Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1191 and GFF1192 are separated by 54 nucleotides GFF1192 and GFF1193 are separated by 236 nucleotides GFF1193 and GFF1194 overlap by 4 nucleotides
GFF1191 - Dual-specificity RNA methyltransferase RlmN, at 442,815 to 443,933
GFF1191
GFF1192 - Nucleoside diphosphate kinase, at 443,988 to 444,392
GFF1192
GFF1193 - hypothetical protein, at 444,629 to 445,837
GFF1193
GFF1194 - Formyltransferase/hydrolase complex Fhc subunit A, at 445,834 to 447,498
GFF1194
Position (kb) 444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 443.661 kb on - strand, within GFF1191 at 443.661 kb on - strand, within GFF1191 at 443.796 kb on - strand, within GFF1191 at 443.937 kb on + strand at 443.938 kb on - strand at 443.938 kb on - strand at 443.944 kb on - strand at 444.435 kb on - strand at 444.435 kb on - strand at 444.448 kb on + strand at 444.467 kb on + strand at 444.467 kb on + strand at 444.467 kb on + strand at 444.467 kb on + strand at 444.467 kb on + strand at 444.467 kb on + strand at 444.468 kb on - strand at 444.468 kb on - strand at 444.468 kb on - strand at 444.468 kb on - strand at 444.488 kb on + strand at 444.489 kb on - strand at 444.496 kb on + strand at 444.500 kb on + strand at 444.501 kb on - strand at 444.528 kb on + strand at 444.533 kb on - strand at 444.550 kb on + strand at 444.596 kb on + strand at 444.597 kb on - strand at 444.597 kb on - strand at 444.597 kb on - strand at 444.600 kb on + strand at 444.601 kb on - strand at 444.601 kb on - strand at 444.601 kb on - strand at 444.601 kb on - strand at 444.601 kb on - strand at 444.601 kb on - strand at 444.620 kb on + strand at 444.620 kb on + strand at 444.620 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.622 kb on + strand at 444.623 kb on - strand at 444.623 kb on - strand at 444.649 kb on + strand at 444.649 kb on + strand at 444.678 kb on + strand at 444.678 kb on + strand at 444.678 kb on + strand at 444.679 kb on - strand at 444.679 kb on - strand at 444.679 kb on - strand at 444.746 kb on + strand at 444.813 kb on + strand, within GFF1193 at 444.813 kb on + strand, within GFF1193 at 444.813 kb on + strand, within GFF1193 at 444.817 kb on + strand, within GFF1193 at 444.817 kb on + strand, within GFF1193 at 444.817 kb on + strand, within GFF1193 at 444.871 kb on + strand, within GFF1193 at 444.916 kb on + strand, within GFF1193 at 444.916 kb on + strand, within GFF1193 at 444.916 kb on + strand, within GFF1193 at 444.917 kb on - strand, within GFF1193 at 444.972 kb on + strand, within GFF1193 at 444.975 kb on + strand, within GFF1193 at 444.975 kb on + strand, within GFF1193 at 445.014 kb on + strand, within GFF1193 at 445.014 kb on + strand, within GFF1193 at 445.015 kb on - strand, within GFF1193 at 445.044 kb on + strand, within GFF1193 at 445.114 kb on + strand, within GFF1193 at 445.142 kb on + strand, within GFF1193 at 445.165 kb on + strand, within GFF1193 at 445.352 kb on + strand, within GFF1193 at 445.353 kb on - strand, within GFF1193 at 445.388 kb on + strand, within GFF1193 at 445.404 kb on + strand, within GFF1193 at 445.405 kb on - strand, within GFF1193 at 445.417 kb on + strand, within GFF1193 at 445.505 kb on + strand, within GFF1193 at 445.513 kb on + strand, within GFF1193 at 445.513 kb on + strand, within GFF1193 at 445.513 kb on + strand, within GFF1193 at 445.513 kb on + strand, within GFF1193 at 445.513 kb on + strand, within GFF1193 at 445.535 kb on - strand, within GFF1193 at 445.582 kb on + strand, within GFF1193 at 445.582 kb on + strand, within GFF1193 at 445.582 kb on + strand, within GFF1193 at 445.583 kb on - strand, within GFF1193 at 445.586 kb on + strand, within GFF1193 at 445.587 kb on - strand, within GFF1193 at 445.587 kb on - strand, within GFF1193 at 445.587 kb on - strand, within GFF1193 at 445.618 kb on + strand, within GFF1193 at 445.618 kb on + strand, within GFF1193 at 445.781 kb on - strand at 445.807 kb on - strand at 445.807 kb on - strand at 445.820 kb on - strand at 445.857 kb on + strand at 445.857 kb on + strand at 445.903 kb on - strand at 445.906 kb on + strand at 445.906 kb on + strand at 445.906 kb on + strand at 445.906 kb on + strand at 445.906 kb on + strand at 445.906 kb on + strand at 445.906 kb on + strand at 445.906 kb on + strand at 445.906 kb on + strand at 445.906 kb on + strand at 445.906 kb on + strand at 445.907 kb on - strand at 445.907 kb on - strand at 445.907 kb on - strand at 445.907 kb on - strand at 445.927 kb on - strand at 446.007 kb on + strand, within GFF1194 at 446.007 kb on + strand, within GFF1194 at 446.007 kb on + strand, within GFF1194 at 446.008 kb on - strand, within GFF1194 at 446.008 kb on - strand, within GFF1194 at 446.013 kb on + strand, within GFF1194 at 446.014 kb on - strand, within GFF1194 at 446.019 kb on + strand, within GFF1194 at 446.040 kb on + strand, within GFF1194 at 446.164 kb on + strand, within GFF1194 at 446.165 kb on - strand, within GFF1194 at 446.165 kb on - strand, within GFF1194 at 446.179 kb on + strand, within GFF1194 at 446.179 kb on + strand, within GFF1194 at 446.181 kb on + strand, within GFF1194 at 446.296 kb on + strand, within GFF1194 at 446.297 kb on - strand, within GFF1194 at 446.348 kb on - strand, within GFF1194 at 446.464 kb on + strand, within GFF1194 at 446.464 kb on + strand, within GFF1194 at 446.464 kb on + strand, within GFF1194 at 446.465 kb on - strand, within GFF1194 at 446.467 kb on + strand, within GFF1194 at 446.467 kb on + strand, within GFF1194 at 446.467 kb on + strand, within GFF1194 at 446.467 kb on + strand, within GFF1194 at 446.468 kb on - strand, within GFF1194 at 446.468 kb on - strand, within GFF1194 at 446.501 kb on + strand, within GFF1194 at 446.522 kb on + strand, within GFF1194 at 446.522 kb on + strand, within GFF1194 at 446.522 kb on + strand, within GFF1194 at 446.522 kb on + strand, within GFF1194 at 446.522 kb on + strand, within GFF1194 at 446.523 kb on - strand, within GFF1194 at 446.526 kb on + strand, within GFF1194 at 446.526 kb on + strand, within GFF1194 at 446.526 kb on + strand, within GFF1194 at 446.527 kb on - strand, within GFF1194 at 446.527 kb on - strand, within GFF1194 at 446.553 kb on + strand, within GFF1194 at 446.553 kb on + strand, within GFF1194 at 446.553 kb on + strand, within GFF1194 at 446.554 kb on - strand, within GFF1194 at 446.556 kb on + strand, within GFF1194 at 446.556 kb on + strand, within GFF1194 at 446.557 kb on - strand, within GFF1194 at 446.637 kb on + strand, within GFF1194 at 446.654 kb on - strand, within GFF1194 at 446.801 kb on + strand, within GFF1194
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 443,661 - GFF1191 0.76 -1.0 443,661 - GFF1191 0.76 -1.0 443,796 - GFF1191 0.88 -1.3 443,937 + -1.0 443,938 - -1.3 443,938 - -0.2 443,944 - +1.0 444,435 - -0.8 444,435 - +0.0 444,448 + -1.0 444,467 + +0.3 444,467 + +0.4 444,467 + -0.4 444,467 + -1.2 444,467 + -0.1 444,467 + -0.3 444,468 - -0.5 444,468 - -1.3 444,468 - -1.6 444,468 - +1.2 444,488 + -1.0 444,489 - +0.5 444,496 + -2.0 444,500 + -0.7 444,501 - -0.3 444,528 + -0.2 444,533 - -0.5 444,550 + -0.6 444,596 + +0.0 444,597 - +0.0 444,597 - -0.3 444,597 - +0.7 444,600 + +0.0 444,601 - -0.8 444,601 - -0.5 444,601 - +0.4 444,601 - -0.9 444,601 - +0.6 444,601 - -1.3 444,620 + -0.6 444,620 + -0.8 444,620 + -1.4 444,622 + +0.6 444,622 + -0.3 444,622 + +0.3 444,622 + -0.2 444,622 + -2.0 444,622 + -1.3 444,623 - -0.4 444,623 - +0.1 444,649 + -0.3 444,649 + -0.6 444,678 + -1.1 444,678 + +0.3 444,678 + -1.3 444,679 - -2.0 444,679 - -1.6 444,679 - -0.9 444,746 + -0.9 444,813 + GFF1193 0.15 -0.9 444,813 + GFF1193 0.15 -0.5 444,813 + GFF1193 0.15 -1.6 444,817 + GFF1193 0.16 -1.0 444,817 + GFF1193 0.16 -0.3 444,817 + GFF1193 0.16 -0.4 444,871 + GFF1193 0.20 -1.5 444,916 + GFF1193 0.24 -1.0 444,916 + GFF1193 0.24 -1.8 444,916 + GFF1193 0.24 +0.7 444,917 - GFF1193 0.24 -0.8 444,972 + GFF1193 0.28 -0.4 444,975 + GFF1193 0.29 -1.0 444,975 + GFF1193 0.29 -2.0 445,014 + GFF1193 0.32 -1.3 445,014 + GFF1193 0.32 -2.5 445,015 - GFF1193 0.32 -1.0 445,044 + GFF1193 0.34 +0.2 445,114 + GFF1193 0.40 -1.3 445,142 + GFF1193 0.42 -0.6 445,165 + GFF1193 0.44 +0.7 445,352 + GFF1193 0.60 -1.0 445,353 - GFF1193 0.60 +0.6 445,388 + GFF1193 0.63 -0.6 445,404 + GFF1193 0.64 -1.0 445,405 - GFF1193 0.64 +0.5 445,417 + GFF1193 0.65 -0.6 445,505 + GFF1193 0.72 -1.2 445,513 + GFF1193 0.73 +0.0 445,513 + GFF1193 0.73 -1.0 445,513 + GFF1193 0.73 -1.6 445,513 + GFF1193 0.73 +0.0 445,513 + GFF1193 0.73 -2.4 445,535 - GFF1193 0.75 -2.2 445,582 + GFF1193 0.79 -1.0 445,582 + GFF1193 0.79 -0.5 445,582 + GFF1193 0.79 -1.8 445,583 - GFF1193 0.79 -0.1 445,586 + GFF1193 0.79 -0.8 445,587 - GFF1193 0.79 +0.8 445,587 - GFF1193 0.79 -1.3 445,587 - GFF1193 0.79 +0.2 445,618 + GFF1193 0.82 -1.0 445,618 + GFF1193 0.82 -0.8 445,781 - -2.2 445,807 - -0.9 445,807 - -0.3 445,820 - +0.0 445,857 + -0.9 445,857 + -0.3 445,903 - -1.0 445,906 + -1.0 445,906 + -0.2 445,906 + -0.8 445,906 + -1.2 445,906 + -1.6 445,906 + -1.8 445,906 + -1.0 445,906 + -0.3 445,906 + +1.6 445,906 + -1.0 445,906 + +0.0 445,907 - -1.8 445,907 - -1.3 445,907 - -0.2 445,907 - -0.5 445,927 - -0.6 446,007 + GFF1194 0.10 -0.2 446,007 + GFF1194 0.10 +0.0 446,007 + GFF1194 0.10 -1.7 446,008 - GFF1194 0.10 -1.0 446,008 - GFF1194 0.10 -0.5 446,013 + GFF1194 0.11 -1.2 446,014 - GFF1194 0.11 -0.6 446,019 + GFF1194 0.11 -1.3 446,040 + GFF1194 0.12 -1.0 446,164 + GFF1194 0.20 -2.8 446,165 - GFF1194 0.20 -0.8 446,165 - GFF1194 0.20 -1.0 446,179 + GFF1194 0.21 -2.1 446,179 + GFF1194 0.21 -0.1 446,181 + GFF1194 0.21 -1.6 446,296 + GFF1194 0.28 -0.6 446,297 - GFF1194 0.28 -1.5 446,348 - GFF1194 0.31 -1.2 446,464 + GFF1194 0.38 -1.3 446,464 + GFF1194 0.38 -1.3 446,464 + GFF1194 0.38 +0.6 446,465 - GFF1194 0.38 -2.6 446,467 + GFF1194 0.38 -2.2 446,467 + GFF1194 0.38 -1.0 446,467 + GFF1194 0.38 -0.3 446,467 + GFF1194 0.38 +1.3 446,468 - GFF1194 0.38 +0.7 446,468 - GFF1194 0.38 +0.0 446,501 + GFF1194 0.40 -0.9 446,522 + GFF1194 0.41 -1.0 446,522 + GFF1194 0.41 +0.5 446,522 + GFF1194 0.41 -2.2 446,522 + GFF1194 0.41 -1.0 446,522 + GFF1194 0.41 -1.1 446,523 - GFF1194 0.41 -1.3 446,526 + GFF1194 0.42 -1.3 446,526 + GFF1194 0.42 +0.0 446,526 + GFF1194 0.42 +0.7 446,527 - GFF1194 0.42 -0.8 446,527 - GFF1194 0.42 -1.3 446,553 + GFF1194 0.43 -0.6 446,553 + GFF1194 0.43 +0.0 446,553 + GFF1194 0.43 +0.6 446,554 - GFF1194 0.43 -2.7 446,556 + GFF1194 0.43 -2.0 446,556 + GFF1194 0.43 -2.0 446,557 - GFF1194 0.43 -1.0 446,637 + GFF1194 0.48 -1.5 446,654 - GFF1194 0.49 -0.6 446,801 + GFF1194 0.58 -1.8
Or see this region's nucleotide sequence