Strain Fitness in Methylophilus sp. DMC18 around GFF1242

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1241 and GFF1242 are separated by 81 nucleotidesGFF1242 and GFF1243 are separated by 71 nucleotides GFF1241 - hypothetical protein, at 489,106 to 490,224 GFF1241 GFF1242 - Response regulator UvrY, at 490,306 to 490,947 GFF1242 GFF1243 - Glucose-6-phosphate isomerase, at 491,019 to 492,671 GFF1243 Position (kb) 490 491Strain fitness (log2 ratio) -3 -2 -1 0 1at 489.510 kb on + strand, within GFF1241at 489.510 kb on + strand, within GFF1241at 489.510 kb on + strand, within GFF1241at 489.510 kb on + strand, within GFF1241at 489.519 kb on + strand, within GFF1241at 489.519 kb on + strand, within GFF1241at 489.519 kb on + strand, within GFF1241at 489.519 kb on + strand, within GFF1241at 489.520 kb on - strand, within GFF1241at 489.520 kb on - strand, within GFF1241at 489.780 kb on - strand, within GFF1241at 489.780 kb on - strand, within GFF1241at 489.780 kb on - strand, within GFF1241at 489.780 kb on - strand, within GFF1241at 489.780 kb on - strand, within GFF1241at 489.786 kb on + strand, within GFF1241at 489.786 kb on + strand, within GFF1241at 489.787 kb on - strand, within GFF1241at 489.787 kb on - strand, within GFF1241at 489.872 kb on + strand, within GFF1241at 489.872 kb on + strand, within GFF1241at 489.873 kb on - strand, within GFF1241at 489.873 kb on - strand, within GFF1241at 489.873 kb on - strand, within GFF1241at 489.982 kb on + strand, within GFF1241at 489.982 kb on + strand, within GFF1241at 489.983 kb on - strand, within GFF1241at 490.034 kb on + strand, within GFF1241at 490.113 kb on + strandat 490.113 kb on + strandat 490.114 kb on - strandat 490.114 kb on - strandat 490.185 kb on + strandat 490.271 kb on - strandat 490.312 kb on - strandat 490.314 kb on - strandat 490.314 kb on - strandat 490.314 kb on - strandat 490.314 kb on - strandat 490.337 kb on + strandat 490.337 kb on + strandat 490.338 kb on - strandat 490.355 kb on + strandat 490.355 kb on + strandat 490.355 kb on + strandat 490.355 kb on + strandat 490.355 kb on + strandat 490.356 kb on - strandat 490.356 kb on - strandat 490.356 kb on - strandat 490.356 kb on - strandat 490.356 kb on - strandat 490.376 kb on + strand, within GFF1242at 490.376 kb on + strand, within GFF1242at 490.395 kb on + strand, within GFF1242at 490.396 kb on - strand, within GFF1242at 490.396 kb on - strand, within GFF1242at 490.437 kb on + strand, within GFF1242at 490.437 kb on + strand, within GFF1242at 490.437 kb on + strand, within GFF1242at 490.438 kb on - strand, within GFF1242at 490.438 kb on - strand, within GFF1242at 490.445 kb on + strand, within GFF1242at 490.445 kb on + strand, within GFF1242at 490.445 kb on + strand, within GFF1242at 490.446 kb on - strand, within GFF1242at 490.472 kb on + strand, within GFF1242at 490.472 kb on + strand, within GFF1242at 490.472 kb on + strand, within GFF1242at 490.473 kb on - strand, within GFF1242at 490.473 kb on - strand, within GFF1242at 490.473 kb on - strand, within GFF1242at 490.505 kb on + strand, within GFF1242at 490.505 kb on + strand, within GFF1242at 490.505 kb on + strand, within GFF1242at 490.505 kb on + strand, within GFF1242at 490.505 kb on + strand, within GFF1242at 490.505 kb on + strand, within GFF1242at 490.505 kb on + strand, within GFF1242at 490.505 kb on + strand, within GFF1242at 490.506 kb on - strand, within GFF1242at 490.506 kb on - strand, within GFF1242at 490.514 kb on + strand, within GFF1242at 490.514 kb on + strand, within GFF1242at 490.515 kb on - strand, within GFF1242at 490.567 kb on + strand, within GFF1242at 490.567 kb on + strand, within GFF1242at 490.567 kb on + strand, within GFF1242at 490.567 kb on + strand, within GFF1242at 490.567 kb on + strand, within GFF1242at 490.567 kb on + strand, within GFF1242at 490.567 kb on + strand, within GFF1242at 490.567 kb on + strand, within GFF1242at 490.568 kb on - strand, within GFF1242at 490.568 kb on - strand, within GFF1242at 490.568 kb on - strand, within GFF1242at 490.568 kb on - strand, within GFF1242at 490.568 kb on - strand, within GFF1242at 490.582 kb on + strand, within GFF1242at 490.582 kb on + strand, within GFF1242at 490.582 kb on + strand, within GFF1242at 490.582 kb on + strand, within GFF1242at 490.582 kb on + strand, within GFF1242at 490.582 kb on + strand, within GFF1242at 490.582 kb on + strand, within GFF1242at 490.583 kb on - strand, within GFF1242at 490.583 kb on - strand, within GFF1242at 490.583 kb on - strand, within GFF1242at 490.583 kb on - strand, within GFF1242at 490.619 kb on - strand, within GFF1242at 490.632 kb on + strand, within GFF1242at 490.632 kb on + strand, within GFF1242at 490.632 kb on + strand, within GFF1242at 490.632 kb on + strand, within GFF1242at 490.632 kb on + strand, within GFF1242at 490.661 kb on + strand, within GFF1242at 490.687 kb on + strand, within GFF1242at 490.692 kb on + strand, within GFF1242at 490.692 kb on + strand, within GFF1242at 490.738 kb on + strand, within GFF1242at 490.830 kb on + strand, within GFF1242at 490.830 kb on + strand, within GFF1242at 490.831 kb on - strand, within GFF1242at 490.864 kb on + strand, within GFF1242at 490.864 kb on + strand, within GFF1242at 490.864 kb on + strand, within GFF1242at 490.865 kb on - strand, within GFF1242at 490.896 kb on + strandat 490.896 kb on + strandat 490.896 kb on + strandat 490.897 kb on - strandat 490.897 kb on - strandat 490.902 kb on + strandat 490.902 kb on + strandat 490.903 kb on - strandat 490.921 kb on + strandat 490.960 kb on + strandat 490.960 kb on + strandat 491.005 kb on + strandat 491.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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489,510 + GFF1241 0.36 -1.4
489,510 + GFF1241 0.36 -1.0
489,510 + GFF1241 0.36 +0.1
489,510 + GFF1241 0.36 -0.8
489,519 + GFF1241 0.37 -1.0
489,519 + GFF1241 0.37 +0.3
489,519 + GFF1241 0.37 -0.4
489,519 + GFF1241 0.37 -0.5
489,520 - GFF1241 0.37 -0.1
489,520 - GFF1241 0.37 +1.0
489,780 - GFF1241 0.60 -1.6
489,780 - GFF1241 0.60 +0.5
489,780 - GFF1241 0.60 +0.0
489,780 - GFF1241 0.60 -0.2
489,780 - GFF1241 0.60 -0.3
489,786 + GFF1241 0.61 -0.6
489,786 + GFF1241 0.61 -1.0
489,787 - GFF1241 0.61 -0.7
489,787 - GFF1241 0.61 -2.2
489,872 + GFF1241 0.68 +0.0
489,872 + GFF1241 0.68 +0.3
489,873 - GFF1241 0.69 +0.4
489,873 - GFF1241 0.69 -1.1
489,873 - GFF1241 0.69 +1.0
489,982 + GFF1241 0.78 +0.8
489,982 + GFF1241 0.78 -1.3
489,983 - GFF1241 0.78 -1.6
490,034 + GFF1241 0.83 -0.8
490,113 + -1.1
490,113 + -1.0
490,114 - +0.8
490,114 - +0.4
490,185 + -1.4
490,271 - -1.3
490,312 - -1.9
490,314 - -0.6
490,314 - -1.5
490,314 - -1.3
490,314 - -0.3
490,337 + +0.4
490,337 + -0.2
490,338 - -0.6
490,355 + -0.2
490,355 + -0.7
490,355 + -0.4
490,355 + +0.0
490,355 + +0.4
490,356 - -1.4
490,356 - -0.7
490,356 - -1.3
490,356 - -0.2
490,356 - +0.6
490,376 + GFF1242 0.11 -0.7
490,376 + GFF1242 0.11 -1.8
490,395 + GFF1242 0.14 -0.4
490,396 - GFF1242 0.14 -1.8
490,396 - GFF1242 0.14 +0.1
490,437 + GFF1242 0.20 -0.5
490,437 + GFF1242 0.20 -0.5
490,437 + GFF1242 0.20 -0.8
490,438 - GFF1242 0.21 +0.2
490,438 - GFF1242 0.21 -1.7
490,445 + GFF1242 0.22 -0.8
490,445 + GFF1242 0.22 -0.3
490,445 + GFF1242 0.22 +0.4
490,446 - GFF1242 0.22 -0.4
490,472 + GFF1242 0.26 -1.6
490,472 + GFF1242 0.26 -0.3
490,472 + GFF1242 0.26 -2.0
490,473 - GFF1242 0.26 -1.3
490,473 - GFF1242 0.26 +0.0
490,473 - GFF1242 0.26 -1.0
490,505 + GFF1242 0.31 -0.8
490,505 + GFF1242 0.31 +0.0
490,505 + GFF1242 0.31 -1.3
490,505 + GFF1242 0.31 +0.4
490,505 + GFF1242 0.31 -0.5
490,505 + GFF1242 0.31 -1.3
490,505 + GFF1242 0.31 -3.0
490,505 + GFF1242 0.31 -1.0
490,506 - GFF1242 0.31 -0.1
490,506 - GFF1242 0.31 -0.5
490,514 + GFF1242 0.32 -0.7
490,514 + GFF1242 0.32 +1.4
490,515 - GFF1242 0.33 -0.8
490,567 + GFF1242 0.41 -1.3
490,567 + GFF1242 0.41 -0.2
490,567 + GFF1242 0.41 -0.2
490,567 + GFF1242 0.41 -1.6
490,567 + GFF1242 0.41 -1.0
490,567 + GFF1242 0.41 -0.4
490,567 + GFF1242 0.41 +0.6
490,567 + GFF1242 0.41 +0.3
490,568 - GFF1242 0.41 +0.6
490,568 - GFF1242 0.41 +0.0
490,568 - GFF1242 0.41 -0.5
490,568 - GFF1242 0.41 -0.7
490,568 - GFF1242 0.41 -1.0
490,582 + GFF1242 0.43 -0.4
490,582 + GFF1242 0.43 -0.2
490,582 + GFF1242 0.43 -0.6
490,582 + GFF1242 0.43 +1.3
490,582 + GFF1242 0.43 -0.6
490,582 + GFF1242 0.43 -1.2
490,582 + GFF1242 0.43 +0.8
490,583 - GFF1242 0.43 -0.3
490,583 - GFF1242 0.43 -1.3
490,583 - GFF1242 0.43 -1.8
490,583 - GFF1242 0.43 -0.3
490,619 - GFF1242 0.49 -1.4
490,632 + GFF1242 0.51 +0.0
490,632 + GFF1242 0.51 +0.1
490,632 + GFF1242 0.51 -1.3
490,632 + GFF1242 0.51 -2.2
490,632 + GFF1242 0.51 -0.9
490,661 + GFF1242 0.55 -0.6
490,687 + GFF1242 0.59 -0.3
490,692 + GFF1242 0.60 -1.0
490,692 + GFF1242 0.60 -0.4
490,738 + GFF1242 0.67 +0.0
490,830 + GFF1242 0.82 -1.7
490,830 + GFF1242 0.82 -2.0
490,831 - GFF1242 0.82 -1.3
490,864 + GFF1242 0.87 -0.3
490,864 + GFF1242 0.87 +0.4
490,864 + GFF1242 0.87 -1.0
490,865 - GFF1242 0.87 +0.1
490,896 + -1.6
490,896 + -2.2
490,896 + +0.0
490,897 - -0.7
490,897 - +0.4
490,902 + +0.0
490,902 + -1.0
490,903 - -0.1
490,921 + -0.4
490,960 + +0.6
490,960 + -0.2
491,005 + +0.2
491,009 - -0.7

Or see this region's nucleotide sequence