Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1301 and GFF1302 are separated by 335 nucleotides GFF1302 and GFF1303 are separated by 3 nucleotides GFF1303 and GFF1304 are separated by 27 nucleotides
GFF1301 - 2-iminobutanoate/2-iminopropanoate deaminase, at 561,584 to 561,958
GFF1301
GFF1302 - Trigger factor, at 562,294 to 563,604
GFF1302
GFF1303 - ATP-dependent Clp protease proteolytic subunit, at 563,608 to 564,255
GFF1303
GFF1304 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 564,283 to 565,572
GFF1304
Position (kb) 562
563
564 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 561.305 kb on + strand at 561.305 kb on + strand at 561.306 kb on - strand at 561.306 kb on - strand at 561.308 kb on - strand at 561.311 kb on - strand at 561.445 kb on + strand at 561.445 kb on + strand at 561.445 kb on + strand at 561.445 kb on + strand at 561.446 kb on - strand at 561.452 kb on + strand at 561.452 kb on + strand at 561.452 kb on + strand at 561.453 kb on - strand at 561.504 kb on + strand at 561.505 kb on - strand at 561.505 kb on - strand at 561.505 kb on - strand at 561.509 kb on + strand at 561.509 kb on + strand at 561.510 kb on - strand at 561.510 kb on - strand at 561.519 kb on + strand at 561.589 kb on + strand at 561.590 kb on - strand at 561.590 kb on - strand at 561.594 kb on + strand at 561.595 kb on - strand at 561.596 kb on - strand at 561.655 kb on + strand, within GFF1301 at 561.655 kb on + strand, within GFF1301 at 561.656 kb on - strand, within GFF1301 at 561.662 kb on + strand, within GFF1301 at 561.662 kb on + strand, within GFF1301 at 561.662 kb on + strand, within GFF1301 at 561.664 kb on + strand, within GFF1301 at 561.664 kb on + strand, within GFF1301 at 561.665 kb on - strand, within GFF1301 at 561.665 kb on - strand, within GFF1301 at 561.665 kb on - strand, within GFF1301 at 561.715 kb on + strand, within GFF1301 at 561.738 kb on + strand, within GFF1301 at 561.738 kb on + strand, within GFF1301 at 561.738 kb on + strand, within GFF1301 at 561.738 kb on + strand, within GFF1301 at 561.738 kb on + strand, within GFF1301 at 561.739 kb on - strand, within GFF1301 at 561.739 kb on - strand, within GFF1301 at 561.758 kb on - strand, within GFF1301 at 561.851 kb on + strand, within GFF1301 at 561.851 kb on + strand, within GFF1301 at 561.851 kb on + strand, within GFF1301 at 561.852 kb on - strand, within GFF1301 at 561.956 kb on + strand at 561.957 kb on - strand at 561.978 kb on + strand at 561.978 kb on + strand at 561.978 kb on + strand at 561.979 kb on - strand at 561.979 kb on - strand at 562.028 kb on + strand at 562.028 kb on + strand at 562.028 kb on + strand at 562.028 kb on + strand at 562.028 kb on + strand at 562.029 kb on - strand at 562.029 kb on - strand at 562.029 kb on - strand at 562.029 kb on - strand at 562.035 kb on + strand at 562.036 kb on - strand at 562.036 kb on - strand at 562.036 kb on - strand at 562.069 kb on + strand at 562.069 kb on + strand at 562.069 kb on + strand at 562.070 kb on - strand at 562.117 kb on + strand at 562.117 kb on + strand at 562.117 kb on + strand at 562.117 kb on + strand at 562.118 kb on - strand at 562.118 kb on - strand at 562.224 kb on + strand at 562.250 kb on + strand at 562.265 kb on + strand at 562.468 kb on + strand, within GFF1302 at 562.468 kb on + strand, within GFF1302 at 562.612 kb on + strand, within GFF1302 at 562.620 kb on + strand, within GFF1302 at 562.750 kb on + strand, within GFF1302 at 562.836 kb on + strand, within GFF1302 at 563.132 kb on + strand, within GFF1302 at 563.417 kb on + strand, within GFF1302 at 563.470 kb on + strand, within GFF1302 at 563.555 kb on + strand at 563.571 kb on + strand at 563.602 kb on + strand at 563.602 kb on + strand at 564.243 kb on + strand at 564.253 kb on + strand at 564.253 kb on + strand at 564.264 kb on + strand at 564.264 kb on + strand at 564.264 kb on + strand at 564.268 kb on + strand at 564.268 kb on + strand at 564.279 kb on + strand at 564.279 kb on + strand at 564.314 kb on + strand at 564.314 kb on + strand at 564.314 kb on + strand at 564.314 kb on + strand at 564.314 kb on + strand at 564.314 kb on + strand at 564.316 kb on + strand at 564.316 kb on + strand at 564.316 kb on + strand at 564.316 kb on + strand at 564.316 kb on + strand at 564.316 kb on + strand at 564.316 kb on + strand at 564.316 kb on + strand at 564.316 kb on + strand at 564.316 kb on + strand at 564.317 kb on - strand at 564.381 kb on + strand at 564.381 kb on + strand at 564.381 kb on + strand at 564.381 kb on + strand at 564.381 kb on + strand at 564.404 kb on + strand at 564.404 kb on + strand at 564.417 kb on + strand, within GFF1304 at 564.417 kb on + strand, within GFF1304 at 564.417 kb on + strand, within GFF1304 at 564.417 kb on + strand, within GFF1304 at 564.417 kb on + strand, within GFF1304 at 564.495 kb on + strand, within GFF1304 at 564.508 kb on + strand, within GFF1304 at 564.508 kb on + strand, within GFF1304 at 564.508 kb on + strand, within GFF1304 at 564.508 kb on + strand, within GFF1304 at 564.508 kb on + strand, within GFF1304 at 564.508 kb on + strand, within GFF1304 at 564.508 kb on + strand, within GFF1304 at 564.508 kb on + strand, within GFF1304 at 564.508 kb on + strand, within GFF1304 at 564.508 kb on + strand, within GFF1304 at 564.524 kb on + strand, within GFF1304 at 564.556 kb on + strand, within GFF1304 at 564.556 kb on + strand, within GFF1304 at 564.556 kb on + strand, within GFF1304 at 564.556 kb on + strand, within GFF1304 at 564.580 kb on + strand, within GFF1304 at 564.580 kb on + strand, within GFF1304 at 564.582 kb on + strand, within GFF1304
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 561,305 + -0.2 561,305 + -1.3 561,306 - -1.0 561,306 - -1.8 561,308 - -1.0 561,311 - -1.0 561,445 + -1.2 561,445 + -0.2 561,445 + +0.0 561,445 + +1.0 561,446 - -2.0 561,452 + -0.9 561,452 + -0.3 561,452 + +0.7 561,453 - +0.6 561,504 + -0.6 561,505 - -1.7 561,505 - -0.5 561,505 - -0.7 561,509 + +0.0 561,509 + -1.4 561,510 - +0.0 561,510 - -1.5 561,519 + -1.6 561,589 + -1.0 561,590 - -1.0 561,590 - -0.8 561,594 + -2.8 561,595 - -1.7 561,596 - -0.6 561,655 + GFF1301 0.19 -1.3 561,655 + GFF1301 0.19 -1.0 561,656 - GFF1301 0.19 -1.0 561,662 + GFF1301 0.21 -1.7 561,662 + GFF1301 0.21 -0.3 561,662 + GFF1301 0.21 -1.6 561,664 + GFF1301 0.21 -0.4 561,664 + GFF1301 0.21 -2.2 561,665 - GFF1301 0.22 +0.0 561,665 - GFF1301 0.22 -1.8 561,665 - GFF1301 0.22 +0.0 561,715 + GFF1301 0.35 -1.8 561,738 + GFF1301 0.41 -0.6 561,738 + GFF1301 0.41 -1.3 561,738 + GFF1301 0.41 +0.3 561,738 + GFF1301 0.41 -2.0 561,738 + GFF1301 0.41 -2.3 561,739 - GFF1301 0.41 -1.0 561,739 - GFF1301 0.41 -0.7 561,758 - GFF1301 0.46 -1.0 561,851 + GFF1301 0.71 -1.0 561,851 + GFF1301 0.71 +0.4 561,851 + GFF1301 0.71 -0.8 561,852 - GFF1301 0.71 -1.0 561,956 + -1.6 561,957 - -0.4 561,978 + -0.6 561,978 + -0.8 561,978 + -0.9 561,979 - +0.6 561,979 - -0.3 562,028 + -1.0 562,028 + -0.6 562,028 + -1.4 562,028 + +0.0 562,028 + -0.3 562,029 - -2.0 562,029 - -1.0 562,029 - -0.7 562,029 - +0.4 562,035 + +0.8 562,036 - +1.0 562,036 - -0.6 562,036 - +0.4 562,069 + -0.3 562,069 + +1.3 562,069 + +1.0 562,070 - +0.0 562,117 + +0.0 562,117 + -0.2 562,117 + +0.5 562,117 + +1.0 562,118 - -0.7 562,118 - +0.0 562,224 + -1.3 562,250 + -1.3 562,265 + -1.3 562,468 + GFF1302 0.13 -1.0 562,468 + GFF1302 0.13 +0.6 562,612 + GFF1302 0.24 -1.0 562,620 + GFF1302 0.25 -0.8 562,750 + GFF1302 0.35 -1.0 562,836 + GFF1302 0.41 -1.0 563,132 + GFF1302 0.64 -1.8 563,417 + GFF1302 0.86 -1.8 563,470 + GFF1302 0.90 -2.0 563,555 + +0.0 563,571 + -0.4 563,602 + -1.0 563,602 + +0.6 564,243 + -0.5 564,253 + -0.7 564,253 + -0.3 564,264 + +0.4 564,264 + -1.2 564,264 + +0.5 564,268 + -0.7 564,268 + -0.6 564,279 + +0.6 564,279 + -0.2 564,314 + +0.9 564,314 + -0.8 564,314 + -1.6 564,314 + -0.4 564,314 + -1.0 564,314 + +0.0 564,316 + +0.0 564,316 + -1.3 564,316 + -0.2 564,316 + -1.4 564,316 + -0.5 564,316 + +0.3 564,316 + -0.2 564,316 + +0.2 564,316 + -1.0 564,316 + -2.0 564,317 - -0.5 564,381 + -1.1 564,381 + -0.4 564,381 + -0.3 564,381 + +0.4 564,381 + -0.1 564,404 + -0.5 564,404 + +0.0 564,417 + GFF1304 0.10 +0.5 564,417 + GFF1304 0.10 -0.9 564,417 + GFF1304 0.10 +1.2 564,417 + GFF1304 0.10 -0.6 564,417 + GFF1304 0.10 -1.1 564,495 + GFF1304 0.16 -1.8 564,508 + GFF1304 0.17 -1.2 564,508 + GFF1304 0.17 -0.4 564,508 + GFF1304 0.17 -1.6 564,508 + GFF1304 0.17 -0.3 564,508 + GFF1304 0.17 -0.7 564,508 + GFF1304 0.17 -0.4 564,508 + GFF1304 0.17 -1.1 564,508 + GFF1304 0.17 -1.4 564,508 + GFF1304 0.17 -0.2 564,508 + GFF1304 0.17 +0.5 564,524 + GFF1304 0.19 -1.0 564,556 + GFF1304 0.21 -0.2 564,556 + GFF1304 0.21 +0.1 564,556 + GFF1304 0.21 +0.3 564,556 + GFF1304 0.21 +0.3 564,580 + GFF1304 0.23 -0.5 564,580 + GFF1304 0.23 -1.3 564,582 + GFF1304 0.23 -1.3
Or see this region's nucleotide sequence