Strain Fitness in Methylophilus sp. DMC18 around GFF1060

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1059 and GFF1060 are separated by 127 nucleotidesGFF1060 and GFF1061 are separated by 11 nucleotides GFF1059 - Beta-barrel assembly-enhancing protease, at 297,609 to 299,471 GFF1059 GFF1060 - Peroxiredoxin, at 299,599 to 300,138 GFF1060 GFF1061 - IS1595 family transposase ISSsu9, at 300,150 to 300,632 GFF1061 Position (kb) 299 300 301Strain fitness (log2 ratio) -2 -1 0 1at 298.617 kb on - strand, within GFF1059at 298.617 kb on - strand, within GFF1059at 298.639 kb on + strand, within GFF1059at 298.667 kb on - strand, within GFF1059at 298.703 kb on - strand, within GFF1059at 298.754 kb on - strand, within GFF1059at 298.754 kb on - strand, within GFF1059at 298.754 kb on - strand, within GFF1059at 298.754 kb on - strand, within GFF1059at 298.770 kb on + strand, within GFF1059at 298.792 kb on + strand, within GFF1059at 298.793 kb on - strand, within GFF1059at 298.793 kb on - strand, within GFF1059at 298.797 kb on + strand, within GFF1059at 298.797 kb on + strand, within GFF1059at 298.798 kb on - strand, within GFF1059at 298.798 kb on - strand, within GFF1059at 298.824 kb on - strand, within GFF1059at 298.824 kb on - strand, within GFF1059at 298.895 kb on - strand, within GFF1059at 298.918 kb on - strand, within GFF1059at 298.941 kb on + strand, within GFF1059at 298.941 kb on + strand, within GFF1059at 298.941 kb on + strand, within GFF1059at 298.942 kb on - strand, within GFF1059at 298.942 kb on - strand, within GFF1059at 298.942 kb on - strand, within GFF1059at 298.977 kb on + strand, within GFF1059at 298.978 kb on - strand, within GFF1059at 298.978 kb on - strand, within GFF1059at 299.037 kb on + strand, within GFF1059at 299.087 kb on + strand, within GFF1059at 299.088 kb on - strand, within GFF1059at 299.088 kb on - strand, within GFF1059at 299.136 kb on - strand, within GFF1059at 299.166 kb on - strand, within GFF1059at 299.197 kb on + strand, within GFF1059at 299.201 kb on - strand, within GFF1059at 299.243 kb on - strand, within GFF1059at 299.243 kb on - strand, within GFF1059at 299.243 kb on - strand, within GFF1059at 299.279 kb on + strand, within GFF1059at 299.347 kb on + strandat 299.347 kb on + strandat 299.348 kb on - strandat 299.385 kb on + strandat 299.386 kb on - strandat 299.476 kb on + strandat 299.511 kb on + strandat 299.511 kb on + strandat 299.512 kb on - strandat 299.512 kb on - strandat 299.531 kb on + strandat 299.531 kb on + strandat 299.531 kb on + strandat 299.532 kb on - strandat 299.532 kb on - strandat 299.536 kb on + strandat 299.536 kb on + strandat 299.541 kb on + strandat 299.541 kb on + strandat 299.541 kb on + strandat 299.577 kb on + strandat 299.620 kb on + strandat 299.653 kb on + strand, within GFF1060at 299.779 kb on + strand, within GFF1060at 299.779 kb on + strand, within GFF1060at 299.811 kb on + strand, within GFF1060at 299.811 kb on + strand, within GFF1060at 299.812 kb on - strand, within GFF1060at 299.876 kb on + strand, within GFF1060at 299.876 kb on + strand, within GFF1060at 299.876 kb on + strand, within GFF1060at 299.876 kb on + strand, within GFF1060at 299.877 kb on - strand, within GFF1060at 299.880 kb on + strand, within GFF1060at 299.880 kb on + strand, within GFF1060at 299.880 kb on + strand, within GFF1060at 299.880 kb on + strand, within GFF1060at 300.034 kb on - strand, within GFF1060at 300.093 kb on + strandat 300.093 kb on + strandat 300.136 kb on + strandat 300.633 kb on + strandat 300.633 kb on + strandat 300.667 kb on + strandat 300.667 kb on + strandat 300.668 kb on - strandat 300.673 kb on + strandat 300.674 kb on - strandat 300.689 kb on + strandat 300.691 kb on + strandat 300.692 kb on - strandat 300.754 kb on + strandat 300.755 kb on - strandat 300.757 kb on + strandat 300.757 kb on + strandat 300.757 kb on + strandat 300.760 kb on + strandat 300.760 kb on + strandat 300.760 kb on + strandat 300.760 kb on + strandat 300.760 kb on + strandat 300.760 kb on + strandat 300.760 kb on + strandat 300.760 kb on + strandat 300.760 kb on + strandat 300.761 kb on - strandat 300.761 kb on - strandat 300.761 kb on - strandat 300.810 kb on + strandat 300.814 kb on + strandat 300.814 kb on + strandat 300.814 kb on + strandat 300.814 kb on + strandat 300.814 kb on + strandat 300.815 kb on - strandat 300.818 kb on + strandat 300.984 kb on + strandat 300.984 kb on + strandat 301.008 kb on - strandat 301.023 kb on - strandat 301.040 kb on + strandat 301.078 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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298,617 - GFF1059 0.54 -1.2
298,617 - GFF1059 0.54 -1.8
298,639 + GFF1059 0.55 +0.1
298,667 - GFF1059 0.57 +0.3
298,703 - GFF1059 0.59 -1.0
298,754 - GFF1059 0.61 -0.2
298,754 - GFF1059 0.61 -1.8
298,754 - GFF1059 0.61 +0.3
298,754 - GFF1059 0.61 -1.0
298,770 + GFF1059 0.62 -0.1
298,792 + GFF1059 0.63 -0.0
298,793 - GFF1059 0.64 -0.0
298,793 - GFF1059 0.64 -2.7
298,797 + GFF1059 0.64 -0.0
298,797 + GFF1059 0.64 -0.1
298,798 - GFF1059 0.64 +0.8
298,798 - GFF1059 0.64 -1.3
298,824 - GFF1059 0.65 +0.6
298,824 - GFF1059 0.65 -2.5
298,895 - GFF1059 0.69 -1.0
298,918 - GFF1059 0.70 -0.4
298,941 + GFF1059 0.71 +0.7
298,941 + GFF1059 0.71 +0.4
298,941 + GFF1059 0.71 +0.3
298,942 - GFF1059 0.72 -0.8
298,942 - GFF1059 0.72 -1.3
298,942 - GFF1059 0.72 -1.0
298,977 + GFF1059 0.73 +0.6
298,978 - GFF1059 0.73 +0.6
298,978 - GFF1059 0.73 -0.4
299,037 + GFF1059 0.77 -0.0
299,087 + GFF1059 0.79 -1.0
299,088 - GFF1059 0.79 -0.6
299,088 - GFF1059 0.79 -0.7
299,136 - GFF1059 0.82 +0.7
299,166 - GFF1059 0.84 -0.3
299,197 + GFF1059 0.85 -1.0
299,201 - GFF1059 0.85 +0.3
299,243 - GFF1059 0.88 -0.2
299,243 - GFF1059 0.88 -0.0
299,243 - GFF1059 0.88 -0.6
299,279 + GFF1059 0.90 -0.1
299,347 + -0.3
299,347 + -1.6
299,348 - -0.3
299,385 + -0.1
299,386 - +0.8
299,476 + +1.3
299,511 + -0.8
299,511 + -0.5
299,512 - +1.3
299,512 - -0.6
299,531 + -1.3
299,531 + -1.1
299,531 + -0.4
299,532 - -0.3
299,532 - -0.4
299,536 + -0.7
299,536 + -1.6
299,541 + +0.3
299,541 + -2.2
299,541 + -0.2
299,577 + -0.1
299,620 + -0.3
299,653 + GFF1060 0.10 -1.3
299,779 + GFF1060 0.33 -0.4
299,779 + GFF1060 0.33 -1.1
299,811 + GFF1060 0.39 -1.0
299,811 + GFF1060 0.39 -1.0
299,812 - GFF1060 0.39 -1.0
299,876 + GFF1060 0.51 -0.3
299,876 + GFF1060 0.51 -1.9
299,876 + GFF1060 0.51 -1.0
299,876 + GFF1060 0.51 -1.3
299,877 - GFF1060 0.51 +0.7
299,880 + GFF1060 0.52 -1.8
299,880 + GFF1060 0.52 -1.0
299,880 + GFF1060 0.52 -0.5
299,880 + GFF1060 0.52 -1.0
300,034 - GFF1060 0.81 -0.0
300,093 + +0.6
300,093 + -1.6
300,136 + -1.2
300,633 + +0.3
300,633 + -0.0
300,667 + +1.1
300,667 + -0.0
300,668 - +0.1
300,673 + -0.6
300,674 - -1.0
300,689 + -0.3
300,691 + -0.2
300,692 - +0.3
300,754 + -1.4
300,755 - -0.1
300,757 + -1.0
300,757 + -0.3
300,757 + +1.3
300,760 + -1.8
300,760 + -0.5
300,760 + -0.8
300,760 + +0.6
300,760 + +1.3
300,760 + +0.6
300,760 + -0.6
300,760 + -1.6
300,760 + +0.3
300,761 - -0.0
300,761 - -0.4
300,761 - -1.5
300,810 + -0.6
300,814 + -0.3
300,814 + -1.5
300,814 + -0.0
300,814 + -0.0
300,814 + +1.0
300,815 - -0.4
300,818 + -1.2
300,984 + +0.5
300,984 + -1.3
301,008 - +0.3
301,023 - -0.0
301,040 + -1.8
301,078 - -2.7

Or see this region's nucleotide sequence