Strain Fitness in Methylophilus sp. DMC18 around GFF1086

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1084 and GFF1085 are separated by 30 nucleotidesGFF1085 and GFF1086 are separated by 17 nucleotidesGFF1086 and GFF1087 overlap by 1 nucleotidesGFF1087 and GFF1088 are separated by 79 nucleotides GFF1084 - hypothetical protein, at 331,378 to 331,515 GFF1084 GFF1085 - Cbb3-type cytochrome c oxidase subunit CcoP, at 331,546 to 332,442 GFF1085 GFF1086 - hypothetical protein, at 332,460 to 333,905 GFF1086 GFF1087 - hypothetical protein, at 333,905 to 334,219 GFF1087 GFF1088 - hypothetical protein, at 334,299 to 335,114 GFF1088 Position (kb) 332 333 334Strain fitness (log2 ratio) -3 -2 -1 0 1at 332.440 kb on + strandat 332.440 kb on + strandat 332.441 kb on - strandat 332.543 kb on + strandat 332.550 kb on + strandat 332.550 kb on + strandat 332.622 kb on + strand, within GFF1086at 332.622 kb on + strand, within GFF1086at 332.692 kb on - strand, within GFF1086at 332.730 kb on + strand, within GFF1086at 332.731 kb on - strand, within GFF1086at 332.731 kb on - strand, within GFF1086at 332.829 kb on + strand, within GFF1086at 332.830 kb on - strand, within GFF1086at 332.831 kb on + strand, within GFF1086at 332.841 kb on + strand, within GFF1086at 332.841 kb on + strand, within GFF1086at 332.841 kb on + strand, within GFF1086at 332.841 kb on + strand, within GFF1086at 332.842 kb on - strand, within GFF1086at 332.877 kb on - strand, within GFF1086at 332.885 kb on + strand, within GFF1086at 332.995 kb on - strand, within GFF1086at 333.090 kb on + strand, within GFF1086at 333.105 kb on + strand, within GFF1086at 333.107 kb on + strand, within GFF1086at 333.108 kb on - strand, within GFF1086at 333.108 kb on - strand, within GFF1086at 333.108 kb on - strand, within GFF1086at 333.129 kb on + strand, within GFF1086at 333.129 kb on + strand, within GFF1086at 333.129 kb on + strand, within GFF1086at 333.129 kb on + strand, within GFF1086at 333.130 kb on - strand, within GFF1086at 333.130 kb on - strand, within GFF1086at 333.131 kb on + strand, within GFF1086at 333.131 kb on + strand, within GFF1086at 333.132 kb on - strand, within GFF1086at 333.132 kb on - strand, within GFF1086at 333.141 kb on + strand, within GFF1086at 333.192 kb on + strand, within GFF1086at 333.192 kb on + strand, within GFF1086at 333.282 kb on - strand, within GFF1086at 333.341 kb on + strand, within GFF1086at 333.341 kb on + strand, within GFF1086at 333.341 kb on + strand, within GFF1086at 333.379 kb on + strand, within GFF1086at 333.379 kb on + strand, within GFF1086at 333.379 kb on + strand, within GFF1086at 333.379 kb on + strand, within GFF1086at 333.379 kb on + strand, within GFF1086at 333.418 kb on - strand, within GFF1086at 333.498 kb on + strand, within GFF1086at 333.498 kb on + strand, within GFF1086at 333.500 kb on + strand, within GFF1086at 333.577 kb on + strand, within GFF1086at 333.577 kb on + strand, within GFF1086at 333.605 kb on + strand, within GFF1086at 333.633 kb on + strand, within GFF1086at 333.635 kb on + strand, within GFF1086at 333.676 kb on - strand, within GFF1086at 333.903 kb on + strandat 333.903 kb on + strandat 333.903 kb on + strandat 334.254 kb on + strandat 334.254 kb on + strandat 334.254 kb on + strandat 334.308 kb on + strandat 334.308 kb on + strandat 334.308 kb on + strandat 334.308 kb on + strandat 334.348 kb on + strandat 334.348 kb on + strandat 334.348 kb on + strandat 334.349 kb on - strandat 334.357 kb on - strandat 334.423 kb on + strand, within GFF1088at 334.423 kb on + strand, within GFF1088at 334.423 kb on + strand, within GFF1088at 334.424 kb on - strand, within GFF1088at 334.424 kb on - strand, within GFF1088at 334.424 kb on - strand, within GFF1088at 334.451 kb on + strand, within GFF1088at 334.451 kb on + strand, within GFF1088at 334.451 kb on + strand, within GFF1088at 334.452 kb on - strand, within GFF1088at 334.458 kb on + strand, within GFF1088at 334.474 kb on + strand, within GFF1088at 334.474 kb on + strand, within GFF1088at 334.474 kb on + strand, within GFF1088at 334.474 kb on + strand, within GFF1088at 334.474 kb on + strand, within GFF1088at 334.474 kb on + strand, within GFF1088at 334.475 kb on - strand, within GFF1088at 334.475 kb on - strand, within GFF1088at 334.475 kb on - strand, within GFF1088at 334.475 kb on - strand, within GFF1088at 334.475 kb on - strand, within GFF1088at 334.475 kb on - strand, within GFF1088at 334.475 kb on - strand, within GFF1088at 334.475 kb on - strand, within GFF1088at 334.514 kb on + strand, within GFF1088at 334.514 kb on + strand, within GFF1088at 334.515 kb on - strand, within GFF1088at 334.592 kb on + strand, within GFF1088at 334.593 kb on - strand, within GFF1088at 334.652 kb on + strand, within GFF1088at 334.653 kb on - strand, within GFF1088at 334.653 kb on - strand, within GFF1088at 334.683 kb on + strand, within GFF1088at 334.684 kb on - strand, within GFF1088at 334.689 kb on + strand, within GFF1088at 334.689 kb on + strand, within GFF1088at 334.690 kb on - strand, within GFF1088at 334.733 kb on + strand, within GFF1088at 334.733 kb on + strand, within GFF1088at 334.733 kb on + strand, within GFF1088at 334.857 kb on - strand, within GFF1088at 334.878 kb on + strand, within GFF1088at 334.878 kb on + strand, within GFF1088at 334.878 kb on + strand, within GFF1088at 334.879 kb on - strand, within GFF1088at 334.879 kb on - strand, within GFF1088at 334.896 kb on + strand, within GFF1088at 334.897 kb on - strand, within GFF1088at 334.897 kb on - strand, within GFF1088at 334.897 kb on - strand, within GFF1088

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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332,440 + -0.3
332,440 + -0.9
332,441 - -1.0
332,543 + -1.3
332,550 + -1.3
332,550 + -0.6
332,622 + GFF1086 0.11 -1.0
332,622 + GFF1086 0.11 -1.6
332,692 - GFF1086 0.16 -1.3
332,730 + GFF1086 0.19 +0.6
332,731 - GFF1086 0.19 -1.0
332,731 - GFF1086 0.19 -0.8
332,829 + GFF1086 0.26 -1.0
332,830 - GFF1086 0.26 -1.3
332,831 + GFF1086 0.26 -2.2
332,841 + GFF1086 0.26 -1.8
332,841 + GFF1086 0.26 -2.3
332,841 + GFF1086 0.26 -1.3
332,841 + GFF1086 0.26 -0.8
332,842 - GFF1086 0.26 -2.5
332,877 - GFF1086 0.29 -1.0
332,885 + GFF1086 0.29 -1.8
332,995 - GFF1086 0.37 +0.0
333,090 + GFF1086 0.44 -1.0
333,105 + GFF1086 0.45 -1.3
333,107 + GFF1086 0.45 -2.5
333,108 - GFF1086 0.45 -1.0
333,108 - GFF1086 0.45 -1.0
333,108 - GFF1086 0.45 -0.6
333,129 + GFF1086 0.46 -1.2
333,129 + GFF1086 0.46 -1.9
333,129 + GFF1086 0.46 +0.6
333,129 + GFF1086 0.46 -0.6
333,130 - GFF1086 0.46 -1.0
333,130 - GFF1086 0.46 -0.3
333,131 + GFF1086 0.46 -1.6
333,131 + GFF1086 0.46 -1.3
333,132 - GFF1086 0.46 -1.3
333,132 - GFF1086 0.46 +0.6
333,141 + GFF1086 0.47 -1.9
333,192 + GFF1086 0.51 -1.8
333,192 + GFF1086 0.51 -2.0
333,282 - GFF1086 0.57 -1.3
333,341 + GFF1086 0.61 +0.0
333,341 + GFF1086 0.61 -1.0
333,341 + GFF1086 0.61 -1.3
333,379 + GFF1086 0.64 -0.3
333,379 + GFF1086 0.64 -1.3
333,379 + GFF1086 0.64 -1.0
333,379 + GFF1086 0.64 -1.0
333,379 + GFF1086 0.64 -2.0
333,418 - GFF1086 0.66 +0.0
333,498 + GFF1086 0.72 -3.7
333,498 + GFF1086 0.72 -0.6
333,500 + GFF1086 0.72 -1.6
333,577 + GFF1086 0.77 -1.0
333,577 + GFF1086 0.77 -1.6
333,605 + GFF1086 0.79 -1.3
333,633 + GFF1086 0.81 +0.0
333,635 + GFF1086 0.81 -3.4
333,676 - GFF1086 0.84 -1.0
333,903 + -1.0
333,903 + -0.3
333,903 + -1.6
334,254 + -1.6
334,254 + +0.6
334,254 + -0.4
334,308 + -0.6
334,308 + -0.9
334,308 + +0.7
334,308 + -1.9
334,348 + +0.4
334,348 + -1.5
334,348 + -0.6
334,349 - -0.1
334,357 - -1.3
334,423 + GFF1088 0.15 +0.2
334,423 + GFF1088 0.15 -0.0
334,423 + GFF1088 0.15 -1.6
334,424 - GFF1088 0.15 -0.9
334,424 - GFF1088 0.15 -0.8
334,424 - GFF1088 0.15 +0.2
334,451 + GFF1088 0.19 -0.0
334,451 + GFF1088 0.19 -0.9
334,451 + GFF1088 0.19 -0.7
334,452 - GFF1088 0.19 +0.7
334,458 + GFF1088 0.19 -0.5
334,474 + GFF1088 0.21 -1.3
334,474 + GFF1088 0.21 -0.0
334,474 + GFF1088 0.21 -0.1
334,474 + GFF1088 0.21 -2.2
334,474 + GFF1088 0.21 +0.4
334,474 + GFF1088 0.21 -0.8
334,475 - GFF1088 0.22 -0.0
334,475 - GFF1088 0.22 -1.6
334,475 - GFF1088 0.22 -1.2
334,475 - GFF1088 0.22 -0.1
334,475 - GFF1088 0.22 -0.9
334,475 - GFF1088 0.22 -0.6
334,475 - GFF1088 0.22 -0.6
334,475 - GFF1088 0.22 -0.4
334,514 + GFF1088 0.26 -0.8
334,514 + GFF1088 0.26 -0.0
334,515 - GFF1088 0.26 +1.0
334,592 + GFF1088 0.36 -0.6
334,593 - GFF1088 0.36 -0.9
334,652 + GFF1088 0.43 -1.2
334,653 - GFF1088 0.43 +0.2
334,653 - GFF1088 0.43 -1.3
334,683 + GFF1088 0.47 -0.5
334,684 - GFF1088 0.47 -1.0
334,689 + GFF1088 0.48 -1.1
334,689 + GFF1088 0.48 -1.6
334,690 - GFF1088 0.48 +0.3
334,733 + GFF1088 0.53 -2.3
334,733 + GFF1088 0.53 -1.1
334,733 + GFF1088 0.53 -0.2
334,857 - GFF1088 0.68 +0.5
334,878 + GFF1088 0.71 -0.1
334,878 + GFF1088 0.71 -0.4
334,878 + GFF1088 0.71 -1.6
334,879 - GFF1088 0.71 +0.6
334,879 - GFF1088 0.71 -1.0
334,896 + GFF1088 0.73 -0.8
334,897 - GFF1088 0.73 +0.5
334,897 - GFF1088 0.73 -0.6
334,897 - GFF1088 0.73 +0.5

Or see this region's nucleotide sequence