Strain Fitness in Methylophilus sp. DMC18 around GFF1276

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1274 and GFF1275 are separated by 52 nucleotidesGFF1275 and GFF1276 are separated by 31 nucleotidesGFF1276 and GFF1277 are separated by 17 nucleotides GFF1274 - tRNA(Ile)-lysidine synthase, at 528,818 to 530,269 GFF1274 GFF1275 - hypothetical protein, at 530,322 to 530,456 GFF1275 GFF1276 - Vitamin B12 transporter BtuB, at 530,488 to 532,848 GFF1276 GFF1277 - Regulatory protein AtoC, at 532,866 to 534,281 GFF1277 Position (kb) 530 531 532 533Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 530.277 kb on + strandat 530.277 kb on + strandat 530.278 kb on - strandat 530.280 kb on - strandat 530.421 kb on + strand, within GFF1275at 530.458 kb on + strandat 530.458 kb on + strandat 530.462 kb on + strandat 530.463 kb on - strandat 530.463 kb on - strandat 530.487 kb on + strandat 530.493 kb on + strandat 530.493 kb on + strandat 530.536 kb on + strandat 530.710 kb on + strandat 530.710 kb on + strandat 530.710 kb on + strandat 530.710 kb on + strandat 530.710 kb on + strandat 530.711 kb on - strandat 530.725 kb on - strand, within GFF1276at 530.725 kb on - strand, within GFF1276at 530.782 kb on + strand, within GFF1276at 530.782 kb on + strand, within GFF1276at 530.782 kb on + strand, within GFF1276at 530.783 kb on - strand, within GFF1276at 530.837 kb on - strand, within GFF1276at 530.837 kb on - strand, within GFF1276at 530.849 kb on + strand, within GFF1276at 530.849 kb on + strand, within GFF1276at 530.850 kb on - strand, within GFF1276at 531.068 kb on - strand, within GFF1276at 531.117 kb on + strand, within GFF1276at 531.141 kb on + strand, within GFF1276at 531.174 kb on + strand, within GFF1276at 531.175 kb on - strand, within GFF1276at 531.234 kb on + strand, within GFF1276at 531.303 kb on + strand, within GFF1276at 531.328 kb on - strand, within GFF1276at 531.341 kb on + strand, within GFF1276at 531.348 kb on + strand, within GFF1276at 531.361 kb on + strand, within GFF1276at 531.361 kb on + strand, within GFF1276at 531.383 kb on + strand, within GFF1276at 531.384 kb on - strand, within GFF1276at 531.397 kb on + strand, within GFF1276at 531.401 kb on - strand, within GFF1276at 531.414 kb on + strand, within GFF1276at 531.415 kb on - strand, within GFF1276at 531.437 kb on + strand, within GFF1276at 531.437 kb on + strand, within GFF1276at 531.437 kb on + strand, within GFF1276at 531.437 kb on + strand, within GFF1276at 531.438 kb on - strand, within GFF1276at 531.438 kb on - strand, within GFF1276at 531.486 kb on + strand, within GFF1276at 531.486 kb on + strand, within GFF1276at 531.492 kb on + strand, within GFF1276at 531.546 kb on - strand, within GFF1276at 531.567 kb on + strand, within GFF1276at 531.567 kb on + strand, within GFF1276at 531.567 kb on + strand, within GFF1276at 531.618 kb on + strand, within GFF1276at 531.618 kb on + strand, within GFF1276at 531.619 kb on - strand, within GFF1276at 531.646 kb on - strand, within GFF1276at 531.684 kb on - strand, within GFF1276at 531.721 kb on - strand, within GFF1276at 531.787 kb on - strand, within GFF1276at 531.929 kb on + strand, within GFF1276at 531.976 kb on + strand, within GFF1276at 531.976 kb on + strand, within GFF1276at 531.999 kb on + strand, within GFF1276at 531.999 kb on + strand, within GFF1276at 531.999 kb on + strand, within GFF1276at 532.000 kb on - strand, within GFF1276at 532.000 kb on - strand, within GFF1276at 532.041 kb on + strand, within GFF1276at 532.042 kb on - strand, within GFF1276at 532.099 kb on + strand, within GFF1276at 532.100 kb on - strand, within GFF1276at 532.156 kb on + strand, within GFF1276at 532.156 kb on + strand, within GFF1276at 532.161 kb on + strand, within GFF1276at 532.161 kb on + strand, within GFF1276at 532.162 kb on - strand, within GFF1276at 532.162 kb on - strand, within GFF1276at 532.162 kb on - strand, within GFF1276at 532.233 kb on + strand, within GFF1276at 532.233 kb on + strand, within GFF1276at 532.236 kb on + strand, within GFF1276at 532.236 kb on + strand, within GFF1276at 532.236 kb on + strand, within GFF1276at 532.284 kb on + strand, within GFF1276at 532.285 kb on - strand, within GFF1276at 532.314 kb on + strand, within GFF1276at 532.314 kb on + strand, within GFF1276at 532.314 kb on + strand, within GFF1276at 532.315 kb on - strand, within GFF1276at 532.330 kb on - strand, within GFF1276at 532.378 kb on - strand, within GFF1276at 532.378 kb on - strand, within GFF1276at 532.382 kb on + strand, within GFF1276at 532.429 kb on + strand, within GFF1276at 532.429 kb on + strand, within GFF1276at 532.474 kb on + strand, within GFF1276at 532.510 kb on - strand, within GFF1276at 532.510 kb on - strand, within GFF1276at 532.560 kb on + strand, within GFF1276at 532.560 kb on + strand, within GFF1276at 532.590 kb on + strand, within GFF1276at 532.590 kb on + strand, within GFF1276at 532.590 kb on + strand, within GFF1276at 532.591 kb on - strand, within GFF1276at 532.591 kb on - strand, within GFF1276at 532.616 kb on - strandat 532.656 kb on + strandat 532.656 kb on + strandat 532.657 kb on - strandat 532.678 kb on + strandat 532.678 kb on + strandat 532.679 kb on - strandat 532.720 kb on - strandat 532.731 kb on + strandat 532.752 kb on + strandat 532.752 kb on + strandat 532.846 kb on + strandat 532.846 kb on + strandat 532.850 kb on + strandat 532.895 kb on + strandat 532.907 kb on - strandat 533.035 kb on + strand, within GFF1277at 533.117 kb on + strand, within GFF1277at 533.130 kb on - strand, within GFF1277at 533.135 kb on + strand, within GFF1277at 533.135 kb on + strand, within GFF1277at 533.135 kb on + strand, within GFF1277at 533.136 kb on - strand, within GFF1277at 533.206 kb on - strand, within GFF1277at 533.236 kb on + strand, within GFF1277at 533.246 kb on + strand, within GFF1277at 533.246 kb on + strand, within GFF1277at 533.348 kb on + strand, within GFF1277at 533.349 kb on - strand, within GFF1277at 533.354 kb on + strand, within GFF1277at 533.385 kb on - strand, within GFF1277at 533.395 kb on + strand, within GFF1277at 533.435 kb on + strand, within GFF1277at 533.589 kb on - strand, within GFF1277at 533.639 kb on + strand, within GFF1277at 533.701 kb on + strand, within GFF1277at 533.702 kb on - strand, within GFF1277at 533.766 kb on - strand, within GFF1277at 533.788 kb on + strand, within GFF1277at 533.789 kb on - strand, within GFF1277at 533.790 kb on + strand, within GFF1277

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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530,277 + -0.2
530,277 + -1.3
530,278 - +0.0
530,280 - +0.2
530,421 + GFF1275 0.73 -0.4
530,458 + -1.6
530,458 + -1.0
530,462 + -1.5
530,463 - +1.0
530,463 - -1.0
530,487 + -1.8
530,493 + -1.3
530,493 + +0.3
530,536 + +1.0
530,710 + +0.0
530,710 + -0.6
530,710 + -2.1
530,710 + +0.0
530,710 + +1.0
530,711 - -0.3
530,725 - GFF1276 0.10 -1.3
530,725 - GFF1276 0.10 -1.0
530,782 + GFF1276 0.12 -1.8
530,782 + GFF1276 0.12 -1.3
530,782 + GFF1276 0.12 -0.6
530,783 - GFF1276 0.12 -0.6
530,837 - GFF1276 0.15 -0.6
530,837 - GFF1276 0.15 +0.3
530,849 + GFF1276 0.15 +0.6
530,849 + GFF1276 0.15 -1.0
530,850 - GFF1276 0.15 -0.4
531,068 - GFF1276 0.25 -0.8
531,117 + GFF1276 0.27 -0.8
531,141 + GFF1276 0.28 -0.5
531,174 + GFF1276 0.29 -0.8
531,175 - GFF1276 0.29 -0.3
531,234 + GFF1276 0.32 -1.2
531,303 + GFF1276 0.35 -1.0
531,328 - GFF1276 0.36 -1.0
531,341 + GFF1276 0.36 -1.8
531,348 + GFF1276 0.36 +0.5
531,361 + GFF1276 0.37 -1.3
531,361 + GFF1276 0.37 -3.1
531,383 + GFF1276 0.38 -2.0
531,384 - GFF1276 0.38 +0.3
531,397 + GFF1276 0.39 +0.6
531,401 - GFF1276 0.39 -0.2
531,414 + GFF1276 0.39 -1.2
531,415 - GFF1276 0.39 -1.0
531,437 + GFF1276 0.40 -0.3
531,437 + GFF1276 0.40 -0.2
531,437 + GFF1276 0.40 +0.0
531,437 + GFF1276 0.40 -1.6
531,438 - GFF1276 0.40 +0.4
531,438 - GFF1276 0.40 -1.3
531,486 + GFF1276 0.42 -1.9
531,486 + GFF1276 0.42 -1.5
531,492 + GFF1276 0.43 +0.6
531,546 - GFF1276 0.45 -1.0
531,567 + GFF1276 0.46 -1.2
531,567 + GFF1276 0.46 +0.2
531,567 + GFF1276 0.46 -0.2
531,618 + GFF1276 0.48 -0.7
531,618 + GFF1276 0.48 +1.6
531,619 - GFF1276 0.48 -1.7
531,646 - GFF1276 0.49 +1.0
531,684 - GFF1276 0.51 -1.0
531,721 - GFF1276 0.52 -0.5
531,787 - GFF1276 0.55 -0.8
531,929 + GFF1276 0.61 +1.0
531,976 + GFF1276 0.63 +0.0
531,976 + GFF1276 0.63 -1.6
531,999 + GFF1276 0.64 +0.6
531,999 + GFF1276 0.64 -1.3
531,999 + GFF1276 0.64 -1.3
532,000 - GFF1276 0.64 -1.0
532,000 - GFF1276 0.64 +0.0
532,041 + GFF1276 0.66 +0.0
532,042 - GFF1276 0.66 -0.8
532,099 + GFF1276 0.68 -1.0
532,100 - GFF1276 0.68 -0.9
532,156 + GFF1276 0.71 -0.6
532,156 + GFF1276 0.71 -1.6
532,161 + GFF1276 0.71 -1.0
532,161 + GFF1276 0.71 -1.3
532,162 - GFF1276 0.71 -0.7
532,162 - GFF1276 0.71 -1.0
532,162 - GFF1276 0.71 -2.0
532,233 + GFF1276 0.74 +0.3
532,233 + GFF1276 0.74 +0.7
532,236 + GFF1276 0.74 -0.3
532,236 + GFF1276 0.74 -1.0
532,236 + GFF1276 0.74 -1.3
532,284 + GFF1276 0.76 +0.3
532,285 - GFF1276 0.76 -1.6
532,314 + GFF1276 0.77 -2.6
532,314 + GFF1276 0.77 +0.3
532,314 + GFF1276 0.77 -0.9
532,315 - GFF1276 0.77 -0.3
532,330 - GFF1276 0.78 -1.3
532,378 - GFF1276 0.80 -0.6
532,378 - GFF1276 0.80 -0.4
532,382 + GFF1276 0.80 +0.0
532,429 + GFF1276 0.82 -1.5
532,429 + GFF1276 0.82 -1.4
532,474 + GFF1276 0.84 +0.4
532,510 - GFF1276 0.86 -0.7
532,510 - GFF1276 0.86 +0.7
532,560 + GFF1276 0.88 +0.0
532,560 + GFF1276 0.88 -1.8
532,590 + GFF1276 0.89 +0.3
532,590 + GFF1276 0.89 -0.2
532,590 + GFF1276 0.89 -1.8
532,591 - GFF1276 0.89 -1.0
532,591 - GFF1276 0.89 +1.0
532,616 - -0.8
532,656 + +0.6
532,656 + +0.3
532,657 - -1.3
532,678 + -1.7
532,678 + +0.3
532,679 - -0.8
532,720 - -0.6
532,731 + +0.7
532,752 + +1.3
532,752 + +2.0
532,846 + +0.0
532,846 + +0.6
532,850 + +0.3
532,895 + +0.6
532,907 - +0.6
533,035 + GFF1277 0.12 -0.3
533,117 + GFF1277 0.18 +0.7
533,130 - GFF1277 0.19 -1.3
533,135 + GFF1277 0.19 +0.0
533,135 + GFF1277 0.19 -1.3
533,135 + GFF1277 0.19 +0.0
533,136 - GFF1277 0.19 -2.5
533,206 - GFF1277 0.24 +0.3
533,236 + GFF1277 0.26 +0.0
533,246 + GFF1277 0.27 -1.6
533,246 + GFF1277 0.27 +0.2
533,348 + GFF1277 0.34 -1.1
533,349 - GFF1277 0.34 +0.0
533,354 + GFF1277 0.34 +0.3
533,385 - GFF1277 0.37 +1.5
533,395 + GFF1277 0.37 +0.3
533,435 + GFF1277 0.40 -0.8
533,589 - GFF1277 0.51 +1.0
533,639 + GFF1277 0.55 +0.3
533,701 + GFF1277 0.59 -0.3
533,702 - GFF1277 0.59 -2.0
533,766 - GFF1277 0.64 +0.4
533,788 + GFF1277 0.65 +0.0
533,789 - GFF1277 0.65 -0.2
533,790 + GFF1277 0.65 +0.7

Or see this region's nucleotide sequence