Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1304 and GFF1305 are separated by 136 nucleotides GFF1305 and GFF1306 are separated by 120 nucleotides
GFF1304 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 564,283 to 565,572
GFF1304
GFF1305 - Lon protease, at 565,709 to 568,141
GFF1305
GFF1306 - DNA-binding protein HU-beta, at 568,262 to 568,534
GFF1306
Position (kb) 565
566
567
568
569 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 564.757 kb on + strand, within GFF1304 at 564.757 kb on + strand, within GFF1304 at 564.757 kb on + strand, within GFF1304 at 564.757 kb on + strand, within GFF1304 at 564.811 kb on + strand, within GFF1304 at 564.811 kb on + strand, within GFF1304 at 564.811 kb on + strand, within GFF1304 at 564.812 kb on - strand, within GFF1304 at 564.844 kb on + strand, within GFF1304 at 564.844 kb on + strand, within GFF1304 at 564.844 kb on + strand, within GFF1304 at 564.844 kb on + strand, within GFF1304 at 564.846 kb on + strand, within GFF1304 at 564.846 kb on + strand, within GFF1304 at 564.993 kb on + strand, within GFF1304 at 564.993 kb on + strand, within GFF1304 at 565.023 kb on + strand, within GFF1304 at 565.277 kb on + strand, within GFF1304 at 565.306 kb on + strand, within GFF1304 at 565.306 kb on + strand, within GFF1304 at 565.306 kb on + strand, within GFF1304 at 565.306 kb on + strand, within GFF1304 at 565.306 kb on + strand, within GFF1304 at 565.306 kb on + strand, within GFF1304 at 565.307 kb on - strand, within GFF1304 at 565.374 kb on + strand, within GFF1304 at 565.392 kb on + strand, within GFF1304 at 565.439 kb on + strand, within GFF1304 at 565.450 kb on + strand at 565.450 kb on + strand at 565.450 kb on + strand at 565.450 kb on + strand at 565.570 kb on + strand at 565.570 kb on + strand at 565.570 kb on + strand at 565.570 kb on + strand at 565.571 kb on - strand at 565.571 kb on - strand at 565.571 kb on - strand at 565.571 kb on - strand at 565.608 kb on + strand at 565.615 kb on + strand at 565.615 kb on + strand at 565.615 kb on + strand at 565.615 kb on + strand at 565.615 kb on + strand at 565.615 kb on + strand at 565.615 kb on + strand at 565.616 kb on - strand at 565.616 kb on - strand at 565.616 kb on - strand at 565.618 kb on + strand at 565.665 kb on + strand at 565.665 kb on + strand at 565.665 kb on + strand at 565.665 kb on + strand at 565.665 kb on + strand at 565.666 kb on - strand at 565.695 kb on + strand at 565.709 kb on - strand at 565.764 kb on + strand at 566.147 kb on + strand, within GFF1305 at 566.204 kb on - strand, within GFF1305 at 566.377 kb on + strand, within GFF1305 at 566.412 kb on - strand, within GFF1305 at 566.722 kb on + strand, within GFF1305 at 566.742 kb on + strand, within GFF1305 at 567.089 kb on + strand, within GFF1305 at 567.256 kb on + strand, within GFF1305 at 567.326 kb on + strand, within GFF1305 at 567.326 kb on + strand, within GFF1305 at 567.326 kb on + strand, within GFF1305 at 567.619 kb on + strand, within GFF1305 at 567.619 kb on + strand, within GFF1305 at 567.855 kb on + strand, within GFF1305 at 568.142 kb on + strand at 568.209 kb on + strand at 568.227 kb on + strand at 568.227 kb on + strand at 568.227 kb on + strand at 568.243 kb on + strand at 568.243 kb on + strand at 568.243 kb on + strand at 568.243 kb on + strand at 568.247 kb on + strand at 568.267 kb on + strand at 568.306 kb on + strand, within GFF1306 at 568.412 kb on + strand, within GFF1306 at 568.412 kb on + strand, within GFF1306 at 568.412 kb on + strand, within GFF1306 at 568.412 kb on + strand, within GFF1306 at 568.412 kb on + strand, within GFF1306 at 568.412 kb on + strand, within GFF1306 at 568.416 kb on + strand, within GFF1306 at 568.483 kb on + strand, within GFF1306 at 568.527 kb on + strand at 568.527 kb on + strand at 568.532 kb on + strand at 568.532 kb on + strand at 568.532 kb on + strand at 568.564 kb on + strand at 568.564 kb on + strand at 568.573 kb on + strand at 568.678 kb on + strand at 568.730 kb on + strand at 568.743 kb on + strand at 568.743 kb on + strand at 568.743 kb on + strand at 568.744 kb on - strand at 568.760 kb on + strand at 568.926 kb on + strand at 568.955 kb on + strand at 568.971 kb on + strand at 568.971 kb on + strand at 568.971 kb on + strand at 568.972 kb on - strand at 568.972 kb on - strand at 568.997 kb on + strand at 568.997 kb on + strand at 568.997 kb on + strand at 569.004 kb on - strand at 569.009 kb on + strand at 569.010 kb on - strand at 569.026 kb on + strand at 569.065 kb on + strand at 569.070 kb on + strand at 569.070 kb on + strand at 569.071 kb on - strand at 569.071 kb on - strand at 569.117 kb on - strand at 569.119 kb on + strand at 569.119 kb on + strand at 569.119 kb on + strand at 569.120 kb on - strand at 569.120 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 564,757 + GFF1304 0.37 -0.5 564,757 + GFF1304 0.37 -0.4 564,757 + GFF1304 0.37 -1.0 564,757 + GFF1304 0.37 -1.8 564,811 + GFF1304 0.41 -0.7 564,811 + GFF1304 0.41 -1.0 564,811 + GFF1304 0.41 -2.0 564,812 - GFF1304 0.41 -0.6 564,844 + GFF1304 0.43 -0.4 564,844 + GFF1304 0.43 +0.7 564,844 + GFF1304 0.43 +0.4 564,844 + GFF1304 0.43 -0.7 564,846 + GFF1304 0.44 +0.0 564,846 + GFF1304 0.44 -1.0 564,993 + GFF1304 0.55 -0.4 564,993 + GFF1304 0.55 +0.7 565,023 + GFF1304 0.57 +0.0 565,277 + GFF1304 0.77 -0.8 565,306 + GFF1304 0.79 -0.9 565,306 + GFF1304 0.79 +0.2 565,306 + GFF1304 0.79 -0.2 565,306 + GFF1304 0.79 -0.1 565,306 + GFF1304 0.79 +0.3 565,306 + GFF1304 0.79 +0.0 565,307 - GFF1304 0.79 -1.0 565,374 + GFF1304 0.85 +0.3 565,392 + GFF1304 0.86 +0.3 565,439 + GFF1304 0.90 +0.1 565,450 + -1.3 565,450 + -1.0 565,450 + -1.1 565,450 + -2.8 565,570 + -1.3 565,570 + -0.0 565,570 + +0.3 565,570 + -0.4 565,571 - -0.6 565,571 - -0.6 565,571 - +0.0 565,571 - -0.6 565,608 + +0.0 565,615 + -1.3 565,615 + +0.0 565,615 + -1.5 565,615 + -1.0 565,615 + -0.1 565,615 + -0.6 565,615 + -0.4 565,616 - -2.8 565,616 - +0.0 565,616 - -1.8 565,618 + -0.8 565,665 + -1.0 565,665 + -1.0 565,665 + +0.0 565,665 + -1.3 565,665 + -1.3 565,666 - -1.3 565,695 + -1.0 565,709 - -1.3 565,764 + +0.3 566,147 + GFF1305 0.18 -1.6 566,204 - GFF1305 0.20 -1.3 566,377 + GFF1305 0.27 -1.3 566,412 - GFF1305 0.29 -1.6 566,722 + GFF1305 0.42 -1.0 566,742 + GFF1305 0.42 -1.3 567,089 + GFF1305 0.57 -1.0 567,256 + GFF1305 0.64 -1.6 567,326 + GFF1305 0.66 -1.0 567,326 + GFF1305 0.66 -1.6 567,326 + GFF1305 0.66 -1.0 567,619 + GFF1305 0.79 -1.6 567,619 + GFF1305 0.79 -1.0 567,855 + GFF1305 0.88 -1.0 568,142 + +0.0 568,209 + -0.2 568,227 + +1.6 568,227 + -1.3 568,227 + +0.4 568,243 + +0.0 568,243 + -1.8 568,243 + -1.0 568,243 + -0.6 568,247 + -0.8 568,267 + +0.0 568,306 + GFF1306 0.16 -0.4 568,412 + GFF1306 0.55 -0.8 568,412 + GFF1306 0.55 -0.8 568,412 + GFF1306 0.55 +0.6 568,412 + GFF1306 0.55 -1.8 568,412 + GFF1306 0.55 -0.9 568,412 + GFF1306 0.55 +0.2 568,416 + GFF1306 0.56 -0.3 568,483 + GFF1306 0.81 +0.4 568,527 + -1.9 568,527 + -1.3 568,532 + -1.0 568,532 + -0.3 568,532 + -0.3 568,564 + +0.7 568,564 + -0.5 568,573 + -0.3 568,678 + -0.3 568,730 + -2.6 568,743 + -2.6 568,743 + +0.3 568,743 + +0.5 568,744 - +0.3 568,760 + +1.0 568,926 + -0.4 568,955 + +0.1 568,971 + -1.6 568,971 + -0.4 568,971 + +0.0 568,972 - -0.4 568,972 - +0.6 568,997 + -1.3 568,997 + +1.0 568,997 + +0.2 569,004 - +0.0 569,009 + -0.3 569,010 - -0.6 569,026 + -0.1 569,065 + -1.0 569,070 + +0.2 569,070 + -0.8 569,071 - -0.5 569,071 - -0.1 569,117 - -0.2 569,119 + -1.3 569,119 + -1.5 569,119 + +0.6 569,120 - -0.6 569,120 - -1.2
Or see this region's nucleotide sequence