Strain Fitness in Methylophilus sp. DMC18 around GFF131

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF129 and GFF130 are separated by 24 nucleotidesGFF130 and GFF131 are separated by 20 nucleotidesGFF131 and GFF132 are separated by 1 nucleotides GFF129 - Porin P, at 133,474 to 135,003 GFF129 GFF130 - Molybdate-binding protein ModA, at 135,028 to 135,786 GFF130 GFF131 - Sulfate transport system permease protein CysT, at 135,807 to 136,484 GFF131 GFF132 - Vitamin B12 import ATP-binding protein BtuD, at 136,486 to 137,556 GFF132 Position (kb) 135 136 137Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 134.812 kb on - strand, within GFF129at 134.863 kb on + strandat 134.863 kb on + strandat 134.864 kb on - strandat 134.864 kb on - strandat 134.864 kb on - strandat 134.884 kb on + strandat 134.884 kb on + strandat 134.885 kb on - strandat 134.885 kb on - strandat 134.885 kb on - strandat 134.885 kb on - strandat 134.950 kb on + strandat 134.952 kb on + strandat 134.953 kb on - strandat 135.002 kb on - strandat 135.130 kb on + strand, within GFF130at 135.130 kb on + strand, within GFF130at 135.130 kb on + strand, within GFF130at 135.131 kb on - strand, within GFF130at 135.159 kb on + strand, within GFF130at 135.160 kb on - strand, within GFF130at 135.248 kb on + strand, within GFF130at 135.248 kb on + strand, within GFF130at 135.248 kb on + strand, within GFF130at 135.248 kb on + strand, within GFF130at 135.249 kb on - strand, within GFF130at 135.249 kb on - strand, within GFF130at 135.286 kb on + strand, within GFF130at 135.286 kb on + strand, within GFF130at 135.286 kb on + strand, within GFF130at 135.286 kb on + strand, within GFF130at 135.286 kb on + strand, within GFF130at 135.286 kb on + strand, within GFF130at 135.287 kb on - strand, within GFF130at 135.287 kb on - strand, within GFF130at 135.288 kb on + strand, within GFF130at 135.344 kb on + strand, within GFF130at 135.345 kb on - strand, within GFF130at 135.345 kb on - strand, within GFF130at 135.475 kb on + strand, within GFF130at 135.476 kb on - strand, within GFF130at 135.541 kb on + strand, within GFF130at 135.541 kb on + strand, within GFF130at 135.606 kb on + strand, within GFF130at 135.618 kb on + strand, within GFF130at 135.618 kb on + strand, within GFF130at 135.646 kb on + strand, within GFF130at 135.647 kb on - strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.690 kb on - strand, within GFF130at 135.690 kb on - strand, within GFF130at 135.690 kb on - strand, within GFF130at 135.690 kb on - strand, within GFF130at 135.693 kb on + strand, within GFF130at 135.693 kb on + strand, within GFF130at 135.774 kb on + strandat 135.774 kb on + strandat 135.774 kb on + strandat 135.775 kb on - strandat 135.775 kb on - strandat 135.811 kb on + strandat 135.812 kb on - strandat 135.824 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.827 kb on - strandat 135.827 kb on - strandat 135.827 kb on - strandat 135.827 kb on - strandat 135.874 kb on + strandat 135.875 kb on - strand, within GFF131at 135.887 kb on - strand, within GFF131at 135.996 kb on + strand, within GFF131at 135.996 kb on + strand, within GFF131at 135.996 kb on + strand, within GFF131at 135.996 kb on + strand, within GFF131at 135.997 kb on - strand, within GFF131at 135.997 kb on - strand, within GFF131at 135.997 kb on - strand, within GFF131at 135.997 kb on - strand, within GFF131at 136.103 kb on + strand, within GFF131at 136.105 kb on + strand, within GFF131at 136.105 kb on + strand, within GFF131at 136.105 kb on + strand, within GFF131at 136.106 kb on - strand, within GFF131at 136.106 kb on - strand, within GFF131at 136.107 kb on + strand, within GFF131at 136.107 kb on + strand, within GFF131at 136.108 kb on - strand, within GFF131at 136.121 kb on + strand, within GFF131at 136.177 kb on + strand, within GFF131at 136.262 kb on + strand, within GFF131at 136.262 kb on + strand, within GFF131at 136.262 kb on + strand, within GFF131at 136.263 kb on - strand, within GFF131at 136.303 kb on + strand, within GFF131at 136.303 kb on + strand, within GFF131at 136.304 kb on - strand, within GFF131at 136.312 kb on + strand, within GFF131at 136.359 kb on + strand, within GFF131at 136.385 kb on + strand, within GFF131at 136.385 kb on + strand, within GFF131at 136.386 kb on - strand, within GFF131at 136.386 kb on - strand, within GFF131at 136.397 kb on + strand, within GFF131at 136.397 kb on + strand, within GFF131at 136.398 kb on - strand, within GFF131at 136.530 kb on + strandat 136.541 kb on + strandat 136.541 kb on + strandat 136.541 kb on + strandat 136.542 kb on - strandat 136.542 kb on - strandat 136.620 kb on + strand, within GFF132at 136.651 kb on + strand, within GFF132at 136.651 kb on + strand, within GFF132at 136.651 kb on + strand, within GFF132at 136.690 kb on + strand, within GFF132at 136.690 kb on + strand, within GFF132at 136.697 kb on + strand, within GFF132at 136.698 kb on - strand, within GFF132at 136.701 kb on + strand, within GFF132at 136.701 kb on + strand, within GFF132at 136.701 kb on + strand, within GFF132at 136.701 kb on + strand, within GFF132at 136.701 kb on + strand, within GFF132at 136.723 kb on + strand, within GFF132at 136.723 kb on + strand, within GFF132at 136.797 kb on + strand, within GFF132at 136.928 kb on + strand, within GFF132at 136.929 kb on - strand, within GFF132at 136.944 kb on - strand, within GFF132at 137.044 kb on + strand, within GFF132at 137.045 kb on - strand, within GFF132at 137.045 kb on - strand, within GFF132at 137.045 kb on - strand, within GFF132at 137.069 kb on + strand, within GFF132at 137.089 kb on - strand, within GFF132at 137.089 kb on - strand, within GFF132at 137.089 kb on - strand, within GFF132at 137.095 kb on - strand, within GFF132at 137.309 kb on + strand, within GFF132at 137.309 kb on + strand, within GFF132at 137.313 kb on + strand, within GFF132at 137.313 kb on + strand, within GFF132at 137.313 kb on + strand, within GFF132at 137.313 kb on + strand, within GFF132at 137.313 kb on + strand, within GFF132at 137.314 kb on - strand, within GFF132at 137.314 kb on - strand, within GFF132at 137.314 kb on - strand, within GFF132at 137.314 kb on - strand, within GFF132at 137.406 kb on - strand, within GFF132

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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134,812 - GFF129 0.87 +0.0
134,863 + +0.6
134,863 + -0.3
134,864 - +0.3
134,864 - -0.2
134,864 - -0.7
134,884 + +0.0
134,884 + +0.2
134,885 - -0.2
134,885 - -1.2
134,885 - -0.8
134,885 - +0.3
134,950 + -0.8
134,952 + +0.0
134,953 - +0.0
135,002 - +0.6
135,130 + GFF130 0.13 -1.5
135,130 + GFF130 0.13 -1.0
135,130 + GFF130 0.13 -2.1
135,131 - GFF130 0.14 +0.5
135,159 + GFF130 0.17 -1.0
135,160 - GFF130 0.17 +0.3
135,248 + GFF130 0.29 -0.1
135,248 + GFF130 0.29 -0.5
135,248 + GFF130 0.29 -0.3
135,248 + GFF130 0.29 -1.6
135,249 - GFF130 0.29 -2.0
135,249 - GFF130 0.29 -2.2
135,286 + GFF130 0.34 -1.1
135,286 + GFF130 0.34 -1.4
135,286 + GFF130 0.34 -0.4
135,286 + GFF130 0.34 -0.8
135,286 + GFF130 0.34 +0.2
135,286 + GFF130 0.34 -1.7
135,287 - GFF130 0.34 -0.9
135,287 - GFF130 0.34 -1.0
135,288 + GFF130 0.34 +0.6
135,344 + GFF130 0.42 -0.3
135,345 - GFF130 0.42 -0.6
135,345 - GFF130 0.42 -2.3
135,475 + GFF130 0.59 -2.5
135,476 - GFF130 0.59 -1.0
135,541 + GFF130 0.68 -0.6
135,541 + GFF130 0.68 -0.6
135,606 + GFF130 0.76 -1.0
135,618 + GFF130 0.78 -1.0
135,618 + GFF130 0.78 -0.4
135,646 + GFF130 0.81 +0.2
135,647 - GFF130 0.82 -1.3
135,689 + GFF130 0.87 -1.0
135,689 + GFF130 0.87 -0.9
135,689 + GFF130 0.87 -0.8
135,689 + GFF130 0.87 +0.6
135,689 + GFF130 0.87 -2.8
135,689 + GFF130 0.87 -1.0
135,690 - GFF130 0.87 +0.7
135,690 - GFF130 0.87 -1.3
135,690 - GFF130 0.87 +0.3
135,690 - GFF130 0.87 -2.2
135,693 + GFF130 0.88 -1.3
135,693 + GFF130 0.88 -1.8
135,774 + +1.3
135,774 + -1.9
135,774 + -0.3
135,775 - -1.0
135,775 - +0.2
135,811 + +1.2
135,812 - -1.8
135,824 + -0.4
135,826 + -0.3
135,826 + -2.2
135,826 + -1.3
135,826 + -0.4
135,826 + -0.3
135,826 + -0.6
135,826 + -0.4
135,826 + +0.1
135,827 - -1.9
135,827 - -1.6
135,827 - -0.6
135,827 - -1.3
135,874 + -2.3
135,875 - GFF131 0.10 -2.6
135,887 - GFF131 0.12 -1.8
135,996 + GFF131 0.28 -0.1
135,996 + GFF131 0.28 -0.3
135,996 + GFF131 0.28 -2.2
135,996 + GFF131 0.28 -1.0
135,997 - GFF131 0.28 -0.8
135,997 - GFF131 0.28 +0.0
135,997 - GFF131 0.28 +0.0
135,997 - GFF131 0.28 -0.8
136,103 + GFF131 0.44 -1.3
136,105 + GFF131 0.44 -0.6
136,105 + GFF131 0.44 -1.2
136,105 + GFF131 0.44 -1.5
136,106 - GFF131 0.44 +0.6
136,106 - GFF131 0.44 -1.6
136,107 + GFF131 0.44 -0.6
136,107 + GFF131 0.44 -2.8
136,108 - GFF131 0.44 -1.3
136,121 + GFF131 0.46 -1.7
136,177 + GFF131 0.55 -1.8
136,262 + GFF131 0.67 -0.6
136,262 + GFF131 0.67 -2.2
136,262 + GFF131 0.67 -1.3
136,263 - GFF131 0.67 -0.7
136,303 + GFF131 0.73 -1.2
136,303 + GFF131 0.73 -0.6
136,304 - GFF131 0.73 +0.0
136,312 + GFF131 0.74 -1.3
136,359 + GFF131 0.81 -0.6
136,385 + GFF131 0.85 -0.3
136,385 + GFF131 0.85 -1.3
136,386 - GFF131 0.85 -1.3
136,386 - GFF131 0.85 -0.7
136,397 + GFF131 0.87 -0.6
136,397 + GFF131 0.87 -0.2
136,398 - GFF131 0.87 -1.4
136,530 + -0.2
136,541 + -1.0
136,541 + -4.0
136,541 + -3.1
136,542 - -1.2
136,542 - -1.6
136,620 + GFF132 0.13 -2.2
136,651 + GFF132 0.15 -1.3
136,651 + GFF132 0.15 +0.0
136,651 + GFF132 0.15 -1.0
136,690 + GFF132 0.19 -2.0
136,690 + GFF132 0.19 -0.8
136,697 + GFF132 0.20 -0.8
136,698 - GFF132 0.20 -1.3
136,701 + GFF132 0.20 -1.0
136,701 + GFF132 0.20 -0.6
136,701 + GFF132 0.20 -1.0
136,701 + GFF132 0.20 -1.3
136,701 + GFF132 0.20 -1.3
136,723 + GFF132 0.22 -1.0
136,723 + GFF132 0.22 -0.8
136,797 + GFF132 0.29 -0.6
136,928 + GFF132 0.41 -1.8
136,929 - GFF132 0.41 +0.0
136,944 - GFF132 0.43 -0.5
137,044 + GFF132 0.52 -1.6
137,045 - GFF132 0.52 -2.9
137,045 - GFF132 0.52 -1.6
137,045 - GFF132 0.52 -0.4
137,069 + GFF132 0.54 -0.2
137,089 - GFF132 0.56 -0.3
137,089 - GFF132 0.56 -1.0
137,089 - GFF132 0.56 -0.6
137,095 - GFF132 0.57 -1.8
137,309 + GFF132 0.77 -0.5
137,309 + GFF132 0.77 -0.9
137,313 + GFF132 0.77 -0.7
137,313 + GFF132 0.77 +0.1
137,313 + GFF132 0.77 +0.3
137,313 + GFF132 0.77 -0.3
137,313 + GFF132 0.77 +0.6
137,314 - GFF132 0.77 +0.7
137,314 - GFF132 0.77 -1.0
137,314 - GFF132 0.77 -0.9
137,314 - GFF132 0.77 -0.6
137,406 - GFF132 0.86 -1.3

Or see this region's nucleotide sequence