Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1053 and GFF1054 are separated by 183 nucleotides GFF1054 and GFF1055 are separated by 89 nucleotides GFF1055 and GFF1056 are separated by 5 nucleotides GFF1056 and GFF1057 are separated by 27 nucleotides
GFF1053 - Peptide deformylase, at 291,756 to 292,289
GFF1053
GFF1054 - hypothetical protein, at 292,473 to 292,748
GFF1054
GFF1055 - hypothetical protein, at 292,838 to 293,125
GFF1055
GFF1056 - Bifunctional uridylyltransferase/uridylyl-removing enzyme, at 293,131 to 295,707
GFF1056
GFF1057 - Methionine aminopeptidase, at 295,735 to 296,529
GFF1057
Position (kb) 293
294
295
296 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 292.195 kb on + strand, within GFF1053 at 292.195 kb on + strand, within GFF1053 at 292.195 kb on + strand, within GFF1053 at 292.196 kb on - strand, within GFF1053 at 292.247 kb on + strand at 292.247 kb on + strand at 292.248 kb on - strand at 292.256 kb on - strand at 292.256 kb on - strand at 292.271 kb on - strand at 292.436 kb on + strand at 292.436 kb on + strand at 292.456 kb on + strand at 292.456 kb on + strand at 292.456 kb on + strand at 292.456 kb on + strand at 292.456 kb on + strand at 292.456 kb on + strand at 292.456 kb on + strand at 292.456 kb on + strand at 292.457 kb on - strand at 292.457 kb on - strand at 292.457 kb on - strand at 292.602 kb on + strand, within GFF1054 at 292.602 kb on + strand, within GFF1054 at 292.602 kb on + strand, within GFF1054 at 292.652 kb on + strand, within GFF1054 at 292.671 kb on + strand, within GFF1054 at 292.671 kb on + strand, within GFF1054 at 292.671 kb on + strand, within GFF1054 at 292.671 kb on + strand, within GFF1054 at 292.671 kb on + strand, within GFF1054 at 292.671 kb on + strand, within GFF1054 at 292.671 kb on + strand, within GFF1054 at 292.675 kb on + strand, within GFF1054 at 292.675 kb on + strand, within GFF1054 at 292.675 kb on + strand, within GFF1054 at 292.675 kb on + strand, within GFF1054 at 292.675 kb on + strand, within GFF1054 at 292.675 kb on + strand, within GFF1054 at 292.734 kb on + strand at 292.746 kb on + strand at 292.761 kb on + strand at 292.761 kb on + strand at 292.761 kb on + strand at 292.761 kb on + strand at 292.761 kb on + strand at 292.761 kb on + strand at 292.761 kb on + strand at 292.762 kb on - strand at 292.818 kb on + strand at 292.833 kb on + strand at 292.834 kb on - strand at 292.908 kb on + strand, within GFF1055 at 292.942 kb on + strand, within GFF1055 at 292.942 kb on + strand, within GFF1055 at 292.942 kb on + strand, within GFF1055 at 292.943 kb on - strand, within GFF1055 at 292.943 kb on - strand, within GFF1055 at 292.958 kb on + strand, within GFF1055 at 292.958 kb on + strand, within GFF1055 at 292.960 kb on + strand, within GFF1055 at 292.960 kb on + strand, within GFF1055 at 292.960 kb on + strand, within GFF1055 at 292.960 kb on + strand, within GFF1055 at 292.960 kb on + strand, within GFF1055 at 292.960 kb on + strand, within GFF1055 at 292.960 kb on + strand, within GFF1055 at 292.961 kb on - strand, within GFF1055 at 292.961 kb on - strand, within GFF1055 at 292.961 kb on - strand, within GFF1055 at 292.961 kb on - strand, within GFF1055 at 292.979 kb on + strand, within GFF1055 at 292.979 kb on + strand, within GFF1055 at 292.979 kb on + strand, within GFF1055 at 292.979 kb on + strand, within GFF1055 at 292.979 kb on + strand, within GFF1055 at 292.979 kb on + strand, within GFF1055 at 292.979 kb on + strand, within GFF1055 at 292.980 kb on - strand, within GFF1055 at 292.980 kb on - strand, within GFF1055 at 292.980 kb on - strand, within GFF1055 at 292.980 kb on - strand, within GFF1055 at 292.980 kb on - strand, within GFF1055 at 292.980 kb on - strand, within GFF1055 at 292.980 kb on - strand, within GFF1055 at 292.981 kb on + strand, within GFF1055 at 292.981 kb on + strand, within GFF1055 at 292.981 kb on + strand, within GFF1055 at 292.981 kb on + strand, within GFF1055 at 292.981 kb on + strand, within GFF1055 at 292.981 kb on + strand, within GFF1055 at 292.982 kb on - strand, within GFF1055 at 292.982 kb on - strand, within GFF1055 at 292.982 kb on - strand, within GFF1055 at 293.011 kb on + strand, within GFF1055 at 293.011 kb on + strand, within GFF1055 at 293.011 kb on + strand, within GFF1055 at 293.012 kb on - strand, within GFF1055 at 293.012 kb on - strand, within GFF1055 at 293.049 kb on + strand, within GFF1055 at 293.049 kb on + strand, within GFF1055 at 293.050 kb on - strand, within GFF1055 at 293.050 kb on - strand, within GFF1055 at 293.050 kb on - strand, within GFF1055 at 293.050 kb on - strand, within GFF1055 at 293.111 kb on + strand at 293.134 kb on + strand at 293.134 kb on + strand at 293.135 kb on - strand at 293.135 kb on - strand at 293.135 kb on - strand at 293.190 kb on + strand at 293.193 kb on + strand at 293.214 kb on + strand at 293.238 kb on + strand at 293.239 kb on - strand at 293.239 kb on - strand at 293.253 kb on + strand at 293.253 kb on + strand at 293.253 kb on + strand at 293.253 kb on + strand at 293.254 kb on - strand at 293.254 kb on - strand at 293.257 kb on + strand at 293.257 kb on + strand at 293.257 kb on + strand at 293.257 kb on + strand at 293.258 kb on - strand at 293.258 kb on - strand at 293.258 kb on - strand at 293.302 kb on + strand at 293.329 kb on - strand at 293.379 kb on + strand at 293.398 kb on - strand, within GFF1056 at 293.406 kb on + strand, within GFF1056 at 293.407 kb on - strand, within GFF1056 at 293.475 kb on + strand, within GFF1056 at 293.493 kb on + strand, within GFF1056 at 293.503 kb on + strand, within GFF1056 at 293.512 kb on - strand, within GFF1056 at 293.513 kb on + strand, within GFF1056 at 293.513 kb on + strand, within GFF1056 at 293.547 kb on + strand, within GFF1056 at 293.548 kb on - strand, within GFF1056 at 293.548 kb on - strand, within GFF1056 at 293.565 kb on - strand, within GFF1056 at 293.565 kb on - strand, within GFF1056 at 293.583 kb on - strand, within GFF1056 at 293.606 kb on + strand, within GFF1056 at 293.606 kb on + strand, within GFF1056 at 293.606 kb on + strand, within GFF1056 at 293.606 kb on + strand, within GFF1056 at 293.607 kb on - strand, within GFF1056 at 293.607 kb on - strand, within GFF1056 at 293.634 kb on + strand, within GFF1056 at 293.666 kb on + strand, within GFF1056 at 293.667 kb on - strand, within GFF1056 at 293.749 kb on + strand, within GFF1056 at 293.750 kb on - strand, within GFF1056 at 293.750 kb on - strand, within GFF1056 at 293.856 kb on + strand, within GFF1056 at 293.884 kb on + strand, within GFF1056 at 293.884 kb on + strand, within GFF1056 at 294.019 kb on + strand, within GFF1056 at 294.023 kb on + strand, within GFF1056 at 294.023 kb on + strand, within GFF1056 at 294.024 kb on - strand, within GFF1056 at 294.024 kb on - strand, within GFF1056 at 294.024 kb on - strand, within GFF1056 at 294.124 kb on + strand, within GFF1056 at 294.125 kb on - strand, within GFF1056 at 294.125 kb on - strand, within GFF1056 at 294.125 kb on - strand, within GFF1056 at 294.125 kb on - strand, within GFF1056 at 294.125 kb on - strand, within GFF1056 at 294.125 kb on - strand, within GFF1056 at 294.125 kb on - strand, within GFF1056 at 294.125 kb on - strand, within GFF1056 at 294.151 kb on + strand, within GFF1056 at 294.152 kb on - strand, within GFF1056 at 294.173 kb on - strand, within GFF1056 at 294.273 kb on - strand, within GFF1056 at 294.301 kb on - strand, within GFF1056 at 294.301 kb on - strand, within GFF1056 at 294.301 kb on - strand, within GFF1056 at 294.305 kb on - strand, within GFF1056 at 294.305 kb on - strand, within GFF1056 at 294.305 kb on - strand, within GFF1056 at 294.398 kb on + strand, within GFF1056 at 294.399 kb on - strand, within GFF1056 at 294.399 kb on - strand, within GFF1056 at 294.399 kb on - strand, within GFF1056 at 294.455 kb on + strand, within GFF1056 at 294.456 kb on - strand, within GFF1056 at 294.456 kb on - strand, within GFF1056 at 294.605 kb on - strand, within GFF1056 at 294.712 kb on + strand, within GFF1056 at 294.713 kb on - strand, within GFF1056 at 294.713 kb on - strand, within GFF1056 at 294.713 kb on - strand, within GFF1056 at 294.733 kb on - strand, within GFF1056 at 294.854 kb on - strand, within GFF1056 at 294.854 kb on - strand, within GFF1056 at 294.854 kb on - strand, within GFF1056 at 294.890 kb on + strand, within GFF1056 at 295.030 kb on + strand, within GFF1056 at 295.031 kb on - strand, within GFF1056 at 295.101 kb on + strand, within GFF1056 at 295.102 kb on - strand, within GFF1056 at 295.147 kb on + strand, within GFF1056 at 295.147 kb on + strand, within GFF1056 at 295.147 kb on + strand, within GFF1056 at 295.148 kb on - strand, within GFF1056 at 295.148 kb on - strand, within GFF1056 at 295.148 kb on - strand, within GFF1056 at 295.148 kb on - strand, within GFF1056 at 295.243 kb on + strand, within GFF1056 at 295.244 kb on - strand, within GFF1056 at 295.366 kb on - strand, within GFF1056 at 295.427 kb on - strand, within GFF1056 at 295.489 kb on - strand at 295.545 kb on - strand at 295.545 kb on - strand at 295.545 kb on - strand at 295.545 kb on - strand at 295.587 kb on + strand at 295.587 kb on + strand at 295.587 kb on + strand at 295.598 kb on - strand at 295.629 kb on - strand at 295.759 kb on - strand at 296.586 kb on - strand at 296.590 kb on - strand at 296.603 kb on - strand at 296.607 kb on + strand at 296.607 kb on + strand at 296.607 kb on + strand at 296.607 kb on + strand at 296.607 kb on + strand at 296.608 kb on - strand at 296.608 kb on - strand at 296.608 kb on - strand at 296.615 kb on + strand at 296.615 kb on + strand at 296.615 kb on + strand at 296.615 kb on + strand at 296.615 kb on + strand at 296.616 kb on - strand at 296.616 kb on - strand at 296.616 kb on - strand at 296.636 kb on + strand at 296.636 kb on + strand at 296.672 kb on - strand at 296.672 kb on - strand at 296.672 kb on - strand at 296.684 kb on + strand at 296.704 kb on + strand at 296.704 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 292,195 + GFF1053 0.82 -0.4 292,195 + GFF1053 0.82 -1.3 292,195 + GFF1053 0.82 -0.2 292,196 - GFF1053 0.82 -1.0 292,247 + -0.8 292,247 + +1.0 292,248 - +0.2 292,256 - -0.6 292,256 - +0.7 292,271 - -0.4 292,436 + +0.1 292,436 + -0.7 292,456 + +0.6 292,456 + -0.3 292,456 + +1.0 292,456 + -0.3 292,456 + +0.1 292,456 + +0.1 292,456 + -1.6 292,456 + -1.1 292,457 - +0.1 292,457 - -1.0 292,457 - +0.7 292,602 + GFF1054 0.47 -1.3 292,602 + GFF1054 0.47 -1.2 292,602 + GFF1054 0.47 +0.6 292,652 + GFF1054 0.65 -0.4 292,671 + GFF1054 0.72 -0.3 292,671 + GFF1054 0.72 -0.7 292,671 + GFF1054 0.72 -1.1 292,671 + GFF1054 0.72 -0.9 292,671 + GFF1054 0.72 -0.5 292,671 + GFF1054 0.72 -0.0 292,671 + GFF1054 0.72 -1.3 292,675 + GFF1054 0.73 -0.6 292,675 + GFF1054 0.73 +0.5 292,675 + GFF1054 0.73 -1.1 292,675 + GFF1054 0.73 -1.0 292,675 + GFF1054 0.73 +0.3 292,675 + GFF1054 0.73 -0.4 292,734 + -0.3 292,746 + -0.3 292,761 + +0.3 292,761 + +0.7 292,761 + -0.2 292,761 + -0.8 292,761 + +0.2 292,761 + +0.3 292,761 + +0.9 292,762 - -0.3 292,818 + -0.7 292,833 + -0.8 292,834 - -0.3 292,908 + GFF1055 0.24 +1.0 292,942 + GFF1055 0.36 -1.7 292,942 + GFF1055 0.36 +0.6 292,942 + GFF1055 0.36 -1.5 292,943 - GFF1055 0.36 -2.0 292,943 - GFF1055 0.36 -0.6 292,958 + GFF1055 0.42 +1.1 292,958 + GFF1055 0.42 -1.5 292,960 + GFF1055 0.42 +1.1 292,960 + GFF1055 0.42 +0.6 292,960 + GFF1055 0.42 +0.4 292,960 + GFF1055 0.42 -0.9 292,960 + GFF1055 0.42 +0.3 292,960 + GFF1055 0.42 -1.4 292,960 + GFF1055 0.42 -0.2 292,961 - GFF1055 0.43 +0.2 292,961 - GFF1055 0.43 +0.8 292,961 - GFF1055 0.43 +1.0 292,961 - GFF1055 0.43 +1.2 292,979 + GFF1055 0.49 -1.0 292,979 + GFF1055 0.49 -0.5 292,979 + GFF1055 0.49 +0.1 292,979 + GFF1055 0.49 -1.3 292,979 + GFF1055 0.49 -0.5 292,979 + GFF1055 0.49 -0.6 292,979 + GFF1055 0.49 -0.8 292,980 - GFF1055 0.49 -1.8 292,980 - GFF1055 0.49 -1.3 292,980 - GFF1055 0.49 -0.8 292,980 - GFF1055 0.49 -0.0 292,980 - GFF1055 0.49 -1.2 292,980 - GFF1055 0.49 -1.8 292,980 - GFF1055 0.49 -1.2 292,981 + GFF1055 0.50 -0.6 292,981 + GFF1055 0.50 -0.2 292,981 + GFF1055 0.50 -0.0 292,981 + GFF1055 0.50 +0.6 292,981 + GFF1055 0.50 -1.0 292,981 + GFF1055 0.50 -0.9 292,982 - GFF1055 0.50 -0.2 292,982 - GFF1055 0.50 -0.9 292,982 - GFF1055 0.50 -1.0 293,011 + GFF1055 0.60 -0.5 293,011 + GFF1055 0.60 -0.6 293,011 + GFF1055 0.60 +0.2 293,012 - GFF1055 0.60 -1.0 293,012 - GFF1055 0.60 +1.3 293,049 + GFF1055 0.73 -0.8 293,049 + GFF1055 0.73 +0.5 293,050 - GFF1055 0.74 -0.3 293,050 - GFF1055 0.74 -0.5 293,050 - GFF1055 0.74 +0.7 293,050 - GFF1055 0.74 -0.3 293,111 + -0.3 293,134 + -0.5 293,134 + +0.3 293,135 - +1.0 293,135 - -1.0 293,135 - -0.8 293,190 + -2.6 293,193 + -0.6 293,214 + -1.8 293,238 + -1.8 293,239 - -0.8 293,239 - -1.0 293,253 + -1.0 293,253 + -0.0 293,253 + -0.8 293,253 + -1.3 293,254 - -1.0 293,254 - -1.2 293,257 + -1.3 293,257 + -1.3 293,257 + -0.3 293,257 + -1.0 293,258 - -0.3 293,258 - -0.6 293,258 - -2.8 293,302 + -1.0 293,329 - -1.8 293,379 + -0.8 293,398 - GFF1056 0.10 -0.0 293,406 + GFF1056 0.11 -0.0 293,407 - GFF1056 0.11 -1.3 293,475 + GFF1056 0.13 -1.0 293,493 + GFF1056 0.14 -1.0 293,503 + GFF1056 0.14 -1.0 293,512 - GFF1056 0.15 -1.3 293,513 + GFF1056 0.15 -0.6 293,513 + GFF1056 0.15 -0.0 293,547 + GFF1056 0.16 -1.6 293,548 - GFF1056 0.16 -1.6 293,548 - GFF1056 0.16 -1.3 293,565 - GFF1056 0.17 -2.2 293,565 - GFF1056 0.17 -0.8 293,583 - GFF1056 0.18 -0.3 293,606 + GFF1056 0.18 -1.0 293,606 + GFF1056 0.18 -1.3 293,606 + GFF1056 0.18 -1.3 293,606 + GFF1056 0.18 -1.0 293,607 - GFF1056 0.18 -1.8 293,607 - GFF1056 0.18 -2.3 293,634 + GFF1056 0.20 -1.8 293,666 + GFF1056 0.21 -2.2 293,667 - GFF1056 0.21 -1.0 293,749 + GFF1056 0.24 -1.6 293,750 - GFF1056 0.24 +0.6 293,750 - GFF1056 0.24 -0.0 293,856 + GFF1056 0.28 -0.6 293,884 + GFF1056 0.29 -1.6 293,884 + GFF1056 0.29 -1.0 294,019 + GFF1056 0.34 -2.0 294,023 + GFF1056 0.35 +0.2 294,023 + GFF1056 0.35 -1.1 294,024 - GFF1056 0.35 -1.6 294,024 - GFF1056 0.35 -0.0 294,024 - GFF1056 0.35 -1.1 294,124 + GFF1056 0.39 -1.0 294,125 - GFF1056 0.39 -2.1 294,125 - GFF1056 0.39 +0.6 294,125 - GFF1056 0.39 +0.2 294,125 - GFF1056 0.39 -1.8 294,125 - GFF1056 0.39 -0.8 294,125 - GFF1056 0.39 -1.6 294,125 - GFF1056 0.39 +0.1 294,125 - GFF1056 0.39 -0.0 294,151 + GFF1056 0.40 -1.0 294,152 - GFF1056 0.40 -0.5 294,173 - GFF1056 0.40 -0.9 294,273 - GFF1056 0.44 -0.6 294,301 - GFF1056 0.45 -2.3 294,301 - GFF1056 0.45 -1.6 294,301 - GFF1056 0.45 -1.8 294,305 - GFF1056 0.46 -1.6 294,305 - GFF1056 0.46 -0.0 294,305 - GFF1056 0.46 -2.8 294,398 + GFF1056 0.49 -1.6 294,399 - GFF1056 0.49 -1.0 294,399 - GFF1056 0.49 -1.6 294,399 - GFF1056 0.49 -1.0 294,455 + GFF1056 0.51 -2.0 294,456 - GFF1056 0.51 -1.0 294,456 - GFF1056 0.51 -1.0 294,605 - GFF1056 0.57 -1.0 294,712 + GFF1056 0.61 -2.0 294,713 - GFF1056 0.61 +0.2 294,713 - GFF1056 0.61 -0.4 294,713 - GFF1056 0.61 -0.3 294,733 - GFF1056 0.62 -0.7 294,854 - GFF1056 0.67 -2.3 294,854 - GFF1056 0.67 +0.2 294,854 - GFF1056 0.67 -1.0 294,890 + GFF1056 0.68 -1.3 295,030 + GFF1056 0.74 -1.0 295,031 - GFF1056 0.74 -0.0 295,101 + GFF1056 0.76 -1.0 295,102 - GFF1056 0.76 -1.0 295,147 + GFF1056 0.78 -1.3 295,147 + GFF1056 0.78 -1.6 295,147 + GFF1056 0.78 -0.3 295,148 - GFF1056 0.78 -1.6 295,148 - GFF1056 0.78 -1.0 295,148 - GFF1056 0.78 -1.0 295,148 - GFF1056 0.78 -0.6 295,243 + GFF1056 0.82 -1.0 295,244 - GFF1056 0.82 -1.6 295,366 - GFF1056 0.87 -0.8 295,427 - GFF1056 0.89 -1.8 295,489 - -2.3 295,545 - -0.6 295,545 - +0.2 295,545 - -1.6 295,545 - -1.6 295,587 + -1.3 295,587 + -1.6 295,587 + -1.3 295,598 - -1.2 295,629 - -1.3 295,759 - -0.6 296,586 - -0.6 296,590 - +1.0 296,603 - -1.0 296,607 + -0.6 296,607 + +0.5 296,607 + -1.0 296,607 + -1.0 296,607 + +0.4 296,608 - -0.6 296,608 - -1.0 296,608 - -0.4 296,615 + -0.6 296,615 + -0.0 296,615 + -0.1 296,615 + -1.8 296,615 + -0.9 296,616 - -2.3 296,616 - -0.2 296,616 - -0.3 296,636 + +0.3 296,636 + +0.6 296,672 - -1.4 296,672 - -1.1 296,672 - -0.8 296,684 + -1.0 296,704 + -0.4 296,704 + +0.7
Or see this region's nucleotide sequence