Strain Fitness in Methylophilus sp. DMC18 around GFF1281

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1280 and GFF1281 are separated by 9 nucleotidesGFF1281 and GFF1282 are separated by 377 nucleotides GFF1280 - ATP-dependent RNA helicase RhlE, at 536,196 to 537,647 GFF1280 GFF1281 - ATP-dependent RNA helicase RhlE, at 537,657 to 539,207 GFF1281 GFF1282 - GTP-binding protein TypA/BipA, at 539,585 to 541,393 GFF1282 Position (kb) 537 538 539 540Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 536.665 kb on + strand, within GFF1280at 536.666 kb on - strand, within GFF1280at 536.670 kb on - strand, within GFF1280at 536.670 kb on - strand, within GFF1280at 536.808 kb on - strand, within GFF1280at 536.897 kb on - strand, within GFF1280at 536.914 kb on - strand, within GFF1280at 537.015 kb on - strand, within GFF1280at 537.126 kb on - strand, within GFF1280at 537.126 kb on - strand, within GFF1280at 537.126 kb on - strand, within GFF1280at 537.126 kb on - strand, within GFF1280at 537.126 kb on - strand, within GFF1280at 537.126 kb on - strand, within GFF1280at 537.175 kb on - strand, within GFF1280at 537.175 kb on - strand, within GFF1280at 537.175 kb on - strand, within GFF1280at 537.175 kb on - strand, within GFF1280at 537.184 kb on - strand, within GFF1280at 537.264 kb on - strand, within GFF1280at 537.282 kb on - strand, within GFF1280at 537.282 kb on - strand, within GFF1280at 537.286 kb on - strand, within GFF1280at 537.286 kb on - strand, within GFF1280at 537.286 kb on - strand, within GFF1280at 537.286 kb on - strand, within GFF1280at 537.286 kb on - strand, within GFF1280at 537.286 kb on - strand, within GFF1280at 537.286 kb on - strand, within GFF1280at 537.296 kb on - strand, within GFF1280at 537.296 kb on - strand, within GFF1280at 537.296 kb on - strand, within GFF1280at 537.296 kb on - strand, within GFF1280at 537.306 kb on - strand, within GFF1280at 537.309 kb on - strand, within GFF1280at 537.332 kb on - strand, within GFF1280at 537.332 kb on - strand, within GFF1280at 537.332 kb on - strand, within GFF1280at 537.349 kb on + strand, within GFF1280at 537.350 kb on - strand, within GFF1280at 537.350 kb on - strand, within GFF1280at 537.350 kb on - strand, within GFF1280at 537.350 kb on - strand, within GFF1280at 537.350 kb on - strand, within GFF1280at 537.352 kb on - strand, within GFF1280at 537.352 kb on - strand, within GFF1280at 537.385 kb on - strand, within GFF1280at 537.439 kb on - strand, within GFF1280at 537.447 kb on - strand, within GFF1280at 537.567 kb on - strandat 537.567 kb on - strandat 537.567 kb on - strandat 537.569 kb on - strandat 537.628 kb on - strandat 537.648 kb on - strandat 537.648 kb on - strandat 537.648 kb on - strandat 537.653 kb on - strandat 537.659 kb on - strandat 537.854 kb on - strand, within GFF1281at 537.854 kb on - strand, within GFF1281at 537.854 kb on - strand, within GFF1281at 537.854 kb on - strand, within GFF1281at 537.854 kb on - strand, within GFF1281at 537.867 kb on - strand, within GFF1281at 537.867 kb on - strand, within GFF1281at 537.921 kb on - strand, within GFF1281at 538.014 kb on - strand, within GFF1281at 538.069 kb on - strand, within GFF1281at 538.125 kb on - strand, within GFF1281at 538.125 kb on - strand, within GFF1281at 538.125 kb on - strand, within GFF1281at 538.127 kb on - strand, within GFF1281at 538.225 kb on - strand, within GFF1281at 538.225 kb on - strand, within GFF1281at 538.225 kb on - strand, within GFF1281at 538.225 kb on - strand, within GFF1281at 538.225 kb on - strand, within GFF1281at 538.225 kb on - strand, within GFF1281at 538.225 kb on - strand, within GFF1281at 538.229 kb on - strand, within GFF1281at 538.229 kb on - strand, within GFF1281at 538.229 kb on - strand, within GFF1281at 538.229 kb on - strand, within GFF1281at 538.229 kb on - strand, within GFF1281at 538.229 kb on - strand, within GFF1281at 538.229 kb on - strand, within GFF1281at 538.229 kb on - strand, within GFF1281at 538.229 kb on - strand, within GFF1281at 538.256 kb on - strand, within GFF1281at 538.260 kb on - strand, within GFF1281at 538.275 kb on - strand, within GFF1281at 538.275 kb on - strand, within GFF1281at 538.275 kb on - strand, within GFF1281at 538.282 kb on - strand, within GFF1281at 538.282 kb on - strand, within GFF1281at 538.282 kb on - strand, within GFF1281at 538.282 kb on - strand, within GFF1281at 538.282 kb on - strand, within GFF1281at 538.282 kb on - strand, within GFF1281at 538.315 kb on - strand, within GFF1281at 538.327 kb on - strand, within GFF1281at 538.403 kb on + strand, within GFF1281at 538.418 kb on - strand, within GFF1281at 538.418 kb on - strand, within GFF1281at 538.418 kb on - strand, within GFF1281at 538.418 kb on - strand, within GFF1281at 538.418 kb on - strand, within GFF1281at 538.418 kb on - strand, within GFF1281at 538.418 kb on - strand, within GFF1281at 538.467 kb on - strand, within GFF1281at 538.635 kb on - strand, within GFF1281at 538.663 kb on - strand, within GFF1281at 538.698 kb on - strand, within GFF1281at 538.698 kb on - strand, within GFF1281at 538.698 kb on - strand, within GFF1281at 538.698 kb on - strand, within GFF1281at 538.705 kb on - strand, within GFF1281at 538.705 kb on - strand, within GFF1281at 538.705 kb on - strand, within GFF1281at 538.705 kb on - strand, within GFF1281at 538.705 kb on - strand, within GFF1281at 538.705 kb on - strand, within GFF1281at 538.705 kb on - strand, within GFF1281at 538.705 kb on - strand, within GFF1281at 538.705 kb on - strand, within GFF1281at 538.716 kb on - strand, within GFF1281at 538.716 kb on - strand, within GFF1281at 538.926 kb on - strand, within GFF1281at 538.971 kb on - strand, within GFF1281at 538.971 kb on - strand, within GFF1281at 538.971 kb on - strand, within GFF1281at 538.971 kb on - strand, within GFF1281at 538.971 kb on - strand, within GFF1281at 538.971 kb on - strand, within GFF1281at 538.975 kb on - strand, within GFF1281at 538.983 kb on - strand, within GFF1281at 538.983 kb on - strand, within GFF1281at 539.043 kb on - strand, within GFF1281at 539.115 kb on - strandat 539.147 kb on - strandat 539.232 kb on - strandat 539.243 kb on + strandat 539.244 kb on - strandat 539.247 kb on - strandat 539.271 kb on + strandat 539.272 kb on - strandat 539.272 kb on - strandat 539.272 kb on - strandat 539.293 kb on + strandat 539.294 kb on - strandat 539.294 kb on - strandat 539.294 kb on - strandat 539.294 kb on - strandat 539.294 kb on - strandat 539.294 kb on - strandat 539.296 kb on + strandat 539.296 kb on + strandat 539.297 kb on - strandat 539.297 kb on - strandat 539.367 kb on - strandat 539.367 kb on - strandat 539.398 kb on - strandat 539.398 kb on - strandat 539.406 kb on + strandat 539.459 kb on + strandat 539.460 kb on - strandat 539.468 kb on - strandat 539.468 kb on - strandat 539.471 kb on - strandat 539.471 kb on - strandat 539.471 kb on - strandat 539.490 kb on - strandat 539.504 kb on + strandat 539.504 kb on + strandat 539.505 kb on - strandat 539.532 kb on - strandat 539.535 kb on + strandat 539.614 kb on + strandat 539.614 kb on + strandat 539.614 kb on + strandat 539.635 kb on + strandat 539.658 kb on + strandat 539.658 kb on + strandat 539.658 kb on + strandat 539.658 kb on + strandat 539.658 kb on + strandat 539.659 kb on - strandat 539.777 kb on + strand, within GFF1282at 539.777 kb on + strand, within GFF1282at 539.777 kb on + strand, within GFF1282at 539.777 kb on + strand, within GFF1282at 539.778 kb on - strand, within GFF1282at 539.791 kb on + strand, within GFF1282at 539.791 kb on + strand, within GFF1282at 539.797 kb on + strand, within GFF1282at 539.847 kb on + strand, within GFF1282at 539.868 kb on + strand, within GFF1282at 539.868 kb on + strand, within GFF1282at 539.940 kb on + strand, within GFF1282at 539.953 kb on + strand, within GFF1282at 539.954 kb on - strand, within GFF1282at 539.965 kb on + strand, within GFF1282at 539.973 kb on + strand, within GFF1282at 539.973 kb on + strand, within GFF1282at 540.057 kb on + strand, within GFF1282at 540.057 kb on + strand, within GFF1282at 540.058 kb on - strand, within GFF1282at 540.074 kb on + strand, within GFF1282at 540.074 kb on + strand, within GFF1282at 540.074 kb on + strand, within GFF1282at 540.074 kb on + strand, within GFF1282at 540.074 kb on + strand, within GFF1282at 540.074 kb on + strand, within GFF1282at 540.075 kb on - strand, within GFF1282at 540.075 kb on - strand, within GFF1282at 540.130 kb on + strand, within GFF1282

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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536,665 + GFF1280 0.32 -0.3
536,666 - GFF1280 0.32 -2.0
536,670 - GFF1280 0.33 -0.6
536,670 - GFF1280 0.33 -1.8
536,808 - GFF1280 0.42 -0.6
536,897 - GFF1280 0.48 +0.0
536,914 - GFF1280 0.49 +0.1
537,015 - GFF1280 0.56 -0.1
537,126 - GFF1280 0.64 -0.3
537,126 - GFF1280 0.64 -0.1
537,126 - GFF1280 0.64 +0.1
537,126 - GFF1280 0.64 -0.8
537,126 - GFF1280 0.64 -0.9
537,126 - GFF1280 0.64 -0.3
537,175 - GFF1280 0.67 +0.1
537,175 - GFF1280 0.67 -0.8
537,175 - GFF1280 0.67 -0.5
537,175 - GFF1280 0.67 -0.8
537,184 - GFF1280 0.68 -0.2
537,264 - GFF1280 0.74 +0.6
537,282 - GFF1280 0.75 -1.6
537,282 - GFF1280 0.75 -0.4
537,286 - GFF1280 0.75 -1.0
537,286 - GFF1280 0.75 -0.5
537,286 - GFF1280 0.75 +0.6
537,286 - GFF1280 0.75 -1.6
537,286 - GFF1280 0.75 +0.3
537,286 - GFF1280 0.75 +0.1
537,286 - GFF1280 0.75 -0.7
537,296 - GFF1280 0.76 -2.2
537,296 - GFF1280 0.76 -0.7
537,296 - GFF1280 0.76 -0.4
537,296 - GFF1280 0.76 -1.2
537,306 - GFF1280 0.76 +0.7
537,309 - GFF1280 0.77 +0.6
537,332 - GFF1280 0.78 -0.5
537,332 - GFF1280 0.78 -0.3
537,332 - GFF1280 0.78 -0.6
537,349 + GFF1280 0.79 -1.0
537,350 - GFF1280 0.79 +0.0
537,350 - GFF1280 0.79 -0.6
537,350 - GFF1280 0.79 +1.5
537,350 - GFF1280 0.79 -0.5
537,350 - GFF1280 0.79 +0.0
537,352 - GFF1280 0.80 -1.3
537,352 - GFF1280 0.80 +0.1
537,385 - GFF1280 0.82 -0.6
537,439 - GFF1280 0.86 +0.3
537,447 - GFF1280 0.86 +0.8
537,567 - -1.0
537,567 - +1.0
537,567 - +0.0
537,569 - +0.6
537,628 - +0.0
537,648 - +0.5
537,648 - -1.1
537,648 - -0.6
537,653 - +0.4
537,659 - -0.3
537,854 - GFF1281 0.13 -0.2
537,854 - GFF1281 0.13 -0.8
537,854 - GFF1281 0.13 +1.8
537,854 - GFF1281 0.13 -0.5
537,854 - GFF1281 0.13 +0.6
537,867 - GFF1281 0.14 -0.7
537,867 - GFF1281 0.14 -1.1
537,921 - GFF1281 0.17 -0.1
538,014 - GFF1281 0.23 +1.3
538,069 - GFF1281 0.27 -0.4
538,125 - GFF1281 0.30 -0.8
538,125 - GFF1281 0.30 -0.6
538,125 - GFF1281 0.30 -2.5
538,127 - GFF1281 0.30 -2.6
538,225 - GFF1281 0.37 -2.8
538,225 - GFF1281 0.37 -0.3
538,225 - GFF1281 0.37 -0.6
538,225 - GFF1281 0.37 -0.2
538,225 - GFF1281 0.37 -1.0
538,225 - GFF1281 0.37 -0.8
538,225 - GFF1281 0.37 -1.8
538,229 - GFF1281 0.37 -1.6
538,229 - GFF1281 0.37 -1.2
538,229 - GFF1281 0.37 -0.8
538,229 - GFF1281 0.37 -1.2
538,229 - GFF1281 0.37 -0.6
538,229 - GFF1281 0.37 -1.2
538,229 - GFF1281 0.37 -0.6
538,229 - GFF1281 0.37 -0.3
538,229 - GFF1281 0.37 -1.3
538,256 - GFF1281 0.39 -1.2
538,260 - GFF1281 0.39 -0.8
538,275 - GFF1281 0.40 +1.0
538,275 - GFF1281 0.40 -1.3
538,275 - GFF1281 0.40 -0.2
538,282 - GFF1281 0.40 -0.9
538,282 - GFF1281 0.40 -1.6
538,282 - GFF1281 0.40 -2.5
538,282 - GFF1281 0.40 -1.3
538,282 - GFF1281 0.40 -1.8
538,282 - GFF1281 0.40 -1.0
538,315 - GFF1281 0.42 -2.0
538,327 - GFF1281 0.43 -0.3
538,403 + GFF1281 0.48 -1.6
538,418 - GFF1281 0.49 +0.7
538,418 - GFF1281 0.49 -2.2
538,418 - GFF1281 0.49 -1.0
538,418 - GFF1281 0.49 -1.0
538,418 - GFF1281 0.49 -0.3
538,418 - GFF1281 0.49 -1.3
538,418 - GFF1281 0.49 -0.3
538,467 - GFF1281 0.52 -1.3
538,635 - GFF1281 0.63 -0.8
538,663 - GFF1281 0.65 -1.3
538,698 - GFF1281 0.67 -1.8
538,698 - GFF1281 0.67 -1.8
538,698 - GFF1281 0.67 -1.8
538,698 - GFF1281 0.67 -0.8
538,705 - GFF1281 0.68 -2.0
538,705 - GFF1281 0.68 -1.0
538,705 - GFF1281 0.68 -0.3
538,705 - GFF1281 0.68 +0.0
538,705 - GFF1281 0.68 -1.0
538,705 - GFF1281 0.68 -0.9
538,705 - GFF1281 0.68 -1.6
538,705 - GFF1281 0.68 -1.6
538,705 - GFF1281 0.68 -1.3
538,716 - GFF1281 0.68 -2.7
538,716 - GFF1281 0.68 +0.0
538,926 - GFF1281 0.82 -1.3
538,971 - GFF1281 0.85 -0.8
538,971 - GFF1281 0.85 -0.3
538,971 - GFF1281 0.85 +0.0
538,971 - GFF1281 0.85 -1.3
538,971 - GFF1281 0.85 -2.0
538,971 - GFF1281 0.85 -1.6
538,975 - GFF1281 0.85 -1.0
538,983 - GFF1281 0.85 -2.0
538,983 - GFF1281 0.85 +0.7
539,043 - GFF1281 0.89 -1.0
539,115 - -1.3
539,147 - -0.1
539,232 - +0.6
539,243 + -1.0
539,244 - -1.6
539,247 - +0.6
539,271 + -1.1
539,272 - -0.4
539,272 - -1.0
539,272 - -0.9
539,293 + -1.0
539,294 - -1.4
539,294 - -0.4
539,294 - -0.6
539,294 - +0.3
539,294 - -1.0
539,294 - -0.8
539,296 + -2.5
539,296 + -1.3
539,297 - -0.3
539,297 - +0.0
539,367 - -1.3
539,367 - +0.6
539,398 - -1.3
539,398 - -1.0
539,406 + -1.0
539,459 + -2.3
539,460 - -0.4
539,468 - -0.3
539,468 - -1.0
539,471 - +0.2
539,471 - -0.3
539,471 - -1.3
539,490 - -1.3
539,504 + -2.9
539,504 + -1.0
539,505 - -0.8
539,532 - +0.4
539,535 + -1.3
539,614 + -0.6
539,614 + +0.6
539,614 + -1.0
539,635 + -1.8
539,658 + -1.1
539,658 + +0.6
539,658 + -2.4
539,658 + +0.4
539,658 + +0.6
539,659 - -1.0
539,777 + GFF1282 0.11 -0.3
539,777 + GFF1282 0.11 +0.0
539,777 + GFF1282 0.11 -2.5
539,777 + GFF1282 0.11 -0.6
539,778 - GFF1282 0.11 -0.6
539,791 + GFF1282 0.11 +0.4
539,791 + GFF1282 0.11 -1.3
539,797 + GFF1282 0.12 -0.4
539,847 + GFF1282 0.14 -1.3
539,868 + GFF1282 0.16 -0.3
539,868 + GFF1282 0.16 +0.0
539,940 + GFF1282 0.20 -1.3
539,953 + GFF1282 0.20 -1.0
539,954 - GFF1282 0.20 -1.5
539,965 + GFF1282 0.21 -1.8
539,973 + GFF1282 0.21 -0.4
539,973 + GFF1282 0.21 -1.0
540,057 + GFF1282 0.26 -0.5
540,057 + GFF1282 0.26 -1.0
540,058 - GFF1282 0.26 -0.6
540,074 + GFF1282 0.27 -1.6
540,074 + GFF1282 0.27 -1.3
540,074 + GFF1282 0.27 +0.7
540,074 + GFF1282 0.27 -0.4
540,074 + GFF1282 0.27 +0.0
540,074 + GFF1282 0.27 -1.0
540,075 - GFF1282 0.27 +0.0
540,075 - GFF1282 0.27 -0.3
540,130 + GFF1282 0.30 -0.4

Or see this region's nucleotide sequence