Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06106 and MPMX19_06107 are separated by 206 nucleotides MPMX19_06107 and MPMX19_06108 overlap by 4 nucleotides MPMX19_06108 and MPMX19_06109 are separated by 324 nucleotides
MPMX19_06106: MPMX19_06106 - Bacteriohemerythrin, at 290,525 to 290,929
_06106
MPMX19_06107: MPMX19_06107 - hypothetical protein, at 291,136 to 291,888
_06107
MPMX19_06108: MPMX19_06108 - Cocaine esterase, at 291,885 to 293,540
_06108
MPMX19_06109: MPMX19_06109 - Adenine deaminase, at 293,865 to 295,574
_06109
Position (kb) 291
292
293
294 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 291.034 kb on + strand at 291.034 kb on + strand at 291.034 kb on + strand at 291.035 kb on - strand at 291.035 kb on - strand at 291.035 kb on - strand at 291.035 kb on - strand at 291.272 kb on - strand, within MPMX19_06107 at 291.302 kb on + strand, within MPMX19_06107 at 291.302 kb on + strand, within MPMX19_06107 at 291.302 kb on + strand, within MPMX19_06107 at 291.302 kb on + strand, within MPMX19_06107 at 291.302 kb on + strand, within MPMX19_06107 at 291.303 kb on - strand, within MPMX19_06107 at 291.457 kb on + strand, within MPMX19_06107 at 291.457 kb on + strand, within MPMX19_06107 at 291.457 kb on + strand, within MPMX19_06107 at 291.458 kb on - strand, within MPMX19_06107 at 291.487 kb on + strand, within MPMX19_06107 at 291.487 kb on + strand, within MPMX19_06107 at 291.487 kb on + strand, within MPMX19_06107 at 291.487 kb on + strand, within MPMX19_06107 at 291.488 kb on - strand, within MPMX19_06107 at 291.488 kb on - strand, within MPMX19_06107 at 291.488 kb on - strand, within MPMX19_06107 at 291.748 kb on + strand, within MPMX19_06107 at 291.748 kb on + strand, within MPMX19_06107 at 291.749 kb on - strand, within MPMX19_06107 at 291.749 kb on - strand, within MPMX19_06107 at 291.749 kb on - strand, within MPMX19_06107 at 291.886 kb on + strand at 291.886 kb on + strand at 291.886 kb on + strand at 291.886 kb on + strand at 291.887 kb on - strand at 291.887 kb on - strand at 291.887 kb on - strand at 292.019 kb on - strand at 292.291 kb on + strand, within MPMX19_06108 at 292.291 kb on + strand, within MPMX19_06108 at 292.291 kb on + strand, within MPMX19_06108 at 292.291 kb on + strand, within MPMX19_06108 at 292.291 kb on + strand, within MPMX19_06108 at 292.291 kb on + strand, within MPMX19_06108 at 292.291 kb on + strand, within MPMX19_06108 at 292.292 kb on - strand, within MPMX19_06108 at 292.292 kb on - strand, within MPMX19_06108 at 292.292 kb on - strand, within MPMX19_06108 at 292.292 kb on - strand, within MPMX19_06108 at 292.756 kb on + strand, within MPMX19_06108 at 292.756 kb on + strand, within MPMX19_06108 at 292.756 kb on + strand, within MPMX19_06108 at 292.757 kb on - strand, within MPMX19_06108 at 292.757 kb on - strand, within MPMX19_06108 at 292.870 kb on + strand, within MPMX19_06108 at 292.870 kb on + strand, within MPMX19_06108 at 292.871 kb on - strand, within MPMX19_06108 at 292.879 kb on + strand, within MPMX19_06108 at 292.880 kb on - strand, within MPMX19_06108 at 292.888 kb on + strand, within MPMX19_06108 at 292.888 kb on + strand, within MPMX19_06108 at 292.888 kb on + strand, within MPMX19_06108 at 292.888 kb on + strand, within MPMX19_06108 at 292.889 kb on - strand, within MPMX19_06108 at 293.059 kb on + strand, within MPMX19_06108 at 293.059 kb on + strand, within MPMX19_06108 at 293.059 kb on + strand, within MPMX19_06108 at 293.059 kb on + strand, within MPMX19_06108 at 293.059 kb on + strand, within MPMX19_06108 at 293.059 kb on + strand, within MPMX19_06108 at 293.059 kb on + strand, within MPMX19_06108 at 293.060 kb on - strand, within MPMX19_06108 at 293.060 kb on - strand, within MPMX19_06108 at 293.060 kb on - strand, within MPMX19_06108 at 293.060 kb on - strand, within MPMX19_06108 at 293.060 kb on - strand, within MPMX19_06108 at 293.161 kb on + strand, within MPMX19_06108 at 293.162 kb on - strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.294 kb on + strand, within MPMX19_06108 at 293.294 kb on + strand, within MPMX19_06108 at 293.294 kb on + strand, within MPMX19_06108 at 293.295 kb on - strand, within MPMX19_06108 at 293.295 kb on - strand, within MPMX19_06108 at 293.295 kb on - strand, within MPMX19_06108 at 293.295 kb on - strand, within MPMX19_06108 at 293.295 kb on - strand, within MPMX19_06108 at 293.314 kb on + strand, within MPMX19_06108 at 293.314 kb on + strand, within MPMX19_06108 at 293.314 kb on + strand, within MPMX19_06108 at 293.314 kb on + strand, within MPMX19_06108 at 293.314 kb on + strand, within MPMX19_06108 at 293.314 kb on + strand, within MPMX19_06108 at 293.314 kb on + strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.329 kb on + strand, within MPMX19_06108 at 293.329 kb on + strand, within MPMX19_06108 at 293.329 kb on + strand, within MPMX19_06108 at 293.330 kb on - strand, within MPMX19_06108 at 293.347 kb on + strand, within MPMX19_06108 at 293.347 kb on + strand, within MPMX19_06108 at 293.348 kb on - strand, within MPMX19_06108 at 293.348 kb on - strand, within MPMX19_06108 at 293.429 kb on - strand at 293.575 kb on + strand at 293.575 kb on + strand at 293.576 kb on - strand at 293.634 kb on + strand at 293.639 kb on + strand at 293.639 kb on + strand at 293.639 kb on + strand at 293.639 kb on + strand at 293.640 kb on - strand at 293.640 kb on - strand at 293.640 kb on - strand at 293.640 kb on - strand at 293.652 kb on + strand at 293.652 kb on + strand at 293.652 kb on + strand at 293.653 kb on - strand at 293.653 kb on - strand at 293.748 kb on + strand at 293.749 kb on - strand at 294.534 kb on - strand, within MPMX19_06109 at 294.534 kb on - strand, within MPMX19_06109 at 294.534 kb on - strand, within MPMX19_06109
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 290,922 + +1.3 290,922 + +0.3 290,922 + -0.1 290,922 + -1.3 290,922 + +0.3 290,922 + -0.7 290,922 + -0.2 290,922 + -0.5 290,922 + -1.0 290,922 + -1.0 290,922 + +0.8 290,922 + +0.5 290,922 + -1.7 290,922 + -0.6 290,922 + -1.5 290,922 + -1.8 290,922 + +0.6 290,922 + +1.0 290,922 + +0.3 290,922 + -0.1 290,922 + -0.3 290,922 + -0.5 290,922 + +0.4 290,922 + +0.6 290,922 + -0.5 290,922 + -0.3 290,922 + +0.4 290,922 + -0.2 290,922 + +0.6 290,922 + +0.1 290,922 + +0.3 290,922 + +0.1 290,922 + -0.2 290,922 + +0.0 290,922 + -0.1 290,922 + -0.4 290,922 + -0.2 290,922 + -1.4 290,922 + -0.8 290,922 + -2.1 290,922 + -1.2 290,923 - -0.1 290,923 - -0.6 290,923 - +0.3 290,923 - +1.4 290,923 - -1.2 290,923 - +0.0 290,923 - +0.0 290,923 - +2.1 290,923 - -1.9 290,923 - -0.7 290,923 - +0.0 290,923 - +0.1 290,923 - -1.5 290,923 - +0.1 290,923 - +0.5 290,923 - -0.2 290,923 - -0.6 290,923 - +0.8 290,923 - +0.1 290,923 - -0.9 290,923 - +0.3 290,923 - -0.2 290,923 - -0.7 290,923 - +1.0 290,923 - -1.2 291,034 + +0.4 291,034 + +0.3 291,034 + -0.3 291,035 - -2.3 291,035 - -1.4 291,035 - -1.1 291,035 - -0.4 291,272 - MPMX19_06107 0.18 -2.5 291,302 + MPMX19_06107 0.22 -0.1 291,302 + MPMX19_06107 0.22 -1.1 291,302 + MPMX19_06107 0.22 +1.0 291,302 + MPMX19_06107 0.22 +1.2 291,302 + MPMX19_06107 0.22 -0.0 291,303 - MPMX19_06107 0.22 -0.5 291,457 + MPMX19_06107 0.43 -2.6 291,457 + MPMX19_06107 0.43 -0.4 291,457 + MPMX19_06107 0.43 -0.4 291,458 - MPMX19_06107 0.43 -0.8 291,487 + MPMX19_06107 0.47 +0.3 291,487 + MPMX19_06107 0.47 -0.3 291,487 + MPMX19_06107 0.47 -0.8 291,487 + MPMX19_06107 0.47 -1.1 291,488 - MPMX19_06107 0.47 -0.9 291,488 - MPMX19_06107 0.47 -0.6 291,488 - MPMX19_06107 0.47 -0.6 291,748 + MPMX19_06107 0.81 +0.3 291,748 + MPMX19_06107 0.81 -0.6 291,749 - MPMX19_06107 0.81 -0.5 291,749 - MPMX19_06107 0.81 +0.1 291,749 - MPMX19_06107 0.81 -1.4 291,886 + -0.4 291,886 + +0.5 291,886 + -0.8 291,886 + +0.4 291,887 - -0.0 291,887 - +0.5 291,887 - -0.7 292,019 - -0.8 292,291 + MPMX19_06108 0.25 +0.3 292,291 + MPMX19_06108 0.25 +0.8 292,291 + MPMX19_06108 0.25 +0.3 292,291 + MPMX19_06108 0.25 -0.6 292,291 + MPMX19_06108 0.25 +1.3 292,291 + MPMX19_06108 0.25 +0.1 292,291 + MPMX19_06108 0.25 -0.0 292,292 - MPMX19_06108 0.25 +0.7 292,292 - MPMX19_06108 0.25 +1.6 292,292 - MPMX19_06108 0.25 -1.3 292,292 - MPMX19_06108 0.25 -1.3 292,756 + MPMX19_06108 0.53 -0.1 292,756 + MPMX19_06108 0.53 +1.4 292,756 + MPMX19_06108 0.53 -1.1 292,757 - MPMX19_06108 0.53 -1.3 292,757 - MPMX19_06108 0.53 +0.1 292,870 + MPMX19_06108 0.59 -0.4 292,870 + MPMX19_06108 0.59 -1.4 292,871 - MPMX19_06108 0.60 -0.2 292,879 + MPMX19_06108 0.60 -0.7 292,880 - MPMX19_06108 0.60 +1.0 292,888 + MPMX19_06108 0.61 -1.0 292,888 + MPMX19_06108 0.61 -0.3 292,888 + MPMX19_06108 0.61 +1.0 292,888 + MPMX19_06108 0.61 +0.6 292,889 - MPMX19_06108 0.61 -0.6 293,059 + MPMX19_06108 0.71 +1.0 293,059 + MPMX19_06108 0.71 +0.3 293,059 + MPMX19_06108 0.71 -0.4 293,059 + MPMX19_06108 0.71 +0.7 293,059 + MPMX19_06108 0.71 +0.0 293,059 + MPMX19_06108 0.71 +2.8 293,059 + MPMX19_06108 0.71 -0.7 293,060 - MPMX19_06108 0.71 +0.6 293,060 - MPMX19_06108 0.71 -0.7 293,060 - MPMX19_06108 0.71 -0.2 293,060 - MPMX19_06108 0.71 -0.3 293,060 - MPMX19_06108 0.71 +0.3 293,161 + MPMX19_06108 0.77 -0.2 293,162 - MPMX19_06108 0.77 -0.3 293,173 + MPMX19_06108 0.78 -0.4 293,173 + MPMX19_06108 0.78 -0.1 293,173 + MPMX19_06108 0.78 -0.4 293,173 + MPMX19_06108 0.78 -1.6 293,173 + MPMX19_06108 0.78 -1.2 293,173 + MPMX19_06108 0.78 -1.1 293,173 + MPMX19_06108 0.78 -2.7 293,173 + MPMX19_06108 0.78 -0.5 293,173 + MPMX19_06108 0.78 -0.4 293,173 + MPMX19_06108 0.78 -1.2 293,173 + MPMX19_06108 0.78 +0.4 293,173 + MPMX19_06108 0.78 -2.0 293,173 + MPMX19_06108 0.78 -1.9 293,173 + MPMX19_06108 0.78 +0.3 293,173 + MPMX19_06108 0.78 -1.6 293,173 + MPMX19_06108 0.78 +0.6 293,173 + MPMX19_06108 0.78 -0.2 293,174 - MPMX19_06108 0.78 -2.8 293,174 - MPMX19_06108 0.78 -0.0 293,174 - MPMX19_06108 0.78 -0.2 293,174 - MPMX19_06108 0.78 -0.3 293,174 - MPMX19_06108 0.78 -0.7 293,174 - MPMX19_06108 0.78 -1.7 293,174 - MPMX19_06108 0.78 -0.8 293,174 - MPMX19_06108 0.78 +0.8 293,174 - MPMX19_06108 0.78 -0.8 293,174 - MPMX19_06108 0.78 -0.2 293,174 - MPMX19_06108 0.78 -0.1 293,174 - MPMX19_06108 0.78 -2.0 293,174 - MPMX19_06108 0.78 -1.8 293,174 - MPMX19_06108 0.78 -0.2 293,174 - MPMX19_06108 0.78 -2.0 293,174 - MPMX19_06108 0.78 +0.7 293,174 - MPMX19_06108 0.78 -1.7 293,174 - MPMX19_06108 0.78 -1.7 293,294 + MPMX19_06108 0.85 -0.9 293,294 + MPMX19_06108 0.85 -1.5 293,294 + MPMX19_06108 0.85 +0.4 293,295 - MPMX19_06108 0.85 -0.4 293,295 - MPMX19_06108 0.85 -0.6 293,295 - MPMX19_06108 0.85 +0.4 293,295 - MPMX19_06108 0.85 -1.2 293,295 - MPMX19_06108 0.85 +0.1 293,314 + MPMX19_06108 0.86 -0.6 293,314 + MPMX19_06108 0.86 -0.7 293,314 + MPMX19_06108 0.86 -0.5 293,314 + MPMX19_06108 0.86 -0.6 293,314 + MPMX19_06108 0.86 -0.8 293,314 + MPMX19_06108 0.86 -1.0 293,314 + MPMX19_06108 0.86 -1.0 293,315 - MPMX19_06108 0.86 +0.3 293,315 - MPMX19_06108 0.86 -0.5 293,315 - MPMX19_06108 0.86 +0.4 293,315 - MPMX19_06108 0.86 -1.9 293,315 - MPMX19_06108 0.86 +0.3 293,315 - MPMX19_06108 0.86 -0.5 293,315 - MPMX19_06108 0.86 -0.2 293,315 - MPMX19_06108 0.86 -0.5 293,315 - MPMX19_06108 0.86 -0.6 293,315 - MPMX19_06108 0.86 -0.5 293,329 + MPMX19_06108 0.87 -1.3 293,329 + MPMX19_06108 0.87 -0.6 293,329 + MPMX19_06108 0.87 -0.7 293,330 - MPMX19_06108 0.87 -1.1 293,347 + MPMX19_06108 0.88 +0.1 293,347 + MPMX19_06108 0.88 +0.7 293,348 - MPMX19_06108 0.88 +1.1 293,348 - MPMX19_06108 0.88 -1.6 293,429 - -1.4 293,575 + -1.9 293,575 + -0.6 293,576 - +0.0 293,634 + -1.3 293,639 + -0.5 293,639 + +0.2 293,639 + -0.2 293,639 + -1.3 293,640 - +1.3 293,640 - -1.3 293,640 - +0.3 293,640 - -0.7 293,652 + -1.0 293,652 + -0.8 293,652 + -1.0 293,653 - -0.6 293,653 - +0.3 293,748 + -0.9 293,749 - +1.4 294,534 - MPMX19_06109 0.39 -0.7 294,534 - MPMX19_06109 0.39 +0.3 294,534 - MPMX19_06109 0.39 +1.8
Or see this region's nucleotide sequence