Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1130 and GFF1131 are separated by 30 nucleotides GFF1131 and GFF1132 are separated by 83 nucleotides GFF1132 and GFF1133 are separated by 113 nucleotides
GFF1130 - Adaptive-response sensory-kinase SasA, at 382,105 to 383,484
GFF1130
GFF1131 - Transcriptional regulatory protein OmpR, at 383,515 to 384,282
GFF1131
GFF1132 - hypothetical protein, at 384,366 to 384,827
GFF1132
GFF1133 - putative ABC transporter ATP-binding protein YbiT, at 384,941 to 386,536
GFF1133
Position (kb) 383
384
385 Strain fitness (log2 ratio) -2
-1
0
1
2 at 382.722 kb on + strand, within GFF1130 at 382.723 kb on - strand, within GFF1130 at 382.741 kb on - strand, within GFF1130 at 382.810 kb on - strand, within GFF1130 at 382.810 kb on - strand, within GFF1130 at 382.837 kb on - strand, within GFF1130 at 382.837 kb on - strand, within GFF1130 at 382.840 kb on - strand, within GFF1130 at 382.840 kb on - strand, within GFF1130 at 382.872 kb on + strand, within GFF1130 at 382.873 kb on - strand, within GFF1130 at 382.921 kb on + strand, within GFF1130 at 382.921 kb on + strand, within GFF1130 at 382.939 kb on + strand, within GFF1130 at 382.940 kb on - strand, within GFF1130 at 382.981 kb on - strand, within GFF1130 at 382.981 kb on - strand, within GFF1130 at 382.981 kb on - strand, within GFF1130 at 382.991 kb on + strand, within GFF1130 at 383.036 kb on + strand, within GFF1130 at 383.037 kb on - strand, within GFF1130 at 383.127 kb on + strand, within GFF1130 at 383.127 kb on + strand, within GFF1130 at 383.128 kb on - strand, within GFF1130 at 383.128 kb on - strand, within GFF1130 at 383.178 kb on + strand, within GFF1130 at 383.179 kb on - strand, within GFF1130 at 383.179 kb on - strand, within GFF1130 at 383.256 kb on + strand, within GFF1130 at 383.256 kb on + strand, within GFF1130 at 383.257 kb on - strand, within GFF1130 at 383.311 kb on + strand, within GFF1130 at 383.311 kb on + strand, within GFF1130 at 383.311 kb on + strand, within GFF1130 at 383.312 kb on - strand, within GFF1130 at 383.420 kb on - strand at 383.424 kb on + strand at 383.492 kb on - strand at 383.516 kb on + strand at 383.517 kb on - strand at 383.517 kb on - strand at 383.517 kb on - strand at 383.521 kb on - strand at 383.526 kb on - strand at 383.526 kb on - strand at 383.526 kb on - strand at 383.526 kb on - strand at 383.545 kb on + strand at 383.546 kb on - strand at 383.546 kb on - strand at 383.770 kb on - strand, within GFF1131 at 383.770 kb on - strand, within GFF1131 at 383.963 kb on + strand, within GFF1131 at 383.963 kb on + strand, within GFF1131 at 383.964 kb on - strand, within GFF1131 at 383.964 kb on - strand, within GFF1131 at 383.964 kb on - strand, within GFF1131 at 383.964 kb on - strand, within GFF1131 at 384.048 kb on - strand, within GFF1131 at 384.048 kb on - strand, within GFF1131 at 384.048 kb on - strand, within GFF1131 at 384.117 kb on + strand, within GFF1131 at 384.196 kb on - strand, within GFF1131 at 384.282 kb on + strand at 384.283 kb on - strand at 384.283 kb on - strand at 384.310 kb on + strand at 384.470 kb on - strand, within GFF1132 at 384.470 kb on - strand, within GFF1132 at 384.476 kb on + strand, within GFF1132 at 384.521 kb on + strand, within GFF1132 at 384.558 kb on - strand, within GFF1132 at 384.570 kb on + strand, within GFF1132 at 384.570 kb on + strand, within GFF1132 at 384.571 kb on - strand, within GFF1132 at 384.608 kb on + strand, within GFF1132 at 384.623 kb on - strand, within GFF1132 at 384.669 kb on - strand, within GFF1132 at 384.808 kb on - strand at 384.870 kb on - strand at 384.872 kb on + strand at 384.872 kb on + strand at 384.873 kb on - strand at 384.873 kb on - strand at 384.887 kb on + strand at 384.920 kb on - strand at 384.930 kb on - strand at 384.930 kb on - strand at 384.930 kb on - strand at 384.943 kb on - strand at 384.943 kb on - strand at 384.967 kb on - strand at 384.967 kb on - strand at 384.975 kb on + strand at 384.975 kb on + strand at 384.975 kb on + strand at 384.976 kb on - strand at 384.976 kb on - strand at 384.976 kb on - strand at 385.022 kb on - strand at 385.084 kb on - strand at 385.136 kb on - strand, within GFF1133 at 385.179 kb on - strand, within GFF1133 at 385.179 kb on - strand, within GFF1133 at 385.179 kb on - strand, within GFF1133
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 382,722 + GFF1130 0.45 +0.4 382,723 - GFF1130 0.45 -1.2 382,741 - GFF1130 0.46 -2.3 382,810 - GFF1130 0.51 -0.5 382,810 - GFF1130 0.51 +0.0 382,837 - GFF1130 0.53 -0.1 382,837 - GFF1130 0.53 +0.2 382,840 - GFF1130 0.53 -0.6 382,840 - GFF1130 0.53 -0.6 382,872 + GFF1130 0.56 -0.2 382,873 - GFF1130 0.56 -2.3 382,921 + GFF1130 0.59 +0.3 382,921 + GFF1130 0.59 -0.1 382,939 + GFF1130 0.60 -0.1 382,940 - GFF1130 0.61 -1.0 382,981 - GFF1130 0.63 +1.3 382,981 - GFF1130 0.63 +0.0 382,981 - GFF1130 0.63 +0.4 382,991 + GFF1130 0.64 -0.6 383,036 + GFF1130 0.67 +0.6 383,037 - GFF1130 0.68 -0.7 383,127 + GFF1130 0.74 -0.1 383,127 + GFF1130 0.74 -0.6 383,128 - GFF1130 0.74 -1.6 383,128 - GFF1130 0.74 +1.4 383,178 + GFF1130 0.78 +0.6 383,179 - GFF1130 0.78 -1.4 383,179 - GFF1130 0.78 -1.2 383,256 + GFF1130 0.83 -1.3 383,256 + GFF1130 0.83 -1.0 383,257 - GFF1130 0.83 -1.3 383,311 + GFF1130 0.87 -0.6 383,311 + GFF1130 0.87 -1.0 383,311 + GFF1130 0.87 -1.3 383,312 - GFF1130 0.87 -1.5 383,420 - +0.2 383,424 + +0.0 383,492 - -1.0 383,516 + +0.3 383,517 - -2.0 383,517 - -0.8 383,517 - -0.3 383,521 - -0.3 383,526 - +0.8 383,526 - +1.0 383,526 - -0.3 383,526 - -1.2 383,545 + -0.2 383,546 - -0.1 383,546 - +0.5 383,770 - GFF1131 0.33 +0.3 383,770 - GFF1131 0.33 -1.2 383,963 + GFF1131 0.58 -0.8 383,963 + GFF1131 0.58 -1.3 383,964 - GFF1131 0.58 -1.7 383,964 - GFF1131 0.58 -1.3 383,964 - GFF1131 0.58 +0.4 383,964 - GFF1131 0.58 +1.0 384,048 - GFF1131 0.69 -1.6 384,048 - GFF1131 0.69 +0.4 384,048 - GFF1131 0.69 -0.3 384,117 + GFF1131 0.78 -0.8 384,196 - GFF1131 0.89 -1.0 384,282 + -0.2 384,283 - -2.6 384,283 - +0.6 384,310 + +0.3 384,470 - GFF1132 0.23 +0.0 384,470 - GFF1132 0.23 +0.3 384,476 + GFF1132 0.24 +0.6 384,521 + GFF1132 0.34 +0.4 384,558 - GFF1132 0.42 -0.3 384,570 + GFF1132 0.44 -0.9 384,570 + GFF1132 0.44 -0.2 384,571 - GFF1132 0.44 -1.3 384,608 + GFF1132 0.52 +0.7 384,623 - GFF1132 0.56 +1.8 384,669 - GFF1132 0.66 -0.3 384,808 - +0.3 384,870 - -1.8 384,872 + -0.4 384,872 + -0.1 384,873 - -0.5 384,873 - +0.1 384,887 + -0.7 384,920 - -1.1 384,930 - +0.2 384,930 - -0.7 384,930 - +0.3 384,943 - -1.3 384,943 - -1.2 384,967 - -0.8 384,967 - -1.0 384,975 + +0.3 384,975 + +0.0 384,975 + -0.6 384,976 - -0.6 384,976 - -1.3 384,976 - -0.4 385,022 - -0.3 385,084 - +0.3 385,136 - GFF1133 0.12 +0.0 385,179 - GFF1133 0.15 -1.0 385,179 - GFF1133 0.15 -1.5 385,179 - GFF1133 0.15 +0.6
Or see this region's nucleotide sequence