Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06192

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06190 and MPMX19_06191 are separated by 7 nucleotidesMPMX19_06191 and MPMX19_06192 are separated by 12 nucleotidesMPMX19_06192 and MPMX19_06193 are separated by 27 nucleotidesMPMX19_06193 and MPMX19_06194 are separated by 11 nucleotidesMPMX19_06194 and MPMX19_06195 are separated by 24 nucleotides MPMX19_06190: MPMX19_06190 - hypothetical protein, at 380,745 to 381,146 _06190 MPMX19_06191: MPMX19_06191 - hypothetical protein, at 381,154 to 381,936 _06191 MPMX19_06192: MPMX19_06192 - hypothetical protein, at 381,949 to 382,215 _06192 MPMX19_06193: MPMX19_06193 - Flagellar hook-basal body complex protein FliE, at 382,243 to 382,602 _06193 MPMX19_06194: MPMX19_06194 - Flagellar basal-body rod protein FlgC, at 382,614 to 383,033 _06194 MPMX19_06195: MPMX19_06195 - hypothetical protein, at 383,058 to 383,450 _06195 Position (kb) 381 382 383Strain fitness (log2 ratio) -2 -1 0 1 2at 381.015 kb on + strand, within MPMX19_06190at 381.015 kb on + strand, within MPMX19_06190at 381.015 kb on + strand, within MPMX19_06190at 381.016 kb on - strand, within MPMX19_06190at 381.021 kb on + strand, within MPMX19_06190at 381.021 kb on + strand, within MPMX19_06190at 381.021 kb on + strand, within MPMX19_06190at 381.021 kb on + strand, within MPMX19_06190at 381.021 kb on + strand, within MPMX19_06190at 381.021 kb on + strand, within MPMX19_06190at 381.021 kb on + strand, within MPMX19_06190at 381.022 kb on - strand, within MPMX19_06190at 381.022 kb on - strand, within MPMX19_06190at 381.022 kb on - strand, within MPMX19_06190at 381.022 kb on - strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.066 kb on + strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.067 kb on - strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.099 kb on + strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.100 kb on - strand, within MPMX19_06190at 381.102 kb on + strand, within MPMX19_06190at 381.290 kb on + strand, within MPMX19_06191at 381.290 kb on + strand, within MPMX19_06191at 381.290 kb on + strand, within MPMX19_06191at 381.440 kb on + strand, within MPMX19_06191at 381.440 kb on + strand, within MPMX19_06191at 381.440 kb on + strand, within MPMX19_06191at 381.441 kb on - strand, within MPMX19_06191at 381.572 kb on + strand, within MPMX19_06191at 381.599 kb on + strand, within MPMX19_06191at 381.599 kb on + strand, within MPMX19_06191at 381.599 kb on + strand, within MPMX19_06191at 381.599 kb on + strand, within MPMX19_06191at 381.599 kb on + strand, within MPMX19_06191at 381.599 kb on + strand, within MPMX19_06191at 381.599 kb on + strand, within MPMX19_06191at 381.600 kb on - strand, within MPMX19_06191at 381.600 kb on - strand, within MPMX19_06191at 381.600 kb on - strand, within MPMX19_06191at 381.600 kb on - strand, within MPMX19_06191at 381.600 kb on - strand, within MPMX19_06191at 381.813 kb on - strand, within MPMX19_06191at 381.813 kb on - strand, within MPMX19_06191at 381.813 kb on - strand, within MPMX19_06191at 381.813 kb on - strand, within MPMX19_06191at 381.884 kb on - strandat 381.989 kb on + strand, within MPMX19_06192at 381.989 kb on + strand, within MPMX19_06192at 381.989 kb on + strand, within MPMX19_06192at 381.990 kb on - strand, within MPMX19_06192at 381.990 kb on - strand, within MPMX19_06192at 381.990 kb on - strand, within MPMX19_06192at 381.990 kb on - strand, within MPMX19_06192at 381.990 kb on - strand, within MPMX19_06192at 382.006 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.271 kb on + strandat 382.271 kb on + strandat 382.272 kb on - strandat 382.272 kb on - strandat 382.565 kb on + strand, within MPMX19_06193at 382.565 kb on + strand, within MPMX19_06193at 382.565 kb on + strand, within MPMX19_06193at 382.566 kb on - strand, within MPMX19_06193at 382.566 kb on - strand, within MPMX19_06193at 382.566 kb on - strand, within MPMX19_06193at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.789 kb on + strand, within MPMX19_06194at 382.789 kb on + strand, within MPMX19_06194at 382.789 kb on + strand, within MPMX19_06194at 382.789 kb on + strand, within MPMX19_06194at 382.790 kb on - strand, within MPMX19_06194at 382.898 kb on - strand, within MPMX19_06194at 382.925 kb on + strand, within MPMX19_06194at 382.925 kb on + strand, within MPMX19_06194at 382.926 kb on - strand, within MPMX19_06194at 383.050 kb on + strandat 383.050 kb on + strandat 383.051 kb on - strandat 383.051 kb on - strandat 383.051 kb on - strandat 383.051 kb on - strandat 383.051 kb on - strandat 383.051 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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381,015 + MPMX19_06190 0.67 -0.1
381,015 + MPMX19_06190 0.67 +0.3
381,015 + MPMX19_06190 0.67 -0.0
381,016 - MPMX19_06190 0.67 -1.6
381,021 + MPMX19_06190 0.69 -0.2
381,021 + MPMX19_06190 0.69 -0.7
381,021 + MPMX19_06190 0.69 +0.1
381,021 + MPMX19_06190 0.69 +0.4
381,021 + MPMX19_06190 0.69 -1.1
381,021 + MPMX19_06190 0.69 -0.6
381,021 + MPMX19_06190 0.69 +0.3
381,022 - MPMX19_06190 0.69 +0.3
381,022 - MPMX19_06190 0.69 -0.2
381,022 - MPMX19_06190 0.69 +0.6
381,022 - MPMX19_06190 0.69 -1.9
381,066 + MPMX19_06190 0.80 +0.7
381,066 + MPMX19_06190 0.80 -0.7
381,066 + MPMX19_06190 0.80 -0.7
381,066 + MPMX19_06190 0.80 -1.5
381,066 + MPMX19_06190 0.80 +0.7
381,066 + MPMX19_06190 0.80 -0.5
381,066 + MPMX19_06190 0.80 -0.3
381,066 + MPMX19_06190 0.80 -0.7
381,066 + MPMX19_06190 0.80 -1.4
381,066 + MPMX19_06190 0.80 -0.2
381,066 + MPMX19_06190 0.80 -0.8
381,066 + MPMX19_06190 0.80 -1.2
381,066 + MPMX19_06190 0.80 -0.4
381,067 - MPMX19_06190 0.80 -0.2
381,067 - MPMX19_06190 0.80 +2.1
381,067 - MPMX19_06190 0.80 -0.2
381,067 - MPMX19_06190 0.80 +0.1
381,067 - MPMX19_06190 0.80 -1.6
381,067 - MPMX19_06190 0.80 +1.5
381,067 - MPMX19_06190 0.80 +0.0
381,067 - MPMX19_06190 0.80 -0.8
381,067 - MPMX19_06190 0.80 -0.2
381,099 + MPMX19_06190 0.88 +0.0
381,099 + MPMX19_06190 0.88 +0.5
381,099 + MPMX19_06190 0.88 +0.8
381,099 + MPMX19_06190 0.88 -0.1
381,099 + MPMX19_06190 0.88 +0.4
381,099 + MPMX19_06190 0.88 +0.1
381,099 + MPMX19_06190 0.88 +0.8
381,099 + MPMX19_06190 0.88 -1.1
381,100 - MPMX19_06190 0.88 +0.3
381,100 - MPMX19_06190 0.88 -1.9
381,100 - MPMX19_06190 0.88 -0.9
381,100 - MPMX19_06190 0.88 +0.0
381,100 - MPMX19_06190 0.88 +0.4
381,100 - MPMX19_06190 0.88 -1.2
381,100 - MPMX19_06190 0.88 -0.9
381,100 - MPMX19_06190 0.88 -1.3
381,100 - MPMX19_06190 0.88 +0.8
381,102 + MPMX19_06190 0.89 -0.6
381,290 + MPMX19_06191 0.17 -0.2
381,290 + MPMX19_06191 0.17 -0.4
381,290 + MPMX19_06191 0.17 +0.3
381,440 + MPMX19_06191 0.37 -0.4
381,440 + MPMX19_06191 0.37 +0.2
381,440 + MPMX19_06191 0.37 -1.3
381,441 - MPMX19_06191 0.37 -1.6
381,572 + MPMX19_06191 0.53 +0.5
381,599 + MPMX19_06191 0.57 +0.3
381,599 + MPMX19_06191 0.57 -1.7
381,599 + MPMX19_06191 0.57 +0.2
381,599 + MPMX19_06191 0.57 -1.7
381,599 + MPMX19_06191 0.57 -1.7
381,599 + MPMX19_06191 0.57 -1.4
381,599 + MPMX19_06191 0.57 +0.5
381,600 - MPMX19_06191 0.57 -0.2
381,600 - MPMX19_06191 0.57 +0.3
381,600 - MPMX19_06191 0.57 +1.0
381,600 - MPMX19_06191 0.57 +0.5
381,600 - MPMX19_06191 0.57 -0.3
381,813 - MPMX19_06191 0.84 +0.5
381,813 - MPMX19_06191 0.84 -1.3
381,813 - MPMX19_06191 0.84 -1.5
381,813 - MPMX19_06191 0.84 -0.4
381,884 - -1.1
381,989 + MPMX19_06192 0.15 -1.2
381,989 + MPMX19_06192 0.15 +0.8
381,989 + MPMX19_06192 0.15 +1.4
381,990 - MPMX19_06192 0.15 +1.0
381,990 - MPMX19_06192 0.15 -0.7
381,990 - MPMX19_06192 0.15 +0.7
381,990 - MPMX19_06192 0.15 +0.0
381,990 - MPMX19_06192 0.15 -0.6
382,006 + MPMX19_06192 0.21 +0.5
382,007 + MPMX19_06192 0.22 +0.8
382,007 + MPMX19_06192 0.22 +0.8
382,007 + MPMX19_06192 0.22 +1.4
382,007 + MPMX19_06192 0.22 +0.2
382,007 + MPMX19_06192 0.22 -0.5
382,007 + MPMX19_06192 0.22 -1.0
382,007 + MPMX19_06192 0.22 -1.5
382,007 + MPMX19_06192 0.22 +0.1
382,007 + MPMX19_06192 0.22 -0.1
382,007 + MPMX19_06192 0.22 -0.6
382,007 + MPMX19_06192 0.22 -0.5
382,007 + MPMX19_06192 0.22 -1.1
382,007 + MPMX19_06192 0.22 -0.7
382,007 + MPMX19_06192 0.22 -1.2
382,007 + MPMX19_06192 0.22 -0.4
382,007 + MPMX19_06192 0.22 -0.2
382,007 + MPMX19_06192 0.22 -0.0
382,007 + MPMX19_06192 0.22 +0.3
382,007 + MPMX19_06192 0.22 -0.4
382,007 + MPMX19_06192 0.22 +0.4
382,007 + MPMX19_06192 0.22 -1.8
382,008 - MPMX19_06192 0.22 -0.5
382,008 - MPMX19_06192 0.22 -0.7
382,008 - MPMX19_06192 0.22 -0.3
382,008 - MPMX19_06192 0.22 +1.6
382,008 - MPMX19_06192 0.22 +0.1
382,008 - MPMX19_06192 0.22 +0.0
382,008 - MPMX19_06192 0.22 +0.2
382,008 - MPMX19_06192 0.22 +1.1
382,008 - MPMX19_06192 0.22 -1.0
382,008 - MPMX19_06192 0.22 -0.3
382,008 - MPMX19_06192 0.22 +0.1
382,008 - MPMX19_06192 0.22 +0.0
382,008 - MPMX19_06192 0.22 +0.1
382,271 + -0.3
382,271 + -2.0
382,272 - -0.2
382,272 - -0.5
382,565 + MPMX19_06193 0.89 +0.1
382,565 + MPMX19_06193 0.89 -1.7
382,565 + MPMX19_06193 0.89 -0.2
382,566 - MPMX19_06193 0.90 -0.6
382,566 - MPMX19_06193 0.90 -1.2
382,566 - MPMX19_06193 0.90 +0.7
382,753 + MPMX19_06194 0.33 +1.2
382,753 + MPMX19_06194 0.33 +0.8
382,753 + MPMX19_06194 0.33 -0.2
382,753 + MPMX19_06194 0.33 +0.6
382,753 + MPMX19_06194 0.33 -2.6
382,753 + MPMX19_06194 0.33 -0.8
382,753 + MPMX19_06194 0.33 -0.6
382,753 + MPMX19_06194 0.33 -0.3
382,754 - MPMX19_06194 0.33 -0.2
382,754 - MPMX19_06194 0.33 -1.2
382,754 - MPMX19_06194 0.33 -2.7
382,754 - MPMX19_06194 0.33 -2.6
382,754 - MPMX19_06194 0.33 -0.7
382,754 - MPMX19_06194 0.33 +0.4
382,754 - MPMX19_06194 0.33 -0.4
382,754 - MPMX19_06194 0.33 +0.1
382,754 - MPMX19_06194 0.33 +1.3
382,789 + MPMX19_06194 0.42 -1.2
382,789 + MPMX19_06194 0.42 +1.5
382,789 + MPMX19_06194 0.42 -1.7
382,789 + MPMX19_06194 0.42 +0.3
382,790 - MPMX19_06194 0.42 +1.1
382,898 - MPMX19_06194 0.68 -0.5
382,925 + MPMX19_06194 0.74 +0.4
382,925 + MPMX19_06194 0.74 -1.7
382,926 - MPMX19_06194 0.74 -0.4
383,050 + -0.3
383,050 + +0.4
383,051 - -0.3
383,051 - -1.3
383,051 - -0.5
383,051 - -1.0
383,051 - +0.1
383,051 - -0.6

Or see this region's nucleotide sequence