Strain Fitness in Methylophilus sp. DMC18 around GFF1035

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1033 and GFF1034 overlap by 4 nucleotidesGFF1034 and GFF1035 are separated by 1 nucleotidesGFF1035 and GFF1036 are separated by 0 nucleotides GFF1033 - hypothetical protein, at 275,329 to 276,681 GFF1033 GFF1034 - Molybdopterin synthase sulfur carrier subunit, at 276,678 to 276,935 GFF1034 GFF1035 - hypothetical protein, at 276,937 to 277,410 GFF1035 GFF1036 - Lon protease, at 277,411 to 279,576 GFF1036 Position (kb) 276 277 278Strain fitness (log2 ratio) -3 -2 -1 0 1at 275.950 kb on - strand, within GFF1033at 276.036 kb on + strand, within GFF1033at 276.036 kb on + strand, within GFF1033at 276.036 kb on + strand, within GFF1033at 276.036 kb on + strand, within GFF1033at 276.036 kb on + strand, within GFF1033at 276.036 kb on + strand, within GFF1033at 276.036 kb on + strand, within GFF1033at 276.037 kb on - strand, within GFF1033at 276.037 kb on - strand, within GFF1033at 276.037 kb on - strand, within GFF1033at 276.071 kb on + strand, within GFF1033at 276.071 kb on + strand, within GFF1033at 276.111 kb on + strand, within GFF1033at 276.112 kb on - strand, within GFF1033at 276.143 kb on + strand, within GFF1033at 276.143 kb on + strand, within GFF1033at 276.143 kb on + strand, within GFF1033at 276.143 kb on + strand, within GFF1033at 276.147 kb on + strand, within GFF1033at 276.147 kb on + strand, within GFF1033at 276.147 kb on + strand, within GFF1033at 276.147 kb on + strand, within GFF1033at 276.148 kb on - strand, within GFF1033at 276.148 kb on - strand, within GFF1033at 276.222 kb on + strand, within GFF1033at 276.222 kb on + strand, within GFF1033at 276.223 kb on - strand, within GFF1033at 276.223 kb on - strand, within GFF1033at 276.235 kb on + strand, within GFF1033at 276.235 kb on + strand, within GFF1033at 276.235 kb on + strand, within GFF1033at 276.235 kb on + strand, within GFF1033at 276.235 kb on + strand, within GFF1033at 276.235 kb on + strand, within GFF1033at 276.235 kb on + strand, within GFF1033at 276.236 kb on - strand, within GFF1033at 276.236 kb on - strand, within GFF1033at 276.236 kb on - strand, within GFF1033at 276.236 kb on - strand, within GFF1033at 276.236 kb on - strand, within GFF1033at 276.313 kb on + strand, within GFF1033at 276.313 kb on + strand, within GFF1033at 276.313 kb on + strand, within GFF1033at 276.313 kb on + strand, within GFF1033at 276.313 kb on + strand, within GFF1033at 276.313 kb on + strand, within GFF1033at 276.314 kb on - strand, within GFF1033at 276.314 kb on - strand, within GFF1033at 276.441 kb on + strand, within GFF1033at 276.442 kb on - strand, within GFF1033at 276.442 kb on - strand, within GFF1033at 276.442 kb on - strand, within GFF1033at 276.468 kb on - strand, within GFF1033at 276.471 kb on + strand, within GFF1033at 276.516 kb on + strand, within GFF1033at 276.517 kb on - strand, within GFF1033at 276.519 kb on + strand, within GFF1033at 276.555 kb on + strandat 276.555 kb on + strandat 276.675 kb on + strandat 276.696 kb on + strandat 276.726 kb on + strand, within GFF1034at 276.726 kb on + strand, within GFF1034at 276.726 kb on + strand, within GFF1034at 276.727 kb on - strand, within GFF1034at 276.760 kb on + strand, within GFF1034at 276.760 kb on + strand, within GFF1034at 276.761 kb on - strand, within GFF1034at 276.761 kb on - strand, within GFF1034at 276.761 kb on - strand, within GFF1034at 276.839 kb on - strand, within GFF1034at 276.855 kb on - strand, within GFF1034at 277.061 kb on + strand, within GFF1035at 277.189 kb on - strand, within GFF1035at 277.208 kb on + strand, within GFF1035at 277.287 kb on + strand, within GFF1035at 277.287 kb on + strand, within GFF1035at 277.287 kb on + strand, within GFF1035at 277.287 kb on + strand, within GFF1035at 277.288 kb on - strand, within GFF1035at 277.297 kb on + strand, within GFF1035at 277.298 kb on - strand, within GFF1035at 277.301 kb on + strand, within GFF1035at 277.301 kb on + strand, within GFF1035at 277.302 kb on - strand, within GFF1035at 277.302 kb on - strand, within GFF1035at 277.408 kb on + strandat 277.408 kb on + strandat 277.409 kb on - strandat 277.409 kb on - strandat 277.509 kb on + strandat 277.509 kb on + strandat 277.593 kb on + strandat 277.593 kb on + strandat 277.593 kb on + strandat 277.681 kb on - strand, within GFF1036at 277.681 kb on - strand, within GFF1036at 277.709 kb on - strand, within GFF1036at 277.716 kb on + strand, within GFF1036at 277.716 kb on + strand, within GFF1036at 277.738 kb on + strand, within GFF1036at 277.739 kb on - strand, within GFF1036at 277.739 kb on - strand, within GFF1036at 277.935 kb on + strand, within GFF1036at 277.963 kb on + strand, within GFF1036at 277.964 kb on - strand, within GFF1036

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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275,950 - GFF1033 0.46 -0.8
276,036 + GFF1033 0.52 -0.0
276,036 + GFF1033 0.52 -0.4
276,036 + GFF1033 0.52 -1.0
276,036 + GFF1033 0.52 -1.3
276,036 + GFF1033 0.52 -0.3
276,036 + GFF1033 0.52 -0.4
276,036 + GFF1033 0.52 -0.5
276,037 - GFF1033 0.52 -0.8
276,037 - GFF1033 0.52 +0.3
276,037 - GFF1033 0.52 -1.3
276,071 + GFF1033 0.55 +0.1
276,071 + GFF1033 0.55 +0.5
276,111 + GFF1033 0.58 +1.0
276,112 - GFF1033 0.58 -0.2
276,143 + GFF1033 0.60 -0.0
276,143 + GFF1033 0.60 -0.6
276,143 + GFF1033 0.60 -0.2
276,143 + GFF1033 0.60 -0.1
276,147 + GFF1033 0.60 -0.1
276,147 + GFF1033 0.60 +0.4
276,147 + GFF1033 0.60 -0.2
276,147 + GFF1033 0.60 -1.0
276,148 - GFF1033 0.61 -1.0
276,148 - GFF1033 0.61 -0.9
276,222 + GFF1033 0.66 +0.5
276,222 + GFF1033 0.66 -1.4
276,223 - GFF1033 0.66 -0.3
276,223 - GFF1033 0.66 -0.3
276,235 + GFF1033 0.67 +0.2
276,235 + GFF1033 0.67 -2.0
276,235 + GFF1033 0.67 -0.6
276,235 + GFF1033 0.67 -1.2
276,235 + GFF1033 0.67 +0.3
276,235 + GFF1033 0.67 -0.4
276,235 + GFF1033 0.67 -0.4
276,236 - GFF1033 0.67 -0.3
276,236 - GFF1033 0.67 -2.2
276,236 - GFF1033 0.67 +0.7
276,236 - GFF1033 0.67 -0.9
276,236 - GFF1033 0.67 -1.0
276,313 + GFF1033 0.73 -0.6
276,313 + GFF1033 0.73 -0.4
276,313 + GFF1033 0.73 +0.7
276,313 + GFF1033 0.73 -0.0
276,313 + GFF1033 0.73 -0.0
276,313 + GFF1033 0.73 -0.6
276,314 - GFF1033 0.73 +0.5
276,314 - GFF1033 0.73 +0.2
276,441 + GFF1033 0.82 -0.0
276,442 - GFF1033 0.82 -0.8
276,442 - GFF1033 0.82 -2.3
276,442 - GFF1033 0.82 +1.0
276,468 - GFF1033 0.84 -1.5
276,471 + GFF1033 0.84 -1.3
276,516 + GFF1033 0.88 -1.3
276,517 - GFF1033 0.88 -0.5
276,519 + GFF1033 0.88 -0.6
276,555 + -1.3
276,555 + -0.1
276,675 + -2.5
276,696 + -0.9
276,726 + GFF1034 0.19 -1.1
276,726 + GFF1034 0.19 -0.0
276,726 + GFF1034 0.19 +0.7
276,727 - GFF1034 0.19 -0.1
276,760 + GFF1034 0.32 -1.3
276,760 + GFF1034 0.32 -2.8
276,761 - GFF1034 0.32 -0.3
276,761 - GFF1034 0.32 -0.0
276,761 - GFF1034 0.32 -0.0
276,839 - GFF1034 0.62 +0.6
276,855 - GFF1034 0.69 -2.0
277,061 + GFF1035 0.26 -0.8
277,189 - GFF1035 0.53 -0.4
277,208 + GFF1035 0.57 -1.7
277,287 + GFF1035 0.74 +0.6
277,287 + GFF1035 0.74 -1.0
277,287 + GFF1035 0.74 -0.3
277,287 + GFF1035 0.74 +0.1
277,288 - GFF1035 0.74 -0.6
277,297 + GFF1035 0.76 -1.0
277,298 - GFF1035 0.76 -1.6
277,301 + GFF1035 0.77 -1.3
277,301 + GFF1035 0.77 -1.7
277,302 - GFF1035 0.77 +0.3
277,302 - GFF1035 0.77 -1.3
277,408 + -1.7
277,408 + -0.0
277,409 - +0.2
277,409 - +0.4
277,509 + -0.0
277,509 + -0.3
277,593 + -0.8
277,593 + -0.0
277,593 + -0.0
277,681 - GFF1036 0.12 -1.5
277,681 - GFF1036 0.12 -1.0
277,709 - GFF1036 0.14 -1.6
277,716 + GFF1036 0.14 -2.3
277,716 + GFF1036 0.14 +0.2
277,738 + GFF1036 0.15 -0.6
277,739 - GFF1036 0.15 -1.0
277,739 - GFF1036 0.15 -1.0
277,935 + GFF1036 0.24 -0.6
277,963 + GFF1036 0.25 -0.9
277,964 - GFF1036 0.26 +0.6

Or see this region's nucleotide sequence