Strain Fitness in Methylophilus sp. DMC18 around GFF1113

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1112 and GFF1113 are separated by 195 nucleotidesGFF1113 and GFF1114 are separated by 11 nucleotides GFF1112 - hypothetical protein, at 362,478 to 364,046 GFF1112 GFF1113 - Intermembrane transport lipoprotein PqiC, at 364,242 to 364,847 GFF1113 GFF1114 - Intermembrane transport protein PqiB, at 364,859 to 366,517 GFF1114 Position (kb) 364 365Strain fitness (log2 ratio) -3 -2 -1 0 1at 363.262 kb on + strand, within GFF1112at 363.322 kb on + strand, within GFF1112at 363.357 kb on + strand, within GFF1112at 363.357 kb on + strand, within GFF1112at 363.358 kb on - strand, within GFF1112at 363.377 kb on + strand, within GFF1112at 363.377 kb on + strand, within GFF1112at 363.379 kb on + strand, within GFF1112at 363.379 kb on + strand, within GFF1112at 363.379 kb on + strand, within GFF1112at 363.379 kb on + strand, within GFF1112at 363.379 kb on + strand, within GFF1112at 363.379 kb on + strand, within GFF1112at 363.380 kb on - strand, within GFF1112at 363.380 kb on - strand, within GFF1112at 363.380 kb on - strand, within GFF1112at 363.380 kb on - strand, within GFF1112at 363.380 kb on - strand, within GFF1112at 363.380 kb on - strand, within GFF1112at 363.380 kb on - strand, within GFF1112at 363.380 kb on - strand, within GFF1112at 363.380 kb on - strand, within GFF1112at 363.418 kb on + strand, within GFF1112at 363.418 kb on + strand, within GFF1112at 363.419 kb on - strand, within GFF1112at 363.419 kb on - strand, within GFF1112at 363.491 kb on + strand, within GFF1112at 363.502 kb on + strand, within GFF1112at 363.502 kb on + strand, within GFF1112at 363.502 kb on + strand, within GFF1112at 363.502 kb on + strand, within GFF1112at 363.502 kb on + strand, within GFF1112at 363.503 kb on - strand, within GFF1112at 363.503 kb on - strand, within GFF1112at 363.503 kb on - strand, within GFF1112at 363.503 kb on - strand, within GFF1112at 363.503 kb on - strand, within GFF1112at 363.503 kb on - strand, within GFF1112at 363.503 kb on - strand, within GFF1112at 363.547 kb on + strand, within GFF1112at 363.547 kb on + strand, within GFF1112at 363.547 kb on + strand, within GFF1112at 363.548 kb on - strand, within GFF1112at 363.548 kb on - strand, within GFF1112at 363.548 kb on - strand, within GFF1112at 363.548 kb on - strand, within GFF1112at 363.548 kb on - strand, within GFF1112at 363.548 kb on - strand, within GFF1112at 363.551 kb on - strand, within GFF1112at 363.665 kb on - strand, within GFF1112at 363.687 kb on - strand, within GFF1112at 363.697 kb on + strand, within GFF1112at 363.718 kb on - strand, within GFF1112at 363.718 kb on - strand, within GFF1112at 363.752 kb on + strand, within GFF1112at 363.752 kb on + strand, within GFF1112at 363.752 kb on + strand, within GFF1112at 363.752 kb on + strand, within GFF1112at 363.753 kb on - strand, within GFF1112at 363.753 kb on - strand, within GFF1112at 363.753 kb on - strand, within GFF1112at 363.846 kb on - strand, within GFF1112at 363.859 kb on + strand, within GFF1112at 363.860 kb on - strand, within GFF1112at 363.924 kb on - strandat 363.926 kb on + strandat 363.926 kb on + strandat 363.926 kb on + strandat 363.927 kb on - strandat 363.927 kb on - strandat 363.927 kb on - strandat 364.066 kb on + strandat 364.073 kb on - strandat 364.073 kb on - strandat 364.073 kb on - strandat 364.073 kb on - strandat 364.073 kb on - strandat 364.073 kb on - strandat 364.086 kb on - strandat 364.086 kb on - strandat 364.124 kb on + strandat 364.145 kb on - strandat 364.229 kb on - strandat 364.231 kb on + strandat 364.231 kb on + strandat 364.231 kb on + strandat 364.232 kb on - strandat 364.232 kb on - strandat 364.290 kb on + strandat 364.358 kb on + strand, within GFF1113at 364.359 kb on - strand, within GFF1113at 364.442 kb on + strand, within GFF1113at 364.442 kb on + strand, within GFF1113at 364.442 kb on + strand, within GFF1113at 364.442 kb on + strand, within GFF1113at 364.443 kb on - strand, within GFF1113at 364.443 kb on - strand, within GFF1113at 364.443 kb on - strand, within GFF1113at 364.443 kb on - strand, within GFF1113at 364.443 kb on - strand, within GFF1113at 364.461 kb on + strand, within GFF1113at 364.461 kb on + strand, within GFF1113at 364.462 kb on - strand, within GFF1113at 364.462 kb on - strand, within GFF1113at 364.462 kb on - strand, within GFF1113at 364.462 kb on - strand, within GFF1113at 364.593 kb on + strand, within GFF1113at 364.594 kb on - strand, within GFF1113at 364.619 kb on + strand, within GFF1113at 364.619 kb on + strand, within GFF1113at 364.619 kb on + strand, within GFF1113at 364.620 kb on - strand, within GFF1113at 364.620 kb on - strand, within GFF1113at 364.620 kb on - strand, within GFF1113at 364.620 kb on - strand, within GFF1113at 364.620 kb on - strand, within GFF1113at 364.689 kb on - strand, within GFF1113at 364.689 kb on - strand, within GFF1113at 364.689 kb on - strand, within GFF1113at 364.715 kb on + strand, within GFF1113at 364.715 kb on + strand, within GFF1113at 364.716 kb on - strand, within GFF1113at 364.821 kb on - strandat 364.841 kb on + strandat 364.842 kb on - strandat 364.842 kb on - strandat 364.942 kb on + strandat 364.942 kb on + strandat 365.011 kb on - strandat 365.011 kb on - strandat 365.192 kb on + strand, within GFF1114at 365.193 kb on - strand, within GFF1114at 365.215 kb on + strand, within GFF1114at 365.215 kb on + strand, within GFF1114at 365.215 kb on + strand, within GFF1114at 365.253 kb on - strand, within GFF1114at 365.253 kb on - strand, within GFF1114at 365.316 kb on + strand, within GFF1114at 365.317 kb on - strand, within GFF1114at 365.317 kb on - strand, within GFF1114at 365.512 kb on - strand, within GFF1114at 365.626 kb on + strand, within GFF1114at 365.627 kb on - strand, within GFF1114at 365.627 kb on - strand, within GFF1114at 365.627 kb on - strand, within GFF1114at 365.627 kb on - strand, within GFF1114at 365.646 kb on + strand, within GFF1114at 365.647 kb on - strand, within GFF1114at 365.647 kb on - strand, within GFF1114at 365.655 kb on + strand, within GFF1114at 365.697 kb on + strand, within GFF1114at 365.698 kb on - strand, within GFF1114at 365.698 kb on - strand, within GFF1114

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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363,262 + GFF1112 0.50 -0.6
363,322 + GFF1112 0.54 -0.7
363,357 + GFF1112 0.56 +0.1
363,357 + GFF1112 0.56 -0.9
363,358 - GFF1112 0.56 -0.2
363,377 + GFF1112 0.57 -0.4
363,377 + GFF1112 0.57 +0.0
363,379 + GFF1112 0.57 +0.0
363,379 + GFF1112 0.57 -0.2
363,379 + GFF1112 0.57 +0.2
363,379 + GFF1112 0.57 -0.1
363,379 + GFF1112 0.57 +0.3
363,379 + GFF1112 0.57 -0.1
363,380 - GFF1112 0.57 +0.2
363,380 - GFF1112 0.57 -0.1
363,380 - GFF1112 0.57 -0.2
363,380 - GFF1112 0.57 +0.3
363,380 - GFF1112 0.57 +1.0
363,380 - GFF1112 0.57 +1.0
363,380 - GFF1112 0.57 -0.3
363,380 - GFF1112 0.57 +0.6
363,380 - GFF1112 0.57 -0.4
363,418 + GFF1112 0.60 +0.0
363,418 + GFF1112 0.60 -0.8
363,419 - GFF1112 0.60 -0.6
363,419 - GFF1112 0.60 -1.6
363,491 + GFF1112 0.65 -0.5
363,502 + GFF1112 0.65 -0.4
363,502 + GFF1112 0.65 +0.4
363,502 + GFF1112 0.65 -1.7
363,502 + GFF1112 0.65 -0.3
363,502 + GFF1112 0.65 +0.0
363,503 - GFF1112 0.65 -0.5
363,503 - GFF1112 0.65 +0.1
363,503 - GFF1112 0.65 -0.0
363,503 - GFF1112 0.65 +0.7
363,503 - GFF1112 0.65 +1.2
363,503 - GFF1112 0.65 -0.5
363,503 - GFF1112 0.65 -1.0
363,547 + GFF1112 0.68 -0.6
363,547 + GFF1112 0.68 +0.6
363,547 + GFF1112 0.68 +0.2
363,548 - GFF1112 0.68 -0.6
363,548 - GFF1112 0.68 -0.6
363,548 - GFF1112 0.68 -0.6
363,548 - GFF1112 0.68 -0.4
363,548 - GFF1112 0.68 -0.5
363,548 - GFF1112 0.68 -0.1
363,551 - GFF1112 0.68 -0.1
363,665 - GFF1112 0.76 -1.5
363,687 - GFF1112 0.77 +0.4
363,697 + GFF1112 0.78 +0.6
363,718 - GFF1112 0.79 -0.7
363,718 - GFF1112 0.79 +0.0
363,752 + GFF1112 0.81 +0.4
363,752 + GFF1112 0.81 -0.6
363,752 + GFF1112 0.81 +0.3
363,752 + GFF1112 0.81 -0.3
363,753 - GFF1112 0.81 -1.2
363,753 - GFF1112 0.81 +0.3
363,753 - GFF1112 0.81 -1.0
363,846 - GFF1112 0.87 -1.0
363,859 + GFF1112 0.88 +0.2
363,860 - GFF1112 0.88 +0.4
363,924 - -0.1
363,926 + +1.0
363,926 + -1.2
363,926 + +0.9
363,927 - +0.5
363,927 - -1.4
363,927 - -0.3
364,066 + -1.0
364,073 - -0.8
364,073 - -1.0
364,073 - +1.0
364,073 - -1.3
364,073 - -1.6
364,073 - -0.3
364,086 - +0.3
364,086 - -1.0
364,124 + +0.0
364,145 - -0.8
364,229 - +1.0
364,231 + -0.2
364,231 + +0.7
364,231 + -0.6
364,232 - +0.0
364,232 - -0.4
364,290 + +0.8
364,358 + GFF1113 0.19 -2.3
364,359 - GFF1113 0.19 -0.7
364,442 + GFF1113 0.33 -1.6
364,442 + GFF1113 0.33 -0.3
364,442 + GFF1113 0.33 -1.8
364,442 + GFF1113 0.33 -0.3
364,443 - GFF1113 0.33 -1.0
364,443 - GFF1113 0.33 -0.6
364,443 - GFF1113 0.33 -0.3
364,443 - GFF1113 0.33 -1.3
364,443 - GFF1113 0.33 -1.7
364,461 + GFF1113 0.36 +0.0
364,461 + GFF1113 0.36 -0.7
364,462 - GFF1113 0.36 -0.6
364,462 - GFF1113 0.36 +0.6
364,462 - GFF1113 0.36 -0.1
364,462 - GFF1113 0.36 -1.0
364,593 + GFF1113 0.58 -0.9
364,594 - GFF1113 0.58 -0.7
364,619 + GFF1113 0.62 -0.8
364,619 + GFF1113 0.62 -1.6
364,619 + GFF1113 0.62 -0.3
364,620 - GFF1113 0.62 -0.5
364,620 - GFF1113 0.62 -0.4
364,620 - GFF1113 0.62 -1.3
364,620 - GFF1113 0.62 +0.0
364,620 - GFF1113 0.62 -3.2
364,689 - GFF1113 0.74 +0.2
364,689 - GFF1113 0.74 -1.0
364,689 - GFF1113 0.74 -1.2
364,715 + GFF1113 0.78 -0.2
364,715 + GFF1113 0.78 +0.0
364,716 - GFF1113 0.78 +0.7
364,821 - -0.8
364,841 + -0.6
364,842 - -1.6
364,842 - -0.6
364,942 + +0.5
364,942 + -1.0
365,011 - -0.3
365,011 - +0.0
365,192 + GFF1114 0.20 +0.4
365,193 - GFF1114 0.20 -0.3
365,215 + GFF1114 0.21 +0.2
365,215 + GFF1114 0.21 -0.3
365,215 + GFF1114 0.21 -0.6
365,253 - GFF1114 0.24 -0.6
365,253 - GFF1114 0.24 -0.6
365,316 + GFF1114 0.28 -0.3
365,317 - GFF1114 0.28 -2.0
365,317 - GFF1114 0.28 -0.3
365,512 - GFF1114 0.39 -1.3
365,626 + GFF1114 0.46 -1.0
365,627 - GFF1114 0.46 -1.2
365,627 - GFF1114 0.46 -1.2
365,627 - GFF1114 0.46 +0.6
365,627 - GFF1114 0.46 -0.6
365,646 + GFF1114 0.47 -0.6
365,647 - GFF1114 0.47 -1.0
365,647 - GFF1114 0.47 +0.7
365,655 + GFF1114 0.48 -0.4
365,697 + GFF1114 0.51 -0.6
365,698 - GFF1114 0.51 -1.0
365,698 - GFF1114 0.51 +0.6

Or see this region's nucleotide sequence