Strain Fitness in Methylophilus sp. DMC18 around GFF1244

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1243 and GFF1244 are separated by 126 nucleotidesGFF1244 and GFF1245 are separated by 220 nucleotides GFF1243 - Glucose-6-phosphate isomerase, at 491,019 to 492,671 GFF1243 GFF1244 - 1,4-alpha-glucan branching enzyme GlgB, at 492,798 to 495,014 GFF1244 GFF1245 - Glucose-1-phosphate adenylyltransferase, at 495,235 to 496,557 GFF1245 Position (kb) 492 493 494 495 496Strain fitness (log2 ratio) -3 -2 -1 0 1at 492.781 kb on - strandat 492.781 kb on - strandat 492.781 kb on - strandat 492.781 kb on - strandat 492.781 kb on - strandat 492.781 kb on - strandat 492.781 kb on - strandat 492.781 kb on - strandat 492.783 kb on - strandat 492.814 kb on - strandat 492.814 kb on - strandat 492.814 kb on - strandat 493.018 kb on - strandat 493.024 kb on - strand, within GFF1244at 493.035 kb on - strand, within GFF1244at 493.058 kb on - strand, within GFF1244at 493.063 kb on - strand, within GFF1244at 493.150 kb on + strand, within GFF1244at 493.184 kb on + strand, within GFF1244at 493.185 kb on - strand, within GFF1244at 493.225 kb on - strand, within GFF1244at 493.225 kb on - strand, within GFF1244at 493.287 kb on - strand, within GFF1244at 493.450 kb on + strand, within GFF1244at 493.450 kb on + strand, within GFF1244at 493.450 kb on + strand, within GFF1244at 493.451 kb on - strand, within GFF1244at 493.451 kb on - strand, within GFF1244at 493.451 kb on - strand, within GFF1244at 493.451 kb on - strand, within GFF1244at 493.514 kb on - strand, within GFF1244at 493.514 kb on - strand, within GFF1244at 493.577 kb on - strand, within GFF1244at 493.709 kb on - strand, within GFF1244at 493.715 kb on + strand, within GFF1244at 493.716 kb on - strand, within GFF1244at 493.817 kb on - strand, within GFF1244at 493.817 kb on - strand, within GFF1244at 493.817 kb on - strand, within GFF1244at 493.817 kb on - strand, within GFF1244at 493.859 kb on - strand, within GFF1244at 493.859 kb on - strand, within GFF1244at 493.868 kb on + strand, within GFF1244at 493.870 kb on + strand, within GFF1244at 493.870 kb on + strand, within GFF1244at 494.033 kb on + strand, within GFF1244at 494.033 kb on + strand, within GFF1244at 494.074 kb on + strand, within GFF1244at 494.145 kb on - strand, within GFF1244at 494.145 kb on - strand, within GFF1244at 494.236 kb on - strand, within GFF1244at 494.248 kb on + strand, within GFF1244at 494.256 kb on - strand, within GFF1244at 494.256 kb on - strand, within GFF1244at 494.318 kb on + strand, within GFF1244at 494.318 kb on + strand, within GFF1244at 494.321 kb on - strand, within GFF1244at 494.337 kb on - strand, within GFF1244at 494.401 kb on + strand, within GFF1244at 494.434 kb on + strand, within GFF1244at 494.437 kb on - strand, within GFF1244at 494.541 kb on + strand, within GFF1244at 494.541 kb on + strand, within GFF1244at 494.542 kb on - strand, within GFF1244at 494.542 kb on - strand, within GFF1244at 494.542 kb on - strand, within GFF1244at 494.632 kb on + strand, within GFF1244at 494.633 kb on - strand, within GFF1244at 494.642 kb on - strand, within GFF1244at 494.666 kb on - strand, within GFF1244at 494.666 kb on - strand, within GFF1244at 494.666 kb on - strand, within GFF1244at 494.666 kb on - strand, within GFF1244at 494.666 kb on - strand, within GFF1244at 494.701 kb on + strand, within GFF1244at 494.702 kb on - strand, within GFF1244at 494.702 kb on - strand, within GFF1244at 494.726 kb on + strand, within GFF1244at 494.926 kb on + strandat 494.940 kb on - strandat 495.108 kb on + strandat 495.108 kb on + strandat 495.108 kb on + strandat 495.108 kb on + strandat 495.108 kb on + strandat 495.109 kb on - strandat 495.109 kb on - strandat 495.186 kb on + strandat 495.186 kb on + strandat 495.186 kb on + strandat 495.187 kb on - strandat 495.187 kb on - strandat 495.195 kb on + strandat 495.196 kb on - strandat 495.196 kb on - strandat 495.228 kb on + strandat 495.228 kb on + strandat 495.228 kb on + strandat 495.228 kb on + strandat 495.228 kb on + strandat 495.228 kb on + strandat 495.229 kb on - strandat 495.245 kb on + strandat 495.306 kb on + strandat 495.327 kb on + strandat 495.328 kb on - strandat 495.429 kb on + strand, within GFF1245at 495.447 kb on + strand, within GFF1245at 495.448 kb on - strand, within GFF1245at 495.456 kb on + strand, within GFF1245at 495.456 kb on + strand, within GFF1245at 495.456 kb on + strand, within GFF1245at 495.478 kb on - strand, within GFF1245at 495.494 kb on - strand, within GFF1245at 495.563 kb on - strand, within GFF1245at 495.573 kb on + strand, within GFF1245at 495.573 kb on + strand, within GFF1245at 495.573 kb on + strand, within GFF1245at 495.574 kb on - strand, within GFF1245at 495.607 kb on + strand, within GFF1245at 495.607 kb on + strand, within GFF1245at 495.607 kb on + strand, within GFF1245at 495.632 kb on - strand, within GFF1245at 495.670 kb on + strand, within GFF1245at 495.672 kb on + strand, within GFF1245at 495.672 kb on + strand, within GFF1245at 495.672 kb on + strand, within GFF1245at 495.672 kb on + strand, within GFF1245at 495.673 kb on - strand, within GFF1245at 495.696 kb on + strand, within GFF1245at 495.696 kb on + strand, within GFF1245at 495.696 kb on + strand, within GFF1245at 495.700 kb on + strand, within GFF1245at 495.702 kb on + strand, within GFF1245at 495.703 kb on - strand, within GFF1245at 495.870 kb on + strand, within GFF1245at 495.871 kb on - strand, within GFF1245at 495.909 kb on + strand, within GFF1245at 495.909 kb on + strand, within GFF1245at 495.909 kb on + strand, within GFF1245at 495.909 kb on + strand, within GFF1245at 495.910 kb on - strand, within GFF1245at 495.913 kb on + strand, within GFF1245at 495.913 kb on + strand, within GFF1245at 495.913 kb on + strand, within GFF1245at 495.914 kb on - strand, within GFF1245at 495.914 kb on - strand, within GFF1245at 495.915 kb on + strand, within GFF1245at 495.961 kb on + strand, within GFF1245at 495.962 kb on - strand, within GFF1245at 496.006 kb on + strand, within GFF1245at 496.006 kb on + strand, within GFF1245at 496.006 kb on + strand, within GFF1245at 496.007 kb on - strand, within GFF1245at 496.007 kb on - strand, within GFF1245at 496.007 kb on - strand, within GFF1245at 496.007 kb on - strand, within GFF1245

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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492,781 - -1.8
492,781 - -0.3
492,781 - +0.0
492,781 - -1.6
492,781 - -0.2
492,781 - +0.3
492,781 - -0.8
492,781 - -1.0
492,783 - +1.3
492,814 - -1.0
492,814 - -2.0
492,814 - -1.3
493,018 - -1.0
493,024 - GFF1244 0.10 -1.0
493,035 - GFF1244 0.11 -1.0
493,058 - GFF1244 0.12 -1.0
493,063 - GFF1244 0.12 -1.6
493,150 + GFF1244 0.16 -1.5
493,184 + GFF1244 0.17 -0.3
493,185 - GFF1244 0.17 -2.7
493,225 - GFF1244 0.19 +0.2
493,225 - GFF1244 0.19 -0.3
493,287 - GFF1244 0.22 +0.0
493,450 + GFF1244 0.29 -1.0
493,450 + GFF1244 0.29 -0.8
493,450 + GFF1244 0.29 -1.0
493,451 - GFF1244 0.29 -1.8
493,451 - GFF1244 0.29 +0.4
493,451 - GFF1244 0.29 -0.3
493,451 - GFF1244 0.29 -2.3
493,514 - GFF1244 0.32 -0.7
493,514 - GFF1244 0.32 -0.6
493,577 - GFF1244 0.35 -0.3
493,709 - GFF1244 0.41 +0.0
493,715 + GFF1244 0.41 -1.6
493,716 - GFF1244 0.41 +0.3
493,817 - GFF1244 0.46 -1.3
493,817 - GFF1244 0.46 -2.2
493,817 - GFF1244 0.46 -1.0
493,817 - GFF1244 0.46 +0.3
493,859 - GFF1244 0.48 +0.0
493,859 - GFF1244 0.48 -1.0
493,868 + GFF1244 0.48 +0.0
493,870 + GFF1244 0.48 -0.8
493,870 + GFF1244 0.48 -1.0
494,033 + GFF1244 0.56 -1.0
494,033 + GFF1244 0.56 -1.0
494,074 + GFF1244 0.58 -0.3
494,145 - GFF1244 0.61 -0.6
494,145 - GFF1244 0.61 +0.0
494,236 - GFF1244 0.65 +1.0
494,248 + GFF1244 0.65 -1.0
494,256 - GFF1244 0.66 -1.3
494,256 - GFF1244 0.66 -0.6
494,318 + GFF1244 0.69 -1.6
494,318 + GFF1244 0.69 -0.3
494,321 - GFF1244 0.69 -1.0
494,337 - GFF1244 0.69 -1.2
494,401 + GFF1244 0.72 -0.9
494,434 + GFF1244 0.74 -1.3
494,437 - GFF1244 0.74 -2.6
494,541 + GFF1244 0.79 -1.6
494,541 + GFF1244 0.79 +0.0
494,542 - GFF1244 0.79 -1.0
494,542 - GFF1244 0.79 +0.6
494,542 - GFF1244 0.79 +0.0
494,632 + GFF1244 0.83 -1.8
494,633 - GFF1244 0.83 -0.2
494,642 - GFF1244 0.83 -1.4
494,666 - GFF1244 0.84 -3.0
494,666 - GFF1244 0.84 +0.0
494,666 - GFF1244 0.84 -2.0
494,666 - GFF1244 0.84 -0.2
494,666 - GFF1244 0.84 -1.0
494,701 + GFF1244 0.86 -0.3
494,702 - GFF1244 0.86 +0.0
494,702 - GFF1244 0.86 -1.3
494,726 + GFF1244 0.87 -1.3
494,926 + +0.0
494,940 - -1.3
495,108 + -1.1
495,108 + -0.2
495,108 + -0.6
495,108 + +0.0
495,108 + -1.0
495,109 - -0.1
495,109 - -0.8
495,186 + +0.3
495,186 + -0.6
495,186 + -0.6
495,187 - -1.0
495,187 - +0.4
495,195 + -0.3
495,196 - -2.6
495,196 - -1.6
495,228 + +0.6
495,228 + -1.0
495,228 + +0.2
495,228 + +1.0
495,228 + -1.0
495,228 + -0.2
495,229 - +0.0
495,245 + -0.4
495,306 + -1.0
495,327 + +1.2
495,328 - -0.7
495,429 + GFF1245 0.15 +0.3
495,447 + GFF1245 0.16 -0.1
495,448 - GFF1245 0.16 -0.2
495,456 + GFF1245 0.17 -1.0
495,456 + GFF1245 0.17 -0.6
495,456 + GFF1245 0.17 +0.5
495,478 - GFF1245 0.18 -0.2
495,494 - GFF1245 0.20 -1.0
495,563 - GFF1245 0.25 +0.6
495,573 + GFF1245 0.26 -0.3
495,573 + GFF1245 0.26 -0.8
495,573 + GFF1245 0.26 +1.0
495,574 - GFF1245 0.26 -0.3
495,607 + GFF1245 0.28 -0.6
495,607 + GFF1245 0.28 -0.2
495,607 + GFF1245 0.28 -1.6
495,632 - GFF1245 0.30 -1.6
495,670 + GFF1245 0.33 -0.3
495,672 + GFF1245 0.33 -0.3
495,672 + GFF1245 0.33 +0.9
495,672 + GFF1245 0.33 -1.0
495,672 + GFF1245 0.33 -2.0
495,673 - GFF1245 0.33 -2.3
495,696 + GFF1245 0.35 -1.6
495,696 + GFF1245 0.35 +0.5
495,696 + GFF1245 0.35 -0.7
495,700 + GFF1245 0.35 +1.3
495,702 + GFF1245 0.35 +0.2
495,703 - GFF1245 0.35 -0.3
495,870 + GFF1245 0.48 -1.0
495,871 - GFF1245 0.48 -1.6
495,909 + GFF1245 0.51 -0.3
495,909 + GFF1245 0.51 +0.4
495,909 + GFF1245 0.51 -1.0
495,909 + GFF1245 0.51 +0.0
495,910 - GFF1245 0.51 -1.0
495,913 + GFF1245 0.51 -0.8
495,913 + GFF1245 0.51 -1.0
495,913 + GFF1245 0.51 +0.4
495,914 - GFF1245 0.51 +0.0
495,914 - GFF1245 0.51 +0.4
495,915 + GFF1245 0.51 +0.7
495,961 + GFF1245 0.55 -1.1
495,962 - GFF1245 0.55 -1.3
496,006 + GFF1245 0.58 +0.3
496,006 + GFF1245 0.58 -0.2
496,006 + GFF1245 0.58 -0.7
496,007 - GFF1245 0.58 -1.4
496,007 - GFF1245 0.58 -0.2
496,007 - GFF1245 0.58 -1.2
496,007 - GFF1245 0.58 -0.4

Or see this region's nucleotide sequence