Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06216

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06214 and MPMX19_06215 overlap by 1 nucleotidesMPMX19_06215 and MPMX19_06216 overlap by 4 nucleotidesMPMX19_06216 and MPMX19_06217 overlap by 4 nucleotides MPMX19_06214: MPMX19_06214 - Aldose 1-epimerase, at 396,770 to 397,801 _06214 MPMX19_06215: MPMX19_06215 - Inner membrane ABC transporter permease protein YjfF, at 397,801 to 398,787 _06215 MPMX19_06216: MPMX19_06216 - Inner membrane ABC transporter permease protein YtfT, at 398,784 to 399,827 _06216 MPMX19_06217: MPMX19_06217 - Fructose import ATP-binding protein FruK, at 399,824 to 401,383 _06217 Position (kb) 398 399 400Strain fitness (log2 ratio) -2 -1 0 1 2 3at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.937 kb on + strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.938 kb on - strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.988 kb on + strand, within MPMX19_06215at 397.989 kb on - strand, within MPMX19_06215at 397.989 kb on - strand, within MPMX19_06215at 398.073 kb on - strand, within MPMX19_06215at 398.087 kb on + strand, within MPMX19_06215at 398.088 kb on - strand, within MPMX19_06215at 398.088 kb on - strand, within MPMX19_06215at 398.088 kb on - strand, within MPMX19_06215at 398.088 kb on - strand, within MPMX19_06215at 398.138 kb on + strand, within MPMX19_06215at 398.138 kb on + strand, within MPMX19_06215at 398.138 kb on + strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.139 kb on - strand, within MPMX19_06215at 398.211 kb on - strand, within MPMX19_06215at 398.211 kb on - strand, within MPMX19_06215at 398.211 kb on - strand, within MPMX19_06215at 398.342 kb on + strand, within MPMX19_06215at 398.342 kb on + strand, within MPMX19_06215at 398.342 kb on + strand, within MPMX19_06215at 398.342 kb on + strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 398.343 kb on - strand, within MPMX19_06215at 399.169 kb on + strand, within MPMX19_06216at 399.169 kb on + strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.170 kb on - strand, within MPMX19_06216at 399.784 kb on + strandat 399.784 kb on + strandat 399.784 kb on + strandat 399.785 kb on - strandat 399.785 kb on - strandat 399.785 kb on - strandat 399.785 kb on - strandat 399.785 kb on - strandat 399.854 kb on + strandat 399.855 kb on - strandat 399.855 kb on - strandat 399.855 kb on - strandat 399.855 kb on - strandat 399.967 kb on - strandat 400.749 kb on + strand, within MPMX19_06217at 400.749 kb on + strand, within MPMX19_06217at 400.749 kb on + strand, within MPMX19_06217at 400.749 kb on + strand, within MPMX19_06217at 400.749 kb on + strand, within MPMX19_06217at 400.749 kb on + strand, within MPMX19_06217at 400.749 kb on + strand, within MPMX19_06217at 400.749 kb on + strand, within MPMX19_06217at 400.750 kb on - strand, within MPMX19_06217at 400.750 kb on - strand, within MPMX19_06217at 400.750 kb on - strand, within MPMX19_06217at 400.750 kb on - strand, within MPMX19_06217at 400.750 kb on - strand, within MPMX19_06217at 400.750 kb on - strand, within MPMX19_06217at 400.750 kb on - strand, within MPMX19_06217

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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397,937 + MPMX19_06215 0.14 -0.4
397,937 + MPMX19_06215 0.14 +0.5
397,937 + MPMX19_06215 0.14 -1.3
397,937 + MPMX19_06215 0.14 +0.0
397,937 + MPMX19_06215 0.14 -2.0
397,937 + MPMX19_06215 0.14 +0.1
397,937 + MPMX19_06215 0.14 +0.5
397,937 + MPMX19_06215 0.14 -0.6
397,937 + MPMX19_06215 0.14 +0.0
397,937 + MPMX19_06215 0.14 -0.5
397,937 + MPMX19_06215 0.14 +3.3
397,937 + MPMX19_06215 0.14 +0.8
397,937 + MPMX19_06215 0.14 -1.1
397,937 + MPMX19_06215 0.14 -0.3
397,937 + MPMX19_06215 0.14 +0.5
397,937 + MPMX19_06215 0.14 +0.4
397,937 + MPMX19_06215 0.14 -1.8
397,937 + MPMX19_06215 0.14 -1.4
397,937 + MPMX19_06215 0.14 -0.9
397,937 + MPMX19_06215 0.14 -0.7
397,938 - MPMX19_06215 0.14 -0.9
397,938 - MPMX19_06215 0.14 +0.0
397,938 - MPMX19_06215 0.14 -0.9
397,938 - MPMX19_06215 0.14 -2.3
397,938 - MPMX19_06215 0.14 -1.0
397,938 - MPMX19_06215 0.14 -2.7
397,938 - MPMX19_06215 0.14 -2.3
397,938 - MPMX19_06215 0.14 -0.3
397,938 - MPMX19_06215 0.14 -1.3
397,938 - MPMX19_06215 0.14 -1.2
397,938 - MPMX19_06215 0.14 +0.7
397,938 - MPMX19_06215 0.14 +0.4
397,938 - MPMX19_06215 0.14 -0.8
397,938 - MPMX19_06215 0.14 -0.7
397,938 - MPMX19_06215 0.14 +0.1
397,938 - MPMX19_06215 0.14 -0.2
397,938 - MPMX19_06215 0.14 -0.7
397,938 - MPMX19_06215 0.14 +0.9
397,938 - MPMX19_06215 0.14 -0.6
397,938 - MPMX19_06215 0.14 +2.3
397,938 - MPMX19_06215 0.14 +0.0
397,938 - MPMX19_06215 0.14 -0.3
397,938 - MPMX19_06215 0.14 -1.6
397,938 - MPMX19_06215 0.14 -1.3
397,988 + MPMX19_06215 0.19 +1.6
397,988 + MPMX19_06215 0.19 -0.0
397,988 + MPMX19_06215 0.19 -1.0
397,988 + MPMX19_06215 0.19 -1.7
397,988 + MPMX19_06215 0.19 -0.5
397,988 + MPMX19_06215 0.19 -0.1
397,989 - MPMX19_06215 0.19 -1.2
397,989 - MPMX19_06215 0.19 -0.9
398,073 - MPMX19_06215 0.28 +0.5
398,087 + MPMX19_06215 0.29 -1.0
398,088 - MPMX19_06215 0.29 -1.2
398,088 - MPMX19_06215 0.29 -0.4
398,088 - MPMX19_06215 0.29 -1.4
398,088 - MPMX19_06215 0.29 +0.1
398,138 + MPMX19_06215 0.34 -0.2
398,138 + MPMX19_06215 0.34 +1.8
398,138 + MPMX19_06215 0.34 -1.2
398,139 - MPMX19_06215 0.34 -0.5
398,139 - MPMX19_06215 0.34 -0.2
398,139 - MPMX19_06215 0.34 +0.2
398,139 - MPMX19_06215 0.34 -0.2
398,139 - MPMX19_06215 0.34 +1.5
398,139 - MPMX19_06215 0.34 -1.1
398,139 - MPMX19_06215 0.34 -1.5
398,139 - MPMX19_06215 0.34 -1.3
398,139 - MPMX19_06215 0.34 +0.3
398,211 - MPMX19_06215 0.42 -0.2
398,211 - MPMX19_06215 0.42 +0.6
398,211 - MPMX19_06215 0.42 -0.7
398,342 + MPMX19_06215 0.55 +0.3
398,342 + MPMX19_06215 0.55 +1.8
398,342 + MPMX19_06215 0.55 -0.7
398,342 + MPMX19_06215 0.55 -1.5
398,343 - MPMX19_06215 0.55 -1.1
398,343 - MPMX19_06215 0.55 +0.0
398,343 - MPMX19_06215 0.55 -0.3
398,343 - MPMX19_06215 0.55 -0.3
398,343 - MPMX19_06215 0.55 -0.2
398,343 - MPMX19_06215 0.55 +0.3
398,343 - MPMX19_06215 0.55 -0.3
399,169 + MPMX19_06216 0.37 +1.0
399,169 + MPMX19_06216 0.37 -1.9
399,170 - MPMX19_06216 0.37 -0.7
399,170 - MPMX19_06216 0.37 +0.6
399,170 - MPMX19_06216 0.37 +0.1
399,170 - MPMX19_06216 0.37 -1.0
399,170 - MPMX19_06216 0.37 +0.3
399,170 - MPMX19_06216 0.37 -0.6
399,170 - MPMX19_06216 0.37 +0.6
399,170 - MPMX19_06216 0.37 +1.7
399,170 - MPMX19_06216 0.37 +0.4
399,170 - MPMX19_06216 0.37 -0.4
399,170 - MPMX19_06216 0.37 +1.3
399,170 - MPMX19_06216 0.37 +0.1
399,170 - MPMX19_06216 0.37 +0.2
399,170 - MPMX19_06216 0.37 -0.2
399,784 + -0.2
399,784 + +0.4
399,784 + -2.5
399,785 - -1.6
399,785 - -0.3
399,785 - +0.0
399,785 - +1.3
399,785 - -1.0
399,854 + -0.0
399,855 - -0.3
399,855 - -0.3
399,855 - -0.3
399,855 - -0.1
399,967 - +0.5
400,749 + MPMX19_06217 0.59 +0.4
400,749 + MPMX19_06217 0.59 +1.1
400,749 + MPMX19_06217 0.59 -0.3
400,749 + MPMX19_06217 0.59 +0.8
400,749 + MPMX19_06217 0.59 +0.5
400,749 + MPMX19_06217 0.59 +0.5
400,749 + MPMX19_06217 0.59 -0.7
400,749 + MPMX19_06217 0.59 +0.1
400,750 - MPMX19_06217 0.59 +0.1
400,750 - MPMX19_06217 0.59 -1.2
400,750 - MPMX19_06217 0.59 -0.6
400,750 - MPMX19_06217 0.59 -0.2
400,750 - MPMX19_06217 0.59 -0.6
400,750 - MPMX19_06217 0.59 -0.1
400,750 - MPMX19_06217 0.59 -1.5

Or see this region's nucleotide sequence