Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1236 and GFF1237 are separated by 216 nucleotides GFF1237 and GFF1238 are separated by 43 nucleotides GFF1238 and GFF1239 are separated by 25 nucleotides
GFF1236 - hypothetical protein, at 481,393 to 483,774
GFF1236
GFF1237 - Recombination protein RecR, at 483,991 to 484,590
GFF1237
GFF1238 - Nucleoid-associated protein YbaB, at 484,634 to 484,942
GFF1238
GFF1239 - Holliday junction ATP-dependent DNA helicase RuvB, at 484,968 to 486,758
GFF1239
Position (kb) 484
485 Strain fitness (log2 ratio) -2
-1
0
1 at 483.645 kb on + strand at 483.646 kb on - strand at 483.735 kb on + strand at 483.736 kb on - strand at 483.736 kb on - strand at 483.736 kb on - strand at 483.742 kb on - strand at 483.756 kb on + strand at 483.756 kb on + strand at 483.757 kb on - strand at 483.757 kb on - strand at 483.757 kb on - strand at 483.766 kb on + strand at 483.767 kb on - strand at 483.780 kb on - strand at 483.780 kb on - strand at 483.800 kb on - strand at 483.832 kb on - strand at 483.832 kb on - strand at 483.855 kb on + strand at 483.855 kb on + strand at 483.855 kb on + strand at 483.856 kb on - strand at 483.856 kb on - strand at 483.856 kb on - strand at 483.856 kb on - strand at 483.856 kb on - strand at 483.858 kb on - strand at 483.878 kb on - strand at 483.878 kb on - strand at 483.899 kb on - strand at 483.993 kb on - strand at 484.046 kb on + strand at 484.047 kb on - strand at 484.047 kb on - strand at 484.126 kb on - strand, within GFF1237 at 484.126 kb on - strand, within GFF1237 at 484.127 kb on + strand, within GFF1237 at 484.127 kb on + strand, within GFF1237 at 484.127 kb on + strand, within GFF1237 at 484.127 kb on + strand, within GFF1237 at 484.127 kb on + strand, within GFF1237 at 484.127 kb on + strand, within GFF1237 at 484.127 kb on + strand, within GFF1237 at 484.127 kb on + strand, within GFF1237 at 484.127 kb on + strand, within GFF1237 at 484.128 kb on - strand, within GFF1237 at 484.128 kb on - strand, within GFF1237 at 484.128 kb on - strand, within GFF1237 at 484.128 kb on - strand, within GFF1237 at 484.128 kb on - strand, within GFF1237 at 484.128 kb on - strand, within GFF1237 at 484.128 kb on - strand, within GFF1237 at 484.128 kb on - strand, within GFF1237 at 484.128 kb on - strand, within GFF1237 at 484.128 kb on - strand, within GFF1237 at 484.170 kb on + strand, within GFF1237 at 484.171 kb on - strand, within GFF1237 at 484.171 kb on - strand, within GFF1237 at 484.216 kb on - strand, within GFF1237 at 484.273 kb on + strand, within GFF1237 at 484.274 kb on - strand, within GFF1237 at 484.274 kb on - strand, within GFF1237 at 484.274 kb on - strand, within GFF1237 at 484.281 kb on - strand, within GFF1237 at 484.292 kb on + strand, within GFF1237 at 484.293 kb on - strand, within GFF1237 at 484.293 kb on - strand, within GFF1237 at 484.293 kb on - strand, within GFF1237 at 484.296 kb on + strand, within GFF1237 at 484.297 kb on - strand, within GFF1237 at 484.297 kb on - strand, within GFF1237 at 484.297 kb on - strand, within GFF1237 at 484.346 kb on - strand, within GFF1237 at 484.346 kb on - strand, within GFF1237 at 484.346 kb on - strand, within GFF1237 at 484.346 kb on - strand, within GFF1237 at 484.346 kb on - strand, within GFF1237 at 484.346 kb on - strand, within GFF1237 at 484.346 kb on - strand, within GFF1237 at 484.388 kb on - strand, within GFF1237 at 484.451 kb on - strand, within GFF1237 at 484.503 kb on - strand, within GFF1237 at 484.503 kb on - strand, within GFF1237 at 484.503 kb on - strand, within GFF1237 at 484.503 kb on - strand, within GFF1237 at 484.503 kb on - strand, within GFF1237 at 484.524 kb on + strand, within GFF1237 at 484.613 kb on - strand at 484.615 kb on + strand at 484.616 kb on - strand at 484.616 kb on - strand at 484.616 kb on - strand at 484.616 kb on - strand at 484.616 kb on - strand at 484.635 kb on + strand at 484.636 kb on - strand at 484.636 kb on - strand at 484.729 kb on + strand, within GFF1238 at 484.730 kb on - strand, within GFF1238 at 484.730 kb on - strand, within GFF1238 at 484.802 kb on - strand, within GFF1238 at 484.841 kb on - strand, within GFF1238 at 484.841 kb on - strand, within GFF1238 at 484.885 kb on + strand, within GFF1238 at 484.919 kb on - strand at 484.919 kb on - strand at 484.919 kb on - strand at 484.919 kb on - strand at 484.919 kb on - strand at 484.960 kb on - strand at 484.969 kb on + strand at 484.975 kb on - strand at 484.975 kb on - strand at 484.975 kb on - strand at 484.975 kb on - strand at 484.982 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 483,645 + -1.2 483,646 - -1.3 483,735 + -1.3 483,736 - -1.1 483,736 - -0.4 483,736 - -0.9 483,742 - -0.3 483,756 + -0.1 483,756 + +0.6 483,757 - -1.5 483,757 - +0.5 483,757 - +0.0 483,766 + -1.3 483,767 - -0.4 483,780 - +0.2 483,780 - -0.1 483,800 - +0.1 483,832 - -1.8 483,832 - +0.0 483,855 + +0.0 483,855 + -0.3 483,855 + +1.1 483,856 - +0.5 483,856 - -0.8 483,856 - -0.1 483,856 - -0.6 483,856 - -0.9 483,858 - -0.8 483,878 - +0.7 483,878 - -0.8 483,899 - +0.9 483,993 - -1.0 484,046 + -0.4 484,047 - -1.0 484,047 - -0.4 484,126 - GFF1237 0.23 -1.6 484,126 - GFF1237 0.23 +0.1 484,127 + GFF1237 0.23 +0.7 484,127 + GFF1237 0.23 -1.6 484,127 + GFF1237 0.23 +1.0 484,127 + GFF1237 0.23 -1.0 484,127 + GFF1237 0.23 -0.3 484,127 + GFF1237 0.23 -1.8 484,127 + GFF1237 0.23 -0.4 484,127 + GFF1237 0.23 +1.5 484,127 + GFF1237 0.23 -0.6 484,128 - GFF1237 0.23 -0.2 484,128 - GFF1237 0.23 -0.7 484,128 - GFF1237 0.23 -2.0 484,128 - GFF1237 0.23 +0.0 484,128 - GFF1237 0.23 -0.7 484,128 - GFF1237 0.23 -0.5 484,128 - GFF1237 0.23 -0.2 484,128 - GFF1237 0.23 +0.1 484,128 - GFF1237 0.23 +0.6 484,128 - GFF1237 0.23 +0.3 484,170 + GFF1237 0.30 -0.8 484,171 - GFF1237 0.30 +0.7 484,171 - GFF1237 0.30 -0.3 484,216 - GFF1237 0.38 -0.3 484,273 + GFF1237 0.47 -1.6 484,274 - GFF1237 0.47 +1.0 484,274 - GFF1237 0.47 -0.5 484,274 - GFF1237 0.47 +0.0 484,281 - GFF1237 0.48 +0.2 484,292 + GFF1237 0.50 -2.2 484,293 - GFF1237 0.50 -0.5 484,293 - GFF1237 0.50 -0.3 484,293 - GFF1237 0.50 +0.0 484,296 + GFF1237 0.51 +1.0 484,297 - GFF1237 0.51 -1.0 484,297 - GFF1237 0.51 -0.7 484,297 - GFF1237 0.51 -0.3 484,346 - GFF1237 0.59 +0.0 484,346 - GFF1237 0.59 -0.6 484,346 - GFF1237 0.59 +0.7 484,346 - GFF1237 0.59 +0.3 484,346 - GFF1237 0.59 -1.2 484,346 - GFF1237 0.59 +1.0 484,346 - GFF1237 0.59 -1.6 484,388 - GFF1237 0.66 -2.2 484,451 - GFF1237 0.77 -0.6 484,503 - GFF1237 0.85 -0.2 484,503 - GFF1237 0.85 +1.0 484,503 - GFF1237 0.85 -0.8 484,503 - GFF1237 0.85 +0.2 484,503 - GFF1237 0.85 +0.3 484,524 + GFF1237 0.89 -0.6 484,613 - -1.8 484,615 + -1.0 484,616 - -0.4 484,616 - -1.0 484,616 - -0.3 484,616 - -1.8 484,616 - +0.6 484,635 + +0.0 484,636 - +0.3 484,636 - +0.5 484,729 + GFF1238 0.31 +0.0 484,730 - GFF1238 0.31 -0.9 484,730 - GFF1238 0.31 -1.0 484,802 - GFF1238 0.54 -1.3 484,841 - GFF1238 0.67 +0.3 484,841 - GFF1238 0.67 +0.7 484,885 + GFF1238 0.81 -1.0 484,919 - -1.0 484,919 - +0.3 484,919 - -0.2 484,919 - -0.2 484,919 - +0.5 484,960 - -2.0 484,969 + -0.3 484,975 - +0.7 484,975 - -1.3 484,975 - -1.2 484,975 - +0.1 484,982 + -1.6
Or see this region's nucleotide sequence