Strain Fitness in Methylophilus sp. DMC18 around GFF1141

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1139 and GFF1140 are separated by 67 nucleotidesGFF1140 and GFF1141 overlap by 1 nucleotidesGFF1141 and GFF1142 are separated by 70 nucleotidesGFF1142 and GFF1143 are separated by 52 nucleotides GFF1139 - hypothetical protein, at 392,155 to 392,601 GFF1139 GFF1140 - hypothetical protein, at 392,669 to 393,019 GFF1140 GFF1141 - Persistence and stress-resistance toxin PasT, at 393,019 to 393,453 GFF1141 GFF1142 - SsrA-binding protein, at 393,524 to 393,976 GFF1142 GFF1143 - Bifunctional NAD(P)H-hydrate repair enzyme Nnr, at 394,029 to 394,871 GFF1143 Position (kb) 393 394Strain fitness (log2 ratio) -3 -2 -1 0 1at 392.091 kb on + strandat 392.092 kb on - strandat 392.092 kb on - strandat 392.092 kb on - strandat 392.092 kb on - strandat 392.092 kb on - strandat 392.095 kb on + strandat 392.122 kb on + strandat 392.200 kb on - strand, within GFF1139at 392.200 kb on - strand, within GFF1139at 392.223 kb on + strand, within GFF1139at 392.223 kb on + strand, within GFF1139at 392.231 kb on - strand, within GFF1139at 392.238 kb on + strand, within GFF1139at 392.464 kb on + strand, within GFF1139at 392.473 kb on + strand, within GFF1139at 392.474 kb on - strand, within GFF1139at 392.524 kb on + strand, within GFF1139at 392.525 kb on - strand, within GFF1139at 392.525 kb on - strand, within GFF1139at 392.600 kb on - strandat 392.600 kb on - strandat 392.662 kb on + strandat 392.662 kb on + strandat 392.662 kb on + strandat 392.663 kb on - strandat 392.663 kb on - strandat 392.663 kb on - strandat 392.666 kb on + strandat 392.666 kb on + strandat 392.666 kb on + strandat 392.666 kb on + strandat 392.667 kb on - strandat 392.667 kb on - strandat 392.667 kb on - strandat 392.667 kb on - strandat 392.710 kb on + strand, within GFF1140at 392.710 kb on + strand, within GFF1140at 392.831 kb on + strand, within GFF1140at 392.831 kb on + strand, within GFF1140at 392.831 kb on + strand, within GFF1140at 392.832 kb on - strand, within GFF1140at 392.832 kb on - strand, within GFF1140at 392.952 kb on + strand, within GFF1140at 392.963 kb on + strand, within GFF1140at 392.963 kb on + strand, within GFF1140at 392.963 kb on + strand, within GFF1140at 392.963 kb on + strand, within GFF1140at 392.963 kb on + strand, within GFF1140at 392.963 kb on + strand, within GFF1140at 392.963 kb on + strand, within GFF1140at 392.963 kb on + strand, within GFF1140at 392.963 kb on + strand, within GFF1140at 392.963 kb on + strand, within GFF1140at 392.963 kb on + strand, within GFF1140at 392.964 kb on - strand, within GFF1140at 392.964 kb on - strand, within GFF1140at 392.964 kb on - strand, within GFF1140at 392.964 kb on - strand, within GFF1140at 392.964 kb on - strand, within GFF1140at 392.964 kb on - strand, within GFF1140at 393.020 kb on + strandat 393.020 kb on + strandat 393.020 kb on + strandat 393.021 kb on - strandat 393.078 kb on + strand, within GFF1141at 393.131 kb on + strand, within GFF1141at 393.131 kb on + strand, within GFF1141at 393.131 kb on + strand, within GFF1141at 393.131 kb on + strand, within GFF1141at 393.131 kb on + strand, within GFF1141at 393.131 kb on + strand, within GFF1141at 393.132 kb on - strand, within GFF1141at 393.132 kb on - strand, within GFF1141at 393.132 kb on - strand, within GFF1141at 393.175 kb on + strand, within GFF1141at 393.176 kb on - strand, within GFF1141at 393.177 kb on + strand, within GFF1141at 393.177 kb on + strand, within GFF1141at 393.178 kb on - strand, within GFF1141at 393.178 kb on - strand, within GFF1141at 393.280 kb on + strand, within GFF1141at 393.374 kb on + strand, within GFF1141at 393.374 kb on + strand, within GFF1141at 393.374 kb on + strand, within GFF1141at 393.375 kb on - strand, within GFF1141at 393.505 kb on - strandat 393.681 kb on - strand, within GFF1142at 393.859 kb on - strand, within GFF1142at 394.001 kb on + strandat 394.104 kb on + strandat 394.105 kb on - strandat 394.105 kb on - strandat 394.277 kb on + strand, within GFF1143at 394.278 kb on - strand, within GFF1143at 394.278 kb on - strand, within GFF1143at 394.280 kb on + strand, within GFF1143at 394.281 kb on - strand, within GFF1143at 394.281 kb on - strand, within GFF1143at 394.335 kb on + strand, within GFF1143at 394.335 kb on + strand, within GFF1143at 394.335 kb on + strand, within GFF1143at 394.335 kb on + strand, within GFF1143at 394.335 kb on + strand, within GFF1143at 394.335 kb on + strand, within GFF1143at 394.336 kb on - strand, within GFF1143at 394.336 kb on - strand, within GFF1143at 394.336 kb on - strand, within GFF1143at 394.336 kb on - strand, within GFF1143at 394.336 kb on - strand, within GFF1143at 394.336 kb on - strand, within GFF1143at 394.346 kb on + strand, within GFF1143at 394.359 kb on - strand, within GFF1143at 394.359 kb on - strand, within GFF1143at 394.431 kb on + strand, within GFF1143at 394.431 kb on + strand, within GFF1143at 394.432 kb on - strand, within GFF1143at 394.432 kb on - strand, within GFF1143at 394.432 kb on - strand, within GFF1143at 394.432 kb on - strand, within GFF1143at 394.432 kb on - strand, within GFF1143at 394.432 kb on - strand, within GFF1143at 394.434 kb on + strand, within GFF1143at 394.434 kb on + strand, within GFF1143at 394.434 kb on + strand, within GFF1143at 394.434 kb on + strand, within GFF1143at 394.434 kb on + strand, within GFF1143at 394.435 kb on - strand, within GFF1143at 394.435 kb on - strand, within GFF1143at 394.435 kb on - strand, within GFF1143at 394.435 kb on - strand, within GFF1143at 394.435 kb on - strand, within GFF1143at 394.435 kb on - strand, within GFF1143at 394.435 kb on - strand, within GFF1143at 394.435 kb on - strand, within GFF1143at 394.435 kb on - strand, within GFF1143at 394.435 kb on - strand, within GFF1143

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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392,091 + +0.6
392,092 - -1.0
392,092 - -0.2
392,092 - +0.2
392,092 - -1.3
392,092 - +1.0
392,095 + -0.7
392,122 + -0.6
392,200 - GFF1139 0.10 +0.8
392,200 - GFF1139 0.10 +0.0
392,223 + GFF1139 0.15 -0.7
392,223 + GFF1139 0.15 -0.3
392,231 - GFF1139 0.17 -0.1
392,238 + GFF1139 0.19 -0.9
392,464 + GFF1139 0.69 -0.0
392,473 + GFF1139 0.71 -0.4
392,474 - GFF1139 0.71 +0.5
392,524 + GFF1139 0.83 -0.8
392,525 - GFF1139 0.83 -1.1
392,525 - GFF1139 0.83 -0.6
392,600 - -0.4
392,600 - +0.6
392,662 + -1.0
392,662 + +0.4
392,662 + -1.0
392,663 - -0.1
392,663 - -0.6
392,663 - +0.7
392,666 + -1.3
392,666 + -1.0
392,666 + -0.2
392,666 + +0.3
392,667 - -0.1
392,667 - -3.2
392,667 - -0.1
392,667 - -1.1
392,710 + GFF1140 0.12 +0.1
392,710 + GFF1140 0.12 -1.3
392,831 + GFF1140 0.46 -0.4
392,831 + GFF1140 0.46 +0.3
392,831 + GFF1140 0.46 -0.1
392,832 - GFF1140 0.46 -0.3
392,832 - GFF1140 0.46 -0.5
392,952 + GFF1140 0.81 -1.3
392,963 + GFF1140 0.84 -1.0
392,963 + GFF1140 0.84 -0.6
392,963 + GFF1140 0.84 -0.6
392,963 + GFF1140 0.84 -0.7
392,963 + GFF1140 0.84 -0.3
392,963 + GFF1140 0.84 +0.8
392,963 + GFF1140 0.84 -1.1
392,963 + GFF1140 0.84 +0.0
392,963 + GFF1140 0.84 -0.7
392,963 + GFF1140 0.84 +0.6
392,963 + GFF1140 0.84 +0.0
392,964 - GFF1140 0.84 +1.7
392,964 - GFF1140 0.84 -0.2
392,964 - GFF1140 0.84 -1.2
392,964 - GFF1140 0.84 -0.8
392,964 - GFF1140 0.84 +0.7
392,964 - GFF1140 0.84 -1.6
393,020 + +0.4
393,020 + -0.9
393,020 + -0.2
393,021 - -0.2
393,078 + GFF1141 0.14 -1.2
393,131 + GFF1141 0.26 -0.8
393,131 + GFF1141 0.26 -1.3
393,131 + GFF1141 0.26 -1.0
393,131 + GFF1141 0.26 -1.3
393,131 + GFF1141 0.26 -0.8
393,131 + GFF1141 0.26 -0.8
393,132 - GFF1141 0.26 -0.4
393,132 - GFF1141 0.26 +0.6
393,132 - GFF1141 0.26 +1.3
393,175 + GFF1141 0.36 -0.5
393,176 - GFF1141 0.36 -0.4
393,177 + GFF1141 0.36 -1.0
393,177 + GFF1141 0.36 +0.3
393,178 - GFF1141 0.37 -1.3
393,178 - GFF1141 0.37 -1.0
393,280 + GFF1141 0.60 +0.6
393,374 + GFF1141 0.82 -0.8
393,374 + GFF1141 0.82 -1.0
393,374 + GFF1141 0.82 +0.3
393,375 - GFF1141 0.82 -0.6
393,505 - -1.8
393,681 - GFF1142 0.35 -1.3
393,859 - GFF1142 0.74 -1.0
394,001 + -0.7
394,104 + -1.0
394,105 - +1.0
394,105 - -1.2
394,277 + GFF1143 0.29 -0.3
394,278 - GFF1143 0.30 -1.0
394,278 - GFF1143 0.30 +0.2
394,280 + GFF1143 0.30 -1.0
394,281 - GFF1143 0.30 +0.6
394,281 - GFF1143 0.30 +1.0
394,335 + GFF1143 0.36 -0.2
394,335 + GFF1143 0.36 -0.8
394,335 + GFF1143 0.36 -0.4
394,335 + GFF1143 0.36 -1.0
394,335 + GFF1143 0.36 -0.2
394,335 + GFF1143 0.36 +0.8
394,336 - GFF1143 0.36 +0.0
394,336 - GFF1143 0.36 -1.3
394,336 - GFF1143 0.36 -0.5
394,336 - GFF1143 0.36 -0.1
394,336 - GFF1143 0.36 -1.7
394,336 - GFF1143 0.36 -0.1
394,346 + GFF1143 0.38 +0.0
394,359 - GFF1143 0.39 -0.4
394,359 - GFF1143 0.39 -1.0
394,431 + GFF1143 0.48 -0.9
394,431 + GFF1143 0.48 +0.0
394,432 - GFF1143 0.48 +1.2
394,432 - GFF1143 0.48 +0.4
394,432 - GFF1143 0.48 +1.3
394,432 - GFF1143 0.48 -1.0
394,432 - GFF1143 0.48 -1.6
394,432 - GFF1143 0.48 +0.2
394,434 + GFF1143 0.48 -0.4
394,434 + GFF1143 0.48 -0.4
394,434 + GFF1143 0.48 +0.4
394,434 + GFF1143 0.48 -1.0
394,434 + GFF1143 0.48 +0.1
394,435 - GFF1143 0.48 -0.5
394,435 - GFF1143 0.48 -0.1
394,435 - GFF1143 0.48 -0.2
394,435 - GFF1143 0.48 -1.3
394,435 - GFF1143 0.48 -0.4
394,435 - GFF1143 0.48 -0.2
394,435 - GFF1143 0.48 -1.4
394,435 - GFF1143 0.48 -0.8
394,435 - GFF1143 0.48 -0.7
394,435 - GFF1143 0.48 -0.8

Or see this region's nucleotide sequence