Strain Fitness in Methylophilus sp. DMC18 around GFF1247

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1246 and GFF1247 are separated by 28 nucleotidesGFF1247 and GFF1248 overlap by 8 nucleotidesGFF1248 and GFF1249 overlap by 9 nucleotides GFF1246 - hypothetical protein, at 496,594 to 498,297 GFF1246 GFF1247 - 4-alpha-glucanotransferase, at 498,326 to 499,783 GFF1247 GFF1248 - N-acetyl-D-glucosamine kinase, at 499,776 to 500,723 GFF1248 GFF1249 - Epoxyqueuosine reductase, at 500,715 to 501,767 GFF1249 Position (kb) 498 499 500Strain fitness (log2 ratio) -2 -1 0 1at 497.341 kb on + strand, within GFF1246at 497.405 kb on + strand, within GFF1246at 497.427 kb on + strand, within GFF1246at 497.427 kb on + strand, within GFF1246at 497.427 kb on + strand, within GFF1246at 497.569 kb on + strand, within GFF1246at 497.569 kb on + strand, within GFF1246at 497.569 kb on + strand, within GFF1246at 497.575 kb on + strand, within GFF1246at 497.575 kb on + strand, within GFF1246at 497.584 kb on + strand, within GFF1246at 497.584 kb on + strand, within GFF1246at 497.586 kb on + strand, within GFF1246at 497.587 kb on - strand, within GFF1246at 497.587 kb on - strand, within GFF1246at 497.610 kb on + strand, within GFF1246at 497.611 kb on - strand, within GFF1246at 497.700 kb on + strand, within GFF1246at 497.718 kb on + strand, within GFF1246at 497.785 kb on + strand, within GFF1246at 497.785 kb on + strand, within GFF1246at 497.787 kb on - strand, within GFF1246at 497.788 kb on + strand, within GFF1246at 497.789 kb on - strand, within GFF1246at 497.794 kb on + strand, within GFF1246at 497.794 kb on + strand, within GFF1246at 497.794 kb on + strand, within GFF1246at 497.795 kb on - strand, within GFF1246at 497.803 kb on + strand, within GFF1246at 497.804 kb on - strand, within GFF1246at 497.806 kb on + strand, within GFF1246at 497.806 kb on + strand, within GFF1246at 497.807 kb on - strand, within GFF1246at 497.824 kb on + strand, within GFF1246at 497.869 kb on - strand, within GFF1246at 497.874 kb on + strand, within GFF1246at 497.928 kb on + strand, within GFF1246at 497.928 kb on + strand, within GFF1246at 497.929 kb on - strand, within GFF1246at 497.929 kb on - strand, within GFF1246at 497.961 kb on + strand, within GFF1246at 497.961 kb on + strand, within GFF1246at 497.961 kb on + strand, within GFF1246at 497.962 kb on - strand, within GFF1246at 498.028 kb on + strand, within GFF1246at 498.029 kb on - strand, within GFF1246at 498.029 kb on - strand, within GFF1246at 498.041 kb on + strand, within GFF1246at 498.041 kb on + strand, within GFF1246at 498.042 kb on - strand, within GFF1246at 498.042 kb on - strand, within GFF1246at 498.149 kb on + strandat 498.230 kb on + strandat 498.401 kb on + strandat 498.412 kb on - strandat 498.517 kb on + strand, within GFF1247at 498.517 kb on + strand, within GFF1247at 498.517 kb on + strand, within GFF1247at 498.704 kb on + strand, within GFF1247at 498.755 kb on - strand, within GFF1247at 498.866 kb on + strand, within GFF1247at 499.046 kb on + strand, within GFF1247at 499.047 kb on - strand, within GFF1247at 499.047 kb on - strand, within GFF1247at 499.085 kb on + strand, within GFF1247at 499.086 kb on - strand, within GFF1247at 499.440 kb on + strand, within GFF1247at 499.441 kb on - strand, within GFF1247at 499.460 kb on + strand, within GFF1247at 499.484 kb on - strand, within GFF1247at 499.533 kb on + strand, within GFF1247at 499.542 kb on - strand, within GFF1247at 499.582 kb on + strand, within GFF1247at 499.680 kb on + strandat 499.680 kb on + strandat 499.680 kb on + strandat 499.680 kb on + strandat 499.680 kb on + strandat 499.687 kb on + strandat 499.688 kb on - strandat 499.890 kb on + strand, within GFF1248at 499.890 kb on + strand, within GFF1248at 499.891 kb on - strand, within GFF1248at 499.891 kb on - strand, within GFF1248at 499.891 kb on - strand, within GFF1248at 499.891 kb on - strand, within GFF1248at 499.941 kb on - strand, within GFF1248at 500.000 kb on + strand, within GFF1248at 500.002 kb on + strand, within GFF1248at 500.002 kb on + strand, within GFF1248at 500.002 kb on + strand, within GFF1248at 500.002 kb on + strand, within GFF1248at 500.002 kb on + strand, within GFF1248at 500.003 kb on - strand, within GFF1248at 500.003 kb on - strand, within GFF1248at 500.003 kb on - strand, within GFF1248at 500.168 kb on + strand, within GFF1248at 500.203 kb on - strand, within GFF1248at 500.203 kb on - strand, within GFF1248at 500.294 kb on + strand, within GFF1248at 500.294 kb on + strand, within GFF1248at 500.297 kb on + strand, within GFF1248at 500.297 kb on + strand, within GFF1248at 500.297 kb on + strand, within GFF1248at 500.297 kb on + strand, within GFF1248at 500.297 kb on + strand, within GFF1248at 500.297 kb on + strand, within GFF1248at 500.298 kb on - strand, within GFF1248at 500.355 kb on + strand, within GFF1248at 500.355 kb on + strand, within GFF1248at 500.355 kb on + strand, within GFF1248at 500.356 kb on - strand, within GFF1248at 500.356 kb on - strand, within GFF1248at 500.385 kb on + strand, within GFF1248at 500.386 kb on - strand, within GFF1248at 500.512 kb on + strand, within GFF1248at 500.513 kb on - strand, within GFF1248at 500.513 kb on - strand, within GFF1248at 500.602 kb on + strand, within GFF1248at 500.603 kb on - strand, within GFF1248at 500.650 kb on + strandat 500.650 kb on + strandat 500.651 kb on - strandat 500.651 kb on - strandat 500.721 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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497,341 + GFF1246 0.44 -0.6
497,405 + GFF1246 0.48 +0.3
497,427 + GFF1246 0.49 +0.0
497,427 + GFF1246 0.49 +0.7
497,427 + GFF1246 0.49 -1.3
497,569 + GFF1246 0.57 +1.0
497,569 + GFF1246 0.57 -1.3
497,569 + GFF1246 0.57 +0.0
497,575 + GFF1246 0.58 -0.5
497,575 + GFF1246 0.58 -2.3
497,584 + GFF1246 0.58 -1.2
497,584 + GFF1246 0.58 +0.0
497,586 + GFF1246 0.58 -0.3
497,587 - GFF1246 0.58 -0.6
497,587 - GFF1246 0.58 +0.6
497,610 + GFF1246 0.60 -0.3
497,611 - GFF1246 0.60 +0.6
497,700 + GFF1246 0.65 -1.6
497,718 + GFF1246 0.66 -0.3
497,785 + GFF1246 0.70 -2.6
497,785 + GFF1246 0.70 -1.0
497,787 - GFF1246 0.70 -1.0
497,788 + GFF1246 0.70 +0.0
497,789 - GFF1246 0.70 +0.4
497,794 + GFF1246 0.70 -0.8
497,794 + GFF1246 0.70 -1.0
497,794 + GFF1246 0.70 -1.0
497,795 - GFF1246 0.70 -0.3
497,803 + GFF1246 0.71 -2.0
497,804 - GFF1246 0.71 -0.4
497,806 + GFF1246 0.71 -2.0
497,806 + GFF1246 0.71 -0.3
497,807 - GFF1246 0.71 +0.0
497,824 + GFF1246 0.72 +0.2
497,869 - GFF1246 0.75 -0.3
497,874 + GFF1246 0.75 -0.4
497,928 + GFF1246 0.78 +0.2
497,928 + GFF1246 0.78 -1.2
497,929 - GFF1246 0.78 -1.8
497,929 - GFF1246 0.78 +0.4
497,961 + GFF1246 0.80 +0.7
497,961 + GFF1246 0.80 -0.6
497,961 + GFF1246 0.80 -0.2
497,962 - GFF1246 0.80 -0.8
498,028 + GFF1246 0.84 +0.5
498,029 - GFF1246 0.84 -2.2
498,029 - GFF1246 0.84 -0.6
498,041 + GFF1246 0.85 -1.0
498,041 + GFF1246 0.85 -0.7
498,042 - GFF1246 0.85 -1.0
498,042 - GFF1246 0.85 -0.3
498,149 + -0.3
498,230 + -1.8
498,401 + -0.2
498,412 - -0.6
498,517 + GFF1247 0.13 -2.0
498,517 + GFF1247 0.13 -1.0
498,517 + GFF1247 0.13 -1.2
498,704 + GFF1247 0.26 -1.0
498,755 - GFF1247 0.29 +0.4
498,866 + GFF1247 0.37 -1.0
499,046 + GFF1247 0.49 +0.6
499,047 - GFF1247 0.49 +0.0
499,047 - GFF1247 0.49 +0.6
499,085 + GFF1247 0.52 -1.6
499,086 - GFF1247 0.52 +0.0
499,440 + GFF1247 0.76 -1.3
499,441 - GFF1247 0.76 +0.0
499,460 + GFF1247 0.78 -1.8
499,484 - GFF1247 0.79 -1.0
499,533 + GFF1247 0.83 -0.8
499,542 - GFF1247 0.83 +1.3
499,582 + GFF1247 0.86 -1.8
499,680 + -1.0
499,680 + +0.3
499,680 + -1.6
499,680 + -0.8
499,680 + +0.0
499,687 + -1.3
499,688 - -2.0
499,890 + GFF1248 0.12 -0.4
499,890 + GFF1248 0.12 -1.2
499,891 - GFF1248 0.12 -2.0
499,891 - GFF1248 0.12 +0.0
499,891 - GFF1248 0.12 -1.3
499,891 - GFF1248 0.12 -0.8
499,941 - GFF1248 0.17 +0.0
500,000 + GFF1248 0.24 +0.6
500,002 + GFF1248 0.24 -0.3
500,002 + GFF1248 0.24 -0.3
500,002 + GFF1248 0.24 +0.0
500,002 + GFF1248 0.24 +1.6
500,002 + GFF1248 0.24 +0.3
500,003 - GFF1248 0.24 +0.2
500,003 - GFF1248 0.24 -0.9
500,003 - GFF1248 0.24 -1.0
500,168 + GFF1248 0.41 -1.5
500,203 - GFF1248 0.45 -0.8
500,203 - GFF1248 0.45 -1.0
500,294 + GFF1248 0.55 +0.6
500,294 + GFF1248 0.55 +0.6
500,297 + GFF1248 0.55 -1.8
500,297 + GFF1248 0.55 -0.6
500,297 + GFF1248 0.55 -1.3
500,297 + GFF1248 0.55 -1.0
500,297 + GFF1248 0.55 -1.4
500,297 + GFF1248 0.55 +0.0
500,298 - GFF1248 0.55 +0.0
500,355 + GFF1248 0.61 -0.1
500,355 + GFF1248 0.61 -1.0
500,355 + GFF1248 0.61 -0.3
500,356 - GFF1248 0.61 -1.6
500,356 - GFF1248 0.61 +0.3
500,385 + GFF1248 0.64 +1.3
500,386 - GFF1248 0.64 -1.0
500,512 + GFF1248 0.78 -1.6
500,513 - GFF1248 0.78 -0.2
500,513 - GFF1248 0.78 +0.3
500,602 + GFF1248 0.87 -1.8
500,603 - GFF1248 0.87 -0.3
500,650 + -0.3
500,650 + -2.0
500,651 - -0.6
500,651 - -1.0
500,721 + -0.5

Or see this region's nucleotide sequence