFF134at 138.336 kb on + strand, within GFF134at 138.336 kb on + strand, within GFF134at 138.336 kb on + strand, within GFF134at 138.336 kb on + strand, within GFF134at 138.336 kb on + strand, within GFF134at 138.337 kb on - strand, within GFF134at 138.337 kb on - strand, within GFF134at 138.337 kb on - strand, within GFF134at 138.337 kb on - strand, within GFF134at 138.351 kb on + strand, within GFF134at 138.352 kb on - strand, within GFF134at 138.380 kb on + strandat 138.404 kb on + strandat 138.426 kb on + strandat 138.426 kb on + strandat 138.427 kb on - strandat 138.427 kb on - strandat 138.432 kb on + strandat 138.432 kb on + strandat 138.437 kb on + strandat 138.438 kb on - strandat 138.438 kb on - strandat 138.438 kb on - strandat 138.438 kb on - strandat 138.438 kb on - strandat 138.438 kb on - strandat 138.438 kb on - strandat 138.438 kb on - strandat 138.496 kb on + strandat 138.496 kb on + strandat 138.497 kb on - strandat 138.497 kb on - strandat 138.497 kb on - strandat 138.498 kb on + strandat 138.498 kb on + strandat 138.499 kb on - strandat 138.499 kb on - strandat 138.499 kb on - strandat 138.501 kb on + strandat 138.502 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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135,541 + GFF130 0.68 -0.6
135,541 + GFF130 0.68 -0.6
135,606 + GFF130 0.76 -1.0
135,618 + GFF130 0.78 -1.0
135,618 + GFF130 0.78 -0.4
135,646 + GFF130 0.81 +0.2
135,647 - GFF130 0.82 -1.3
135,689 + GFF130 0.87 -1.0
135,689 + GFF130 0.87 -0.9
135,689 + GFF130 0.87 -0.8
135,689 + GFF130 0.87 +0.6
135,689 + GFF130 0.87 -2.8
135,689 + GFF130 0.87 -1.0
135,690 - GFF130 0.87 +0.7
135,690 - GFF130 0.87 -1.3
135,690 - GFF130 0.87 +0.3
135,690 - GFF130 0.87 -2.2
135,693 + GFF130 0.88 -1.3
135,693 + GFF130 0.88 -1.8
135,774 + +1.3
135,774 + -1.9
135,774 + -0.3
135,775 - -1.0
135,775 - +0.2
135,811 + +1.2
135,812 - -1.8
135,824 + -0.4
135,826 + -0.3
135,826 + -2.2
135,826 + -1.3
135,826 + -0.4
135,826 + -0.3
135,826 + -0.6
135,826 + -0.4
135,826 + +0.1
135,827 - -1.9
135,827 - -1.6
135,827 - -0.6
135,827 - -1.3
135,874 + -2.3
135,875 - GFF131 0.10 -2.6
135,887 - GFF131 0.12 -1.8
135,996 + GFF131 0.28 -0.1
135,996 + GFF131 0.28 -0.3
135,996 + GFF131 0.28 -2.2
135,996 + GFF131 0.28 -1.0
135,997 - GFF131 0.28 -0.8
135,997 - GFF131 0.28 +0.0
135,997 - GFF131 0.28 +0.0
135,997 - GFF131 0.28 -0.8
136,103 + GFF131 0.44 -1.3
136,105 + GFF131 0.44 -0.6
136,105 + GFF131 0.44 -1.2
136,105 + GFF131 0.44 -1.5
136,106 - GFF131 0.44 +0.6
136,106 - GFF131 0.44 -1.6
136,107 + GFF131 0.44 -0.6
136,107 + GFF131 0.44 -2.8
136,108 - GFF131 0.44 -1.3
136,121 + GFF131 0.46 -1.7
136,177 + GFF131 0.55 -1.8
136,262 + GFF131 0.67 -0.6
136,262 + GFF131 0.67 -2.2
136,262 + GFF131 0.67 -1.3
136,263 - GFF131 0.67 -0.7
136,303 + GFF131 0.73 -1.2
136,303 + GFF131 0.73 -0.6
136,304 - GFF131 0.73 +0.0
136,312 + GFF131 0.74 -1.3
136,359 + GFF131 0.81 -0.6
136,385 + GFF131 0.85 -0.3
136,385 + GFF131 0.85 -1.3
136,386 - GFF131 0.85 -1.3
136,386 - GFF131 0.85 -0.7
136,397 + GFF131 0.87 -0.6
136,397 + GFF131 0.87 -0.2
136,398 - GFF131 0.87 -1.4
136,530 + -0.2
136,541 + -1.0
136,541 + -4.0
136,541 + -3.1
136,542 - -1.2
136,542 - -1.6
136,620 + GFF132 0.13 -2.2
136,651 + GFF132 0.15 -1.3
136,651 + GFF132 0.15 +0.0
136,651 + GFF132 0.15 -1.0
136,690 + GFF132 0.19 -2.0
136,690 + GFF132 0.19 -0.8
136,697 + GFF132 0.20 -0.8
136,698 - GFF132 0.20 -1.3
136,701 + GFF132 0.20 -1.0
136,701 + GFF132 0.20 -0.6
136,701 + GFF132 0.20 -1.0
136,701 + GFF132 0.20 -1.3
136,701 + GFF132 0.20 -1.3
136,723 + GFF132 0.22 -1.0
136,723 + GFF132 0.22 -0.8
136,797 + GFF132 0.29 -0.6
136,928 + GFF132 0.41 -1.8
136,929 - GFF132 0.41 +0.0
136,944 - GFF132 0.43 -0.5
137,044 + GFF132 0.52 -1.6
137,045 - GFF132 0.52 -2.9
137,045 - GFF132 0.52 -1.6
137,045 - GFF132 0.52 -0.4
137,069 + GFF132 0.54 -0.2
137,089 - GFF132 0.56 -0.3
137,089 - GFF132 0.56 -1.0
137,089 - GFF132 0.56 -0.6
137,095 - GFF132 0.57 -1.8
137,309 + GFF132 0.77 -0.5
137,309 + GFF132 0.77 -0.9
137,313 + GFF132 0.77 -0.7
137,313 + GFF132 0.77 +0.1
137,313 + GFF132 0.77 +0.3
137,313 + GFF132 0.77 -0.3
137,313 + GFF132 0.77 +0.6
137,314 - GFF132 0.77 +0.7
137,314 - GFF132 0.77 -1.0
137,314 - GFF132 0.77 -0.9
137,314 - GFF132 0.77 -0.6
137,406 - GFF132 0.86 -1.3
137,525 + -0.2
137,554 + -0.9
137,554 + +0.3
137,622 + +0.4
137,622 + +0.0
137,622 + -0.8
137,623 - +0.5
137,623 - +0.8
137,623 - -1.0
137,633 + -1.3
137,633 + -1.0
137,633 + -0.5
137,633 + +0.1
137,634 - +0.3
137,634 - +0.3
137,716 + GFF133 0.29 +0.4
137,716 + GFF133 0.29 -0.1
137,750 - GFF133 0.39 -0.6
137,750 - GFF133 0.39 -0.1
137,750 - GFF133 0.39 -0.5
137,759 + GFF133 0.41 +1.0
137,798 - GFF133 0.53 +0.0
137,814 + GFF133 0.57 +0.0
137,828 + GFF133 0.61 +0.7
137,828 + GFF133 0.61 -0.1
137,828 + GFF133 0.61 +0.3
137,881 + GFF133 0.77 -0.7
137,971 + +0.3
137,971 + -0.3
137,971 + -1.3
137,989 - +1.0
138,065 + GFF134 0.22 -1.1
138,066 - GFF134 0.22 -0.4
138,066 - GFF134 0.22 +1.5
138,164 + GFF134 0.45 -0.3
138,164 + GFF134 0.45 -0.4
138,164 + GFF134 0.45 -0.1
138,164 + GFF134 0.45 +1.3
138,165 - GFF134 0.45 +0.3
138,165 - GFF134 0.45 +0.0
138,181 + GFF134 0.49 -0.3
138,336 + GFF134 0.85 -1.3
138,336 + GFF134 0.85 -0.1
138,336 + GFF134 0.85 -0.8
138,336 + GFF134 0.85 +0.8
138,336 + GFF134 0.85 -1.1
138,337 - GFF134 0.86 -1.2
138,337 - GFF134 0.86 +0.2
138,337 - GFF134 0.86 -1.5
138,337 - GFF134 0.86 -0.7
138,351 + GFF134 0.89 -1.3
138,352 - GFF134 0.89 -1.0
138,380 + -0.7
138,404 + -1.0
138,426 + -0.1
138,426 + +0.0
138,427 - -0.3
138,427 - -0.3
138,432 + -1.3
138,432 + -0.3
138,437 + +1.3
138,438 - -1.8
138,438 - -1.0
138,438 - -0.2
138,438 - -0.4
138,438 - +0.0
138,438 - +0.6
138,438 - -1.0
138,438 - +0.3
138,496 + -0.9
138,496 + +0.3
138,497 - +0.0
138,497 - -0.3
138,497 - +0.1
138,498 + +0.0
138,498 + -0.8
138,499 - +0.0
138,499 - -0.4
138,499 - +0.5
138,501 + -1.0
138,502 - -1.2

Or see this region's nucleotide sequence