Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1167 and GFF1168 are separated by 37 nucleotides GFF1168 and GFF1169 are separated by 118 nucleotides GFF1169 and GFF1170 are separated by 112 nucleotides GFF1170 and GFF1171 are separated by 1 nucleotides
GFF1167 - hypothetical protein, at 417,151 to 418,299
GFF1167
GFF1168 - hypothetical protein, at 418,337 to 418,486
GFF1168
GFF1169 - Methanol dehydrogenase [cytochrome c] subunit 1, at 418,605 to 420,473
GFF1169
GFF1170 - Small ribosomal subunit biogenesis GTPase RsgA, at 420,586 to 421,461
GFF1170
GFF1171 - hypothetical protein, at 421,463 to 421,762
GFF1171
Position (kb) 418
419
420
421 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 417.679 kb on + strand, within GFF1167 at 417.680 kb on - strand, within GFF1167 at 417.680 kb on - strand, within GFF1167 at 417.682 kb on + strand, within GFF1167 at 417.683 kb on - strand, within GFF1167 at 417.683 kb on - strand, within GFF1167 at 417.683 kb on - strand, within GFF1167 at 417.683 kb on - strand, within GFF1167 at 417.683 kb on - strand, within GFF1167 at 417.683 kb on - strand, within GFF1167 at 417.687 kb on - strand, within GFF1167 at 417.687 kb on - strand, within GFF1167 at 417.753 kb on + strand, within GFF1167 at 417.753 kb on + strand, within GFF1167 at 417.754 kb on - strand, within GFF1167 at 417.895 kb on - strand, within GFF1167 at 417.895 kb on - strand, within GFF1167 at 417.919 kb on + strand, within GFF1167 at 417.920 kb on - strand, within GFF1167 at 417.920 kb on - strand, within GFF1167 at 417.920 kb on - strand, within GFF1167 at 417.920 kb on - strand, within GFF1167 at 417.920 kb on - strand, within GFF1167 at 418.040 kb on + strand, within GFF1167 at 418.041 kb on - strand, within GFF1167 at 418.071 kb on - strand, within GFF1167 at 418.165 kb on + strand, within GFF1167 at 418.166 kb on - strand, within GFF1167 at 418.166 kb on - strand, within GFF1167 at 418.166 kb on - strand, within GFF1167 at 418.170 kb on + strand, within GFF1167 at 418.171 kb on - strand, within GFF1167 at 418.171 kb on - strand, within GFF1167 at 418.202 kb on - strand at 418.202 kb on - strand at 418.202 kb on - strand at 418.221 kb on + strand at 418.239 kb on - strand at 418.241 kb on + strand at 418.316 kb on - strand at 418.331 kb on + strand at 418.332 kb on - strand at 418.332 kb on - strand at 418.332 kb on - strand at 418.332 kb on - strand at 418.417 kb on + strand, within GFF1168 at 418.417 kb on + strand, within GFF1168 at 418.451 kb on + strand, within GFF1168 at 418.452 kb on - strand, within GFF1168 at 418.457 kb on + strand, within GFF1168 at 418.461 kb on - strand, within GFF1168 at 418.466 kb on + strand, within GFF1168 at 418.489 kb on + strand at 418.489 kb on + strand at 418.489 kb on + strand at 418.489 kb on + strand at 418.489 kb on + strand at 418.489 kb on + strand at 418.489 kb on + strand at 418.489 kb on + strand at 418.490 kb on - strand at 418.490 kb on - strand at 418.490 kb on - strand at 418.491 kb on + strand at 418.491 kb on + strand at 418.525 kb on + strand at 418.526 kb on - strand at 418.542 kb on + strand at 418.542 kb on + strand at 418.573 kb on + strand at 418.595 kb on + strand at 418.595 kb on + strand at 418.596 kb on - strand at 418.597 kb on + strand at 418.597 kb on + strand at 418.597 kb on + strand at 418.597 kb on + strand at 418.597 kb on + strand at 418.597 kb on + strand at 418.597 kb on + strand at 418.597 kb on + strand at 418.598 kb on - strand at 418.598 kb on - strand at 418.598 kb on - strand at 418.598 kb on - strand at 418.601 kb on + strand at 418.601 kb on + strand at 418.601 kb on + strand at 418.736 kb on + strand at 418.736 kb on + strand at 418.750 kb on - strand at 418.869 kb on + strand, within GFF1169 at 418.869 kb on + strand, within GFF1169 at 418.869 kb on + strand, within GFF1169 at 418.869 kb on + strand, within GFF1169 at 418.870 kb on - strand, within GFF1169 at 418.870 kb on - strand, within GFF1169 at 418.870 kb on - strand, within GFF1169 at 418.871 kb on + strand, within GFF1169 at 418.897 kb on + strand, within GFF1169 at 418.897 kb on + strand, within GFF1169 at 418.897 kb on + strand, within GFF1169 at 418.897 kb on + strand, within GFF1169 at 418.897 kb on + strand, within GFF1169 at 418.900 kb on - strand, within GFF1169 at 418.941 kb on + strand, within GFF1169 at 418.942 kb on - strand, within GFF1169 at 419.126 kb on + strand, within GFF1169 at 419.126 kb on + strand, within GFF1169 at 419.194 kb on + strand, within GFF1169 at 419.194 kb on + strand, within GFF1169 at 419.214 kb on + strand, within GFF1169 at 419.214 kb on + strand, within GFF1169 at 419.250 kb on + strand, within GFF1169 at 419.288 kb on + strand, within GFF1169 at 419.313 kb on + strand, within GFF1169 at 419.331 kb on + strand, within GFF1169 at 419.426 kb on + strand, within GFF1169 at 419.426 kb on + strand, within GFF1169 at 419.510 kb on + strand, within GFF1169 at 419.563 kb on + strand, within GFF1169 at 419.563 kb on + strand, within GFF1169 at 419.715 kb on + strand, within GFF1169 at 419.715 kb on + strand, within GFF1169 at 419.748 kb on + strand, within GFF1169 at 419.824 kb on + strand, within GFF1169 at 419.881 kb on - strand, within GFF1169 at 419.882 kb on + strand, within GFF1169 at 419.882 kb on + strand, within GFF1169 at 419.888 kb on + strand, within GFF1169 at 419.918 kb on + strand, within GFF1169 at 419.918 kb on + strand, within GFF1169 at 419.940 kb on + strand, within GFF1169 at 419.964 kb on + strand, within GFF1169 at 419.964 kb on + strand, within GFF1169 at 419.983 kb on + strand, within GFF1169 at 419.983 kb on + strand, within GFF1169 at 419.983 kb on + strand, within GFF1169 at 419.983 kb on + strand, within GFF1169 at 419.983 kb on + strand, within GFF1169 at 419.988 kb on - strand, within GFF1169 at 419.995 kb on - strand, within GFF1169 at 420.190 kb on - strand, within GFF1169 at 420.194 kb on + strand, within GFF1169 at 420.194 kb on + strand, within GFF1169 at 420.194 kb on + strand, within GFF1169 at 420.312 kb on + strand at 420.320 kb on + strand at 420.460 kb on + strand at 420.472 kb on - strand at 420.486 kb on - strand at 420.519 kb on + strand at 420.519 kb on + strand at 420.520 kb on - strand at 420.552 kb on - strand at 420.552 kb on - strand at 420.555 kb on + strand at 420.555 kb on + strand at 420.555 kb on + strand at 420.556 kb on - strand at 420.556 kb on - strand at 420.556 kb on - strand at 420.558 kb on - strand at 420.577 kb on + strand at 420.632 kb on - strand at 420.638 kb on - strand at 420.703 kb on - strand, within GFF1170 at 420.736 kb on - strand, within GFF1170 at 420.789 kb on - strand, within GFF1170 at 420.932 kb on - strand, within GFF1170 at 420.943 kb on - strand, within GFF1170 at 420.943 kb on - strand, within GFF1170 at 420.977 kb on - strand, within GFF1170 at 421.099 kb on - strand, within GFF1170 at 421.387 kb on - strand at 421.387 kb on - strand at 421.412 kb on - strand at 421.419 kb on - strand at 421.465 kb on - strand at 421.465 kb on - strand at 421.465 kb on - strand at 421.473 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 417,679 + GFF1167 0.46 -0.4 417,680 - GFF1167 0.46 +0.0 417,680 - GFF1167 0.46 -0.2 417,682 + GFF1167 0.46 -1.0 417,683 - GFF1167 0.46 +0.0 417,683 - GFF1167 0.46 -2.3 417,683 - GFF1167 0.46 -0.6 417,683 - GFF1167 0.46 +0.0 417,683 - GFF1167 0.46 -1.3 417,683 - GFF1167 0.46 +0.7 417,687 - GFF1167 0.47 +0.0 417,687 - GFF1167 0.47 -2.4 417,753 + GFF1167 0.52 +0.6 417,753 + GFF1167 0.52 +0.0 417,754 - GFF1167 0.52 -1.0 417,895 - GFF1167 0.65 -0.9 417,895 - GFF1167 0.65 +0.4 417,919 + GFF1167 0.67 -1.0 417,920 - GFF1167 0.67 +0.7 417,920 - GFF1167 0.67 +0.2 417,920 - GFF1167 0.67 +0.6 417,920 - GFF1167 0.67 -0.3 417,920 - GFF1167 0.67 -1.3 418,040 + GFF1167 0.77 -0.4 418,041 - GFF1167 0.77 +0.0 418,071 - GFF1167 0.80 -0.2 418,165 + GFF1167 0.88 +1.0 418,166 - GFF1167 0.88 +0.0 418,166 - GFF1167 0.88 -1.0 418,166 - GFF1167 0.88 -1.0 418,170 + GFF1167 0.89 -1.3 418,171 - GFF1167 0.89 -1.0 418,171 - GFF1167 0.89 -0.2 418,202 - -1.6 418,202 - -1.2 418,202 - -1.0 418,221 + -1.6 418,239 - +0.0 418,241 + -1.3 418,316 - -0.6 418,331 + +1.0 418,332 - -0.5 418,332 - -0.6 418,332 - -1.3 418,332 - -1.0 418,417 + GFF1168 0.53 -1.0 418,417 + GFF1168 0.53 -1.0 418,451 + GFF1168 0.76 +0.0 418,452 - GFF1168 0.77 +0.6 418,457 + GFF1168 0.80 -1.7 418,461 - GFF1168 0.83 -0.9 418,466 + GFF1168 0.86 -0.6 418,489 + -1.0 418,489 + +0.6 418,489 + -1.0 418,489 + -4.0 418,489 + -1.0 418,489 + -1.3 418,489 + -0.7 418,489 + -0.2 418,490 - +0.0 418,490 - -1.2 418,490 - -1.0 418,491 + +0.0 418,491 + +0.2 418,525 + +1.0 418,526 - +0.0 418,542 + +0.0 418,542 + -0.7 418,573 + -0.5 418,595 + -1.0 418,595 + +0.6 418,596 - -0.3 418,597 + -1.3 418,597 + -1.6 418,597 + -0.6 418,597 + -1.0 418,597 + -1.3 418,597 + -1.5 418,597 + -0.7 418,597 + +0.0 418,598 - -0.6 418,598 - +1.6 418,598 - +0.0 418,598 - +1.3 418,601 + +0.0 418,601 + +0.6 418,601 + -1.3 418,736 + -1.8 418,736 + -0.7 418,750 - -1.6 418,869 + GFF1169 0.14 -1.3 418,869 + GFF1169 0.14 -2.0 418,869 + GFF1169 0.14 -1.8 418,869 + GFF1169 0.14 -1.3 418,870 - GFF1169 0.14 -0.6 418,870 - GFF1169 0.14 -1.3 418,870 - GFF1169 0.14 -1.0 418,871 + GFF1169 0.14 +0.7 418,897 + GFF1169 0.16 -1.1 418,897 + GFF1169 0.16 -0.7 418,897 + GFF1169 0.16 +0.2 418,897 + GFF1169 0.16 -1.0 418,897 + GFF1169 0.16 -0.3 418,900 - GFF1169 0.16 -2.2 418,941 + GFF1169 0.18 -0.4 418,942 - GFF1169 0.18 +0.0 419,126 + GFF1169 0.28 -1.6 419,126 + GFF1169 0.28 -1.0 419,194 + GFF1169 0.32 -2.2 419,194 + GFF1169 0.32 -0.6 419,214 + GFF1169 0.33 -1.7 419,214 + GFF1169 0.33 -1.6 419,250 + GFF1169 0.35 -1.3 419,288 + GFF1169 0.37 -0.7 419,313 + GFF1169 0.38 -0.7 419,331 + GFF1169 0.39 -1.0 419,426 + GFF1169 0.44 -1.3 419,426 + GFF1169 0.44 -1.0 419,510 + GFF1169 0.48 -1.8 419,563 + GFF1169 0.51 -0.7 419,563 + GFF1169 0.51 +0.5 419,715 + GFF1169 0.59 +0.1 419,715 + GFF1169 0.59 +0.0 419,748 + GFF1169 0.61 -1.6 419,824 + GFF1169 0.65 -0.2 419,881 - GFF1169 0.68 -1.0 419,882 + GFF1169 0.68 -1.6 419,882 + GFF1169 0.68 -0.4 419,888 + GFF1169 0.69 -0.6 419,918 + GFF1169 0.70 -0.6 419,918 + GFF1169 0.70 -0.6 419,940 + GFF1169 0.71 +0.6 419,964 + GFF1169 0.73 +1.3 419,964 + GFF1169 0.73 -0.3 419,983 + GFF1169 0.74 -1.3 419,983 + GFF1169 0.74 -0.4 419,983 + GFF1169 0.74 -1.3 419,983 + GFF1169 0.74 -1.0 419,983 + GFF1169 0.74 -1.0 419,988 - GFF1169 0.74 -1.0 419,995 - GFF1169 0.74 +0.4 420,190 - GFF1169 0.85 -1.4 420,194 + GFF1169 0.85 -1.0 420,194 + GFF1169 0.85 -0.6 420,194 + GFF1169 0.85 -0.8 420,312 + +0.6 420,320 + -1.2 420,460 + -1.0 420,472 - -1.0 420,486 - -1.0 420,519 + +0.8 420,519 + -0.3 420,520 - -0.3 420,552 - +1.0 420,552 - -0.3 420,555 + -1.0 420,555 + -0.6 420,555 + -0.2 420,556 - -1.9 420,556 - -1.3 420,556 - +1.0 420,558 - -0.3 420,577 + -1.0 420,632 - -2.0 420,638 - +0.0 420,703 - GFF1170 0.13 -0.3 420,736 - GFF1170 0.17 -1.0 420,789 - GFF1170 0.23 -1.8 420,932 - GFF1170 0.39 +0.0 420,943 - GFF1170 0.41 -1.0 420,943 - GFF1170 0.41 -0.8 420,977 - GFF1170 0.45 -0.2 421,099 - GFF1170 0.59 -0.6 421,387 - +0.0 421,387 - -2.9 421,412 - +0.3 421,419 - +0.0 421,465 - -0.6 421,465 - -1.2 421,465 - -0.7 421,473 + +0.6
Or see this region's nucleotide sequence